From 2ce6d1d94d9753f86c565ccb7a5f634817dbd9b2 Mon Sep 17 00:00:00 2001
From: bruno-f-cruz <7049351+bruno-f-cruz@users.noreply.github.com>
Date: Wed, 25 Dec 2024 12:35:13 +0000
Subject: [PATCH 01/16] Add magicgui dependencies

---
 pyproject.toml |   8 ++-
 uv.lock        | 153 +++++++++++++++++++++++++++++++++++++++++++++++++
 2 files changed, 160 insertions(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 855e4f70..bf840ed4 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -23,7 +23,7 @@ dependencies = [
     "gitpython",
     "semver",
     "aind_behavior_services>=0.8.0, <0.9.0",
-    "aind-slims-api<0.2"
+    "aind-slims-api<0.2",
 ]
 
 [project.urls]
@@ -38,11 +38,17 @@ aind-services = [
     "aind-data-schema<=1.2"
 ]
 
+magicgui = [
+    "magicgui[pyqt6]"
+]
+
 dev = [
     "ruff",
     "codespell",
     "coverage",
     "aind-behavior-experiment-launcher[aind-services]",
+    "aind-behavior-experiment-launcher[magicgui]",
+
 ]
 
 docs = [
diff --git a/uv.lock b/uv.lock
index 75fb6b10..1d5db5d0 100644
--- a/uv.lock
+++ b/uv.lock
@@ -43,6 +43,7 @@ dev = [
     { name = "aind-watchdog-service" },
     { name = "codespell" },
     { name = "coverage" },
+    { name = "magicgui", extra = ["pyqt6"] },
     { name = "ruff" },
 ]
 docs = [
@@ -56,11 +57,15 @@ docs = [
     { name = "sphinx-jsonschema" },
     { name = "sphinx-mdinclude" },
 ]
+magicgui = [
+    { name = "magicgui", extra = ["pyqt6"] },
+]
 
 [package.metadata]
 requires-dist = [
     { name = "aind-behavior-experiment-launcher", extras = ["aind-services"], marker = "extra == 'dev'" },
     { name = "aind-behavior-experiment-launcher", extras = ["aind-services"], marker = "extra == 'docs'" },
+    { name = "aind-behavior-experiment-launcher", extras = ["magicgui"], marker = "extra == 'dev'" },
     { name = "aind-behavior-services", specifier = ">=0.8.0,<0.9.0" },
     { name = "aind-data-schema", marker = "extra == 'aind-services'", specifier = "<=1.2" },
     { name = "aind-slims-api", specifier = "<0.2" },
@@ -70,6 +75,7 @@ requires-dist = [
     { name = "coverage", marker = "extra == 'dev'" },
     { name = "furo", marker = "extra == 'docs'" },
     { name = "gitpython" },
+    { name = "magicgui", extras = ["pyqt6"], marker = "extra == 'magicgui'" },
     { name = "pydantic", specifier = ">=2.7,<3.0" },
     { name = "ruff", marker = "extra == 'dev'" },
     { name = "semver" },
@@ -539,6 +545,15 @@ wheels = [
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 ]
 
+[[package]]
+name = "docstring-parser"
+version = "0.16"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/08/12/9c22a58c0b1e29271051222d8906257616da84135af9ed167c9e28f85cb3/docstring_parser-0.16.tar.gz", hash = "sha256:538beabd0af1e2db0146b6bd3caa526c35a34d61af9fd2887f3a8a27a739aa6e", size = 26565 }
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+]
+
 [[package]]
 name = "docutils"
 version = "0.20.1"
@@ -740,6 +755,27 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/d1/0f/8910b19ac0670a0f80ce1008e5e751c4a57e14d2c4c13a482aa6079fa9d6/jsonschema_specifications-2024.10.1-py3-none-any.whl", hash = "sha256:a09a0680616357d9a0ecf05c12ad234479f549239d0f5b55f3deea67475da9bf", size = 18459 },
 ]
 
