Computational Tools for Life Science Research Spring 2017 Anna Williford Lesson1: Course Introduction and Software Setup Lesson2: File System Lesson3: More File System Navigation Lesson4: Files and Directories Lesson5: File Manipulation Lesson6: Shell Scripts I Lesson7: Shell Scripts II Lesson8: Shell Scripts III Lesson9: Genomic Data I Lesson10: Regular Expressions Lesson11: AWK I Lesson12: AWK II Lesson13: TACC Lesson14: Genomic Data II Lesson15: Genomic Data III Lesson16: Review Lesson17: Introduction to R Lesson18: R Data Types Lesson19: R Data Structures Lesson20: R Subsetting Lesson21-22: R Working With Data Lesson23: R Base Graphics Lesson24: Heatmaps Lesson25: R packages: dplyr Lesson26: R ggplot2 graphics Lesson27: R Maps Lesson28: R programming Lesson29: Reproducible Research