+[[package]]
+name = "magicgui"
+version = "0.10.0"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "docstring-parser" },
+    { name = "psygnal" },
+    { name = "qtpy" },
+    { name = "superqt", extra = ["iconify"] },
+    { name = "typing-extensions" },
+]
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+[package.optional-dependencies]
+pyqt6 = [
+    { name = "pyqt6" },
+]
+
 [[package]]
 name = "markupsafe"
 version = "3.0.2"
@@ -925,6 +961,35 @@ wheels = [
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+    { url = "https://files.pythonhosted.org/packages/d8/5b/7321bb2564673bc4facfed338553bc42542f2ae05cbea1c8b57a596ab28d/PyQt6_sip-13.9.1-cp313-cp313-win_amd64.whl", hash = "sha256:3c269052c770c09b61fce2f2f9ea934a67dfc65f443d59629b4ccc8f89751890", size = 53509 },
+    { url = "https://files.pythonhosted.org/packages/cf/b6/eabe1d0fdcc56c80325c5a2cc361ae3e57b3346cb7700b707481d3977a24/PyQt6_sip-13.9.1-cp313-cp313-win_arm64.whl", hash = "sha256:8b2ac36d6e04db6099614b9c1178a2f87788c7ffc3826571fb63d36ddb4c401d", size = 45358 },
+]
+
 [[package]]
 name = "python-dateutil"
 version = "2.9.0.post0"
@@ -1087,6 +1206,18 @@ wheels = [
     { url = "https://files.pythonhosted.org/packages/fa/de/02b54f42487e3d3c6efb3f89428677074ca7bf43aae402517bc7cca949f3/PyYAML-6.0.2-cp313-cp313-win_amd64.whl", hash = "sha256:8388ee1976c416731879ac16da0aff3f63b286ffdd57cdeb95f3f2e085687563", size = 156446 },
 ]
 
+[[package]]
+name = "qtpy"
+version = "2.4.2"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "packaging" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/e5/10/51e0e50dd1e4a160c54ac0717b8ff11b2063d441e721c2037f61931cf38d/qtpy-2.4.2.tar.gz", hash = "sha256:9d6ec91a587cc1495eaebd23130f7619afa5cdd34a277acb87735b4ad7c65156", size = 66849 }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/0a/0c/58a1e48209b0b1220ca2368435573f39ff1fa3577b7eef913f8960c5d429/QtPy-2.4.2-py3-none-any.whl", hash = "sha256:5a696b1dd7a354cb330657da1d17c20c2190c72d4888ba923f8461da67aa1a1c", size = 95155 },
+]
+
 [[package]]
 name = "referencing"
 version = "0.35.1"
@@ -1211,6 +1342,7 @@ wheels = [
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+    { url = "https://files.pythonhosted.org/packages/f0/ca/e4106ac7e80efbabdf4bf91d3d32fc424e41418458251712f5672eada9ce/ruamel.yaml.clib-0.2.12-cp311-cp311-musllinux_1_2_aarch64.whl", hash = "sha256:1492a6051dab8d912fc2adeef0e8c72216b24d57bd896ea607cb90bb0c4981d3", size = 714498 },
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     { url = "https://files.pythonhosted.org/packages/b4/4f/b52f634c9548a9291a70dfce26ca7ebce388235c93588a1068028ea23fcc/ruamel.yaml.clib-0.2.12-cp311-cp311-win_amd64.whl", hash = "sha256:a274fb2cb086c7a3dea4322ec27f4cb5cc4b6298adb583ab0e211a4682f241eb", size = 118185 },
     { url = "https://files.pythonhosted.org/packages/48/41/e7a405afbdc26af961678474a55373e1b323605a4f5e2ddd4a80ea80f628/ruamel.yaml.clib-0.2.12-cp312-cp312-macosx_14_0_arm64.whl", hash = "sha256:20b0f8dc160ba83b6dcc0e256846e1a02d044e13f7ea74a3d1d56ede4e48c632", size = 133433 },
@@ -1219,6 +1351,7 @@ wheels = [
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+    { url = "https://files.pythonhosted.org/packages/db/5d/36619b61ffa2429eeaefaab4f3374666adf36ad8ac6330d855848d7d36fd/ruamel.yaml.clib-0.2.12-cp312-cp312-musllinux_1_2_aarch64.whl", hash = "sha256:b82a7c94a498853aa0b272fd5bc67f29008da798d4f93a2f9f289feb8426a58d", size = 715692 },
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+    { url = "https://files.pythonhosted.org/packages/87/b8/01c29b924dcbbed75cc45b30c30d565d763b9c4d540545a0eeecffb8f09c/ruamel.yaml.clib-0.2.12-cp313-cp313-musllinux_1_2_aarch64.whl", hash = "sha256:4f6f3eac23941b32afccc23081e1f50612bdbe4e982012ef4f5797986828cd01", size = 709059 },
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@@ -1538,6 +1672,25 @@ wheels = [
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 ]
 
+[[package]]
+name = "superqt"
+version = "0.7.0"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "pygments" },
+    { name = "qtpy" },
+    { name = "typing-extensions" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/4a/7b/10b854842f76b20fc8a13ea5b62f78346c84bf9664b7d54ee82e53d88b6d/superqt-0.7.0.tar.gz", hash = "sha256:fa8014a0ffead7f618a85346ac355ba5e9529b177f50caf5093edeec566c6f5d", size = 97558 }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/ec/77/47289ce2c607f72446811230ec96406ace44db7669e443793a13fd7b3486/superqt-0.7.0-py3-none-any.whl", hash = "sha256:395d3f511fe5143882eba6e9ffb8d79bd4c782b6d571c1edb4141cea977612d3", size = 91179 },
+]
+
+[package.optional-dependencies]
+iconify = [
+    { name = "pyconify" },
+]
+
 [[package]]
 name = "threadpoolctl"
 version = "3.5.0"

From 94d6d17bb1dd0637a660a8c3e654e00bdc30094b Mon Sep 17 00:00:00 2001
From: bruno-f-cruz <7049351+bruno-f-cruz@users.noreply.github.com>
Date: Wed, 25 Dec 2024 22:21:55 +0000
Subject: [PATCH 02/16] Add magicgui wrapper to generate forms from pydantic
 models

---
 .../magicgui.py                               | 194 ++++++++++++++++++
 1 file changed, 194 insertions(+)
 create mode 100644 src/aind_behavior_experiment_launcher/magicgui.py

diff --git a/src/aind_behavior_experiment_launcher/magicgui.py b/src/aind_behavior_experiment_launcher/magicgui.py
new file mode 100644
index 00000000..bbf64d72
--- /dev/null
+++ b/src/aind_behavior_experiment_launcher/magicgui.py
@@ -0,0 +1,194 @@
+from __future__ import annotations
+
+import importlib.util
+
+if importlib.util.find_spec("magicgui") is None:
+    raise ImportError(
+        "The 'magicgui' package is required to use this module. "
+        "Install the optional dependencies defined in `project.toml` "
+        "by running `pip install .[magicgui]`"
+    )
+
+
+from functools import partial
+from typing import Any, Iterable, Optional, Type
+
+from magicgui import event_loop
+from magicgui.types import Undefined
+from magicgui.widgets import (
+    Button,
+    CheckBox,
+    Container,
+    Textarea,
+    create_widget,
+)
+from magicgui.widgets.bases import ValueWidget
+from pydantic import BaseModel, TypeAdapter, ValidationError
+from pydantic.fields import FieldInfo, PydanticUndefined
+
+
+class _ValidationErrorSink:
+    def __init__(self, widget: Optional[ValueWidget] = None):
+        self._widget = widget
+        self._error: Optional[Exception] = None
+        self.clear()
+
+    def __call__(self, e: Exception | None):
+        self.update(e)
+
+    @property
+    def widget(self) -> Optional[ValueWidget]:
+        return self._widget
+
+    @property
+    def error(self) -> Optional[Exception]:
+        return self._error
+
+    def update(self, e: Exception | None):
+        self._error = e
+        if self._widget is not None:
+            self._widget.value = f"{self.error}"
+
+    def clear(self):
+        self.update(None)
+
+    def register_widget(self, widget: ValueWidget):
+        self._widget = widget
+
+
+def _container_updater(container, validator, error_sink: Optional[_ValidationErrorSink] = None):
+    # https://icon-sets.iconify.design/material-symbols/
+
+    null_checkbox: CheckBox = container[0]
+    input_widget: ValueWidget = container[1]
+    validation_button: Button = container[2]
+    if error_sink is None:
+        error_sink = _ValidationErrorSink()
+
+    is_null = null_checkbox.value
+    input_widget.enabled = not is_null
+    try:
+        if is_null:
+            value = None
+        else:
+            value = input_widget.value
+
+        value = validator(value)
+        if value is not None:
+            # in case the type adapter does something fancy
+            input_widget.value = value
+
+        validation_button.set_icon("material-symbols:check-circle-outline-rounded", "#0b7500")
+        error_sink.clear()
+    except ValidationError as e:
+        validation_button.set_icon("material-symbols:cancel", "#fd0000")
+        error_sink(e)
+
+
+def _make_widget_from_field(
+    field: FieldInfo,
+    name: str,
+    default: Any = Undefined,
+    *,
+    override_type: Optional[dict[str, Type[ValueWidget]]] = None,
+    validation_error_sink: Optional[_ValidationErrorSink] = None,
+) -> Container:
+    # Each field will be rendered as:
+    # - Left button for nullability
+    # - Value input
+    # - Right button for validation
+
+    if override_type is None:
+        override_type = {}
+    widget_type = override_type.get(name, None)
+
+    if default is Undefined:
+        default = field.get_default(call_default_factory=True)
+        if default is PydanticUndefined or default is None:
+            default = Undefined
+
+    container: Container = Container(layout="horizontal")
+
+    container.append(
+        CheckBox(
+            value=(default is Undefined),
+            label="N",
+        )
+    )
+    widget = create_widget(default, field.annotation, name=name, widget_type=widget_type)
+    container.append(widget)
+    container.append(Button(icon="material-symbols:check-circle-outline-rounded", icon_color="#0b7500", enabled=True))
+    container.tooltip = field.description
+    validator = TypeAdapter(field.rebuild_annotation()).validate_python
+    updater = partial(_container_updater, validator=validator, error_sink=validation_error_sink)
+    container.changed.connect(updater)
+    updater(container)
+    return container
+
+
+def create_container_from_model(
+    model: Type[BaseModel] | BaseModel,
+    *,
+    fields: Optional[Iterable[str]] = None,
+    override_type: Optional[dict[str, Type[ValueWidget]]] = None,
+    validation_error_sink: Optional[_ValidationErrorSink] = None,
+    populate_with_instance: bool = False,
+) -> "Container":
+    if fields is None:
+        fields = model.model_fields.keys()
+
+    if populate_with_instance:
+        if not isinstance(model, BaseModel):
+            raise ValueError("Cannot populate with instance if model is not an instance")
+
+    widgets = [
+        _make_widget_from_field(
+            field,
+            name,
+            getattr(model, name) if populate_with_instance else Undefined,
+            override_type=override_type,
+            validation_error_sink=validation_error_sink,
+        )
+        for name, field in model.model_fields.items()
+        if name in fields
+    ]
+
+    container = Container(widgets=widgets)
+    return container
+
+
+def create_form(
+    model: BaseModel | Type[BaseModel],
+    *,
+    fields: Optional[Iterable[str]] = None,
+    populate_with_instance: bool = False,
+    allow_errors: bool = False,
+) -> dict[str, Any]:
+    submit_button = Button(text="Submit")
+    error_stack = Textarea(enabled=False)
+    error_sink = _ValidationErrorSink(error_stack)
+    model_widget = create_container_from_model(
+        model, fields=fields, validation_error_sink=error_sink, populate_with_instance=populate_with_instance
+    )
+    container = Container(
+        widgets=[
+            submit_button,
+            model_widget,
+            error_stack,
+        ]
+    )
+    submit_button.changed.connect(container.close)
+    if isinstance(model, BaseModel):
+        container.native.setWindowTitle(type(model).__name__)
+    else:
+        container.native.setWindowTitle(model)
+    with event_loop():
+        container.show()
+
+    # TODO
+    # This is a big hack, but seems like investing
+    # too much time into an event driven solution is not worth it atm
+    if not allow_errors and error_sink.error is not None:
+        raise error_sink.error
+
+    return {getattr(widget[1], "name"): getattr(widget[1], "value") for widget in model_widget}

From d5c370789bbe1899d09372c38e769645e173b870 Mon Sep 17 00:00:00 2001
From: bruno-f-cruz <7049351+bruno-f-cruz@users.noreply.github.com>
Date: Wed, 25 Dec 2024 22:22:04 +0000
Subject: [PATCH 03/16] Improve import check syntax

---
 .../data_mapper/aind_data_schema.py                  |  9 ++++-----
 .../data_transfer/aind_watchdog.py                   | 12 ++++++------
 2 files changed, 10 insertions(+), 11 deletions(-)

diff --git a/src/aind_behavior_experiment_launcher/data_mapper/aind_data_schema.py b/src/aind_behavior_experiment_launcher/data_mapper/aind_data_schema.py
index 617a1e96..0b390ffb 100644
--- a/src/aind_behavior_experiment_launcher/data_mapper/aind_data_schema.py
+++ b/src/aind_behavior_experiment_launcher/data_mapper/aind_data_schema.py
@@ -1,14 +1,13 @@
 from __future__ import annotations
 
-try:
-    import aind_data_schema
-except ImportError as _e:
-    _e.add_note(
+import importlib.util
+
+if importlib.util.find_spec("aind_data_schema") is None:
+    raise ImportError(
         "The 'aind-data-schema' package is required to use this module. \
             Install the optional dependencies defined in `project.toml' \
                 by running `pip install .[aind-services]`"
     )
-    raise _e
 
 import abc
 import logging
diff --git a/src/aind_behavior_experiment_launcher/data_transfer/aind_watchdog.py b/src/aind_behavior_experiment_launcher/data_transfer/aind_watchdog.py
index d552e22a..5a3b2136 100644
--- a/src/aind_behavior_experiment_launcher/data_transfer/aind_watchdog.py
+++ b/src/aind_behavior_experiment_launcher/data_transfer/aind_watchdog.py
@@ -1,12 +1,12 @@
-try:
-    import aind_watchdog_service  # noqa: F401
-except ImportError as e:
-    e.add_note(
-        "The 'aind-watchdog-service' package is required to use this module. \
+import importlib.util
+
+if importlib.util.find_spec("aind_watchdog_service") is None:
+    raise ImportError(
+        "The 'aind_watchdog_service' package is required to use this module. \
             Install the optional dependencies defined in `project.toml' \
                 by running `pip install .[aind-services]`"
     )
-    raise
+
 
 import datetime
 import json

From dcf5f4c2096c20e839126134a87b65fe3e9525f6 Mon Sep 17 00:00:00 2001
From: bruno-f-cruz <7049351+bruno-f-cruz@users.noreply.github.com>
Date: Thu, 26 Dec 2024 09:28:29 +0000
Subject: [PATCH 04/16] Add ability to optionally exclude fields

---
 .../magicgui.py                               | 20 +++++++++++++------
 1 file changed, 14 insertions(+), 6 deletions(-)

diff --git a/src/aind_behavior_experiment_launcher/magicgui.py b/src/aind_behavior_experiment_launcher/magicgui.py
index bbf64d72..87517bfb 100644
--- a/src/aind_behavior_experiment_launcher/magicgui.py
+++ b/src/aind_behavior_experiment_launcher/magicgui.py
@@ -129,13 +129,16 @@ def _make_widget_from_field(
 def create_container_from_model(
     model: Type[BaseModel] | BaseModel,
     *,
-    fields: Optional[Iterable[str]] = None,
+    include_fields: Optional[Iterable[str]] = None,
+    exclude_fields: Optional[Iterable[str]] = None,
     override_type: Optional[dict[str, Type[ValueWidget]]] = None,
     validation_error_sink: Optional[_ValidationErrorSink] = None,
     populate_with_instance: bool = False,
 ) -> "Container":
-    if fields is None:
-        fields = model.model_fields.keys()
+    if include_fields is None:
+        include_fields = model.model_fields.keys()
+    if exclude_fields is None:
+        exclude_fields = []
 
     if populate_with_instance:
         if not isinstance(model, BaseModel):
@@ -150,7 +153,7 @@ def create_container_from_model(
             validation_error_sink=validation_error_sink,
         )
         for name, field in model.model_fields.items()
-        if name in fields
+        if (name in include_fields) and (name not in exclude_fields)
     ]
 
     container = Container(widgets=widgets)
@@ -160,7 +163,8 @@ def create_container_from_model(
 def create_form(
     model: BaseModel | Type[BaseModel],
     *,
-    fields: Optional[Iterable[str]] = None,
+    include_fields: Optional[Iterable[str]] = None,
+    exclude_fields: Optional[Iterable[str]] = None,
     populate_with_instance: bool = False,
     allow_errors: bool = False,
 ) -> dict[str, Any]:
@@ -168,7 +172,11 @@ def create_form(
     error_stack = Textarea(enabled=False)
     error_sink = _ValidationErrorSink(error_stack)
     model_widget = create_container_from_model(
-        model, fields=fields, validation_error_sink=error_sink, populate_with_instance=populate_with_instance
+        model,
+        include_fields=include_fields,
+        exclude_fields=exclude_fields,
+        validation_error_sink=error_sink,
+        populate_with_instance=populate_with_instance,
     )
     container = Container(
         widgets=[

From 39512ccb531a83618f285da5d1d9fe22cca8fd31 Mon Sep 17 00:00:00 2001
From: bruno-f-cruz <7049351+bruno-f-cruz@users.noreply.github.com>
Date: Thu, 26 Dec 2024 09:42:49 +0000
Subject: [PATCH 05/16] Ensure set is done outside the update loop context

---
 src/aind_behavior_experiment_launcher/magicgui.py | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/src/aind_behavior_experiment_launcher/magicgui.py b/src/aind_behavior_experiment_launcher/magicgui.py
index 87517bfb..2a2fcb1c 100644
--- a/src/aind_behavior_experiment_launcher/magicgui.py
+++ b/src/aind_behavior_experiment_launcher/magicgui.py
@@ -76,7 +76,8 @@ def _container_updater(container, validator, error_sink: Optional[_ValidationErr
         value = validator(value)
         if value is not None:
             # in case the type adapter does something fancy
-            input_widget.value = value
+            with input_widget.changed.blocked():
+                input_widget.set_value(value)
 
         validation_button.set_icon("material-symbols:check-circle-outline-rounded", "#0b7500")
         error_sink.clear()
@@ -187,9 +188,9 @@ def create_form(
     )
     submit_button.changed.connect(container.close)
     if isinstance(model, BaseModel):
-        container.native.setWindowTitle(type(model).__name__)
+        container.native.setWindowTitle(model.__class__.__name__)
     else:
-        container.native.setWindowTitle(model)
+        container.native.setWindowTitle(model.__name__)
     with event_loop():
         container.show()
 

From 56420da4ee736a43bb5a471e69d1f606b0b5f4d1 Mon Sep 17 00:00:00 2001
From: bruno-f-cruz <7049351+bruno-f-cruz@users.noreply.github.com>
Date: Thu, 26 Dec 2024 10:54:58 +0000
Subject: [PATCH 06/16] Block emissions of events when running ui element logic

---
 .../magicgui.py                               | 33 ++++++++++---------
 1 file changed, 17 insertions(+), 16 deletions(-)

diff --git a/src/aind_behavior_experiment_launcher/magicgui.py b/src/aind_behavior_experiment_launcher/magicgui.py
index 2a2fcb1c..11756553 100644
--- a/src/aind_behavior_experiment_launcher/magicgui.py
+++ b/src/aind_behavior_experiment_launcher/magicgui.py
@@ -66,24 +66,24 @@ def _container_updater(container, validator, error_sink: Optional[_ValidationErr
         error_sink = _ValidationErrorSink()
 
     is_null = null_checkbox.value
-    input_widget.enabled = not is_null
-    try:
-        if is_null:
-            value = None
-        else:
-            value = input_widget.value
-
-        value = validator(value)
-        if value is not None:
-            # in case the type adapter does something fancy
-            with input_widget.changed.blocked():
+    with input_widget.changed.blocked():
+        input_widget.enabled = not is_null
+        try:
+            if is_null:
+                value = None
+            else:
+                value = input_widget.value
+
+            value = validator(value)
+            if value is not None:
+                # in case the type adapter does something fancy
                 input_widget.set_value(value)
 
-        validation_button.set_icon("material-symbols:check-circle-outline-rounded", "#0b7500")
-        error_sink.clear()
-    except ValidationError as e:
-        validation_button.set_icon("material-symbols:cancel", "#fd0000")
-        error_sink(e)
+            validation_button.set_icon("material-symbols:check-circle-outline-rounded", "#0b7500")
+            error_sink.clear()
+        except ValidationError as e:
+            validation_button.set_icon("material-symbols:cancel", "#fd0000")
+            error_sink(e)
 
 
 def _make_widget_from_field(
@@ -117,6 +117,7 @@ def _make_widget_from_field(
         )
     )
     widget = create_widget(default, field.annotation, name=name, widget_type=widget_type)
+
     container.append(widget)
     container.append(Button(icon="material-symbols:check-circle-outline-rounded", icon_color="#0b7500", enabled=True))
     container.tooltip = field.description

From ac2a6ba9a98d9943be070cdf801cdc146320a1b9 Mon Sep 17 00:00:00 2001
From: bruno-f-cruz <7049351+bruno-f-cruz@users.noreply.github.com>
Date: Thu, 26 Dec 2024 19:34:54 +0000
Subject: [PATCH 07/16] Add helper functions with gui backend

---
 .../gui_helper.py                             | 144 ++++++++++++++++++
 1 file changed, 144 insertions(+)
 create mode 100644 src/aind_behavior_experiment_launcher/gui_helper.py

diff --git a/src/aind_behavior_experiment_launcher/gui_helper.py b/src/aind_behavior_experiment_launcher/gui_helper.py
new file mode 100644
index 00000000..cad666dc
--- /dev/null
+++ b/src/aind_behavior_experiment_launcher/gui_helper.py
@@ -0,0 +1,144 @@
+from magicgui import widgets as widgets
+import magicgui
+import magicgui.types
+from typing import Optional, TypeVar, List
+from magicgui.widgets.bases import BaseValueWidget
+
+import os
+from pathlib import Path
+
+T = TypeVar("T")
+
+
+def prompt_pick_file_from_list(
+    available_files: list[os.PathLike[str]],
+    *,
+    allow_manual_input: bool = True,
+    prompt: str = "Select a file:",
+) -> Optional[os.PathLike[str]]:
+    def _force_dst(src: BaseValueWidget, dst: BaseValueWidget):
+        with dst.changed.blocked():
+            print(dst.get_value())
+            dst.set_value(Path(src.get_value()))
+
+    container: widgets.Container = widgets.Container(layout="vertical")
+
+    # Add button to submit
+    submit_button = widgets.Button(text="Submit")
+    submit_button.changed.connect(container.close)
+    container.append(submit_button)
+
+    # Make the picker
+    _paths = [Path(x) for x in available_files]
+    _path_names = [x.name for x in _paths]
+    files = widgets.ComboBox(
+        choices=_path_names,
+        label=prompt,
+    )
+    container.append(files)
+    file_picker = widgets.FileEdit(
+        mode=magicgui.types.FileDialogMode.EXISTING_FILE,
+        label="Or provide a file path:",
+    )
+    container.append(file_picker)
+    file_picker.enabled = allow_manual_input
+
+    files.changed.connect(lambda _: _force_dst(files, file_picker))
+    file_picker.changed.connect(lambda _: _force_dst(file_picker, files))
+
+    container.native.setWindowTitle(prompt)
+    with magicgui.event_loop():
+        container.show()
+
+    if files.get_value() is not None:
+        return _paths[_path_names.index(files.get_value())]
+
+    _p = file_picker.get_value()
+    if isinstance(_p, tuple):
+        _p = _p[0]
+    return _p
+
+
+def prompt_pick_from_list(
+    values: list[str],
+    *,
+    prompt: str = "Select an option:",
+) -> Optional[str]:
+    container: widgets.Container = widgets.Container(layout="vertical")
+
+    # Add button to submit
+    submit_button = widgets.Button(text="Submit")
+    submit_button.changed.connect(container.close)
+    container.append(submit_button)
+
+    # Make the picker
+    files = widgets.ComboBox(
+        value=values,
+        label=prompt,
+    )
+    container.append(files)
+    file_picker = widgets.FileEdit(
+        mode=magicgui.types.FileDialogMode.EXISTING_FILE,
+        label="Or provide a file path:",
+    )
+    container.append(file_picker)
+
+    container.native.setWindowTitle(prompt)
+    with magicgui.event_loop():
+        container.show()
+
+    return files.get_value()
+
+
+def prompt_yes_no_question(*, prompt: str = "Select one option:") -> Optional[bool]:
+    _container_outer: widgets.Container = widgets.Container(layout="vertical")
+    _container_inner: widgets.Container = widgets.Container(layout="horizontal")
+    print(prompt)
+    _p = widgets.Label(value=prompt)
+
+    _w_yes = widgets.Button(value=True, text="Yes")
+    _w_no = widgets.Button(value=False, text="No")
+
+    _result: List[Optional[bool]] = [None]
+    _w_yes.changed.connect(lambda _: _result.__setitem__(0, True))
+    _w_no.changed.connect(lambda _: _result.__setitem__(0, False))
+
+    _w_yes.changed.connect(_container_outer.close)
+    _w_no.changed.connect(_container_outer.close)
+
+    _container_inner.append(_w_yes)
+    _container_inner.append(_w_no)
+    _container_outer.append(_p)
+    _container_outer.append(_container_inner)
+
+    _container_outer.native.setWindowTitle(prompt)
+    with magicgui.event_loop():
+        _container_outer.show()
+
+    return _result[0]
+
+
+def choose_subject(subject_list: SubjectDataBase) -> Optional[str]:
+    def _lock_to_index(index_widget: BaseValueWidget, dst: BaseValueWidget):
+        with dst.changed.blocked():
+            dst.set_value(index_widget.get_value())
+
+    _subject = list(subject_list.subjects.keys())
+    _task_logic = [str(getattr(x, "task_logic_target", None)) for x in subject_list.subjects.values()]
+    _choices = [f"{subject} => {task_logic}" for subject, task_logic in zip(_subject, _task_logic)]
+
+    container = widgets.Container(layout="vertical")
+    subjects = widgets.Select(choices=_choices, allow_multiple=False, label="Subject")
+    btn = widgets.Button(text="Submit")
+    btn.changed.connect(container.close)
+
+    container.append(btn)
+    container.append(subjects)
+
+    container.show(run=True)
+
+    v = subjects.get_value()
+    if v is None:
+        return None
+    else:
+        return _subject[_choices.index(v[0])]

From 9ee2f70163947f895993599c91dc309129881316 Mon Sep 17 00:00:00 2001
From: bruno-f-cruz <7049351+bruno-f-cruz@users.noreply.github.com>
Date: Fri, 27 Dec 2024 13:57:33 +0000
Subject: [PATCH 08/16] Add uv.lock check

---
 .github/workflows/ci.yml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index eb5b066d..10564c9a 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -25,6 +25,8 @@ jobs:
 
       - name: Set up Python ${{ matrix.python-version }}
         run: uv python install ${{ matrix.python-version }}
+      - name: Check if uv.lock is up-to-date
+        run: uv lock --check
       - name: Install dependencies
         run: uv sync --extra dev
       - name: Run ruff format

From 3473bcf6688f96ea7b6dac4226c1e15d765eeb78 Mon Sep 17 00:00:00 2001
From: bruno-f-cruz <7049351+bruno-f-cruz@users.noreply.github.com>
Date: Sun, 29 Dec 2024 09:58:56 +0000
Subject: [PATCH 09/16] Add prompt for experimenter name

---
 .../gui_helper.py                             | 52 ++++++++++++++++---
 1 file changed, 46 insertions(+), 6 deletions(-)

diff --git a/src/aind_behavior_experiment_launcher/gui_helper.py b/src/aind_behavior_experiment_launcher/gui_helper.py
index cad666dc..b8cb98e1 100644
--- a/src/aind_behavior_experiment_launcher/gui_helper.py
+++ b/src/aind_behavior_experiment_launcher/gui_helper.py
@@ -1,11 +1,16 @@
-from magicgui import widgets as widgets
+import logging
+import os
+from pathlib import Path
+from typing import List, Optional, TypeVar
+
 import magicgui
 import magicgui.types
-from typing import Optional, TypeVar, List
+from aind_behavior_services.db_utils import SubjectDataBase
+from magicgui import widgets as widgets
+from magicgui.types import Undefined, _Undefined
 from magicgui.widgets.bases import BaseValueWidget
 
-import os
-from pathlib import Path
+logger = logging.getLogger(__name__)
 
 T = TypeVar("T")
 
@@ -127,7 +132,7 @@ def _lock_to_index(index_widget: BaseValueWidget, dst: BaseValueWidget):
     _task_logic = [str(getattr(x, "task_logic_target", None)) for x in subject_list.subjects.values()]
     _choices = [f"{subject} => {task_logic}" for subject, task_logic in zip(_subject, _task_logic)]
 
-    container = widgets.Container(layout="vertical")
+    container: widgets.Container = widgets.Container(layout="vertical")
     subjects = widgets.Select(choices=_choices, allow_multiple=False, label="Subject")
     btn = widgets.Button(text="Submit")
     btn.changed.connect(container.close)
@@ -135,10 +140,45 @@ def _lock_to_index(index_widget: BaseValueWidget, dst: BaseValueWidget):
     container.append(btn)
     container.append(subjects)
 
-    container.show(run=True)
+    with magicgui.event_loop():
+        container.show()
 
     v = subjects.get_value()
     if v is None:
         return None
     else:
         return _subject[_choices.index(v[0])]
+
+
+def prompt_experimenter(
+    *, default: List[str] | _Undefined = Undefined, allow_empty_string: bool = True
+) -> Optional[List[str]]:
+    def _close_if_valid(container: widgets.Container, list_edit: widgets.ListEdit):
+        if r := list_edit.get_value():
+            if len(r) > 0:
+                container.close()
+
+    if default is Undefined:
+        default = [""]
+
+    container: widgets.Container = widgets.Container(layout="vertical")
+    w_experimenter = widgets.ListEdit(value=default)
+    btn = widgets.Button(text="Submit")
+    btn.changed.connect(lambda _: _close_if_valid(container, w_experimenter))
+    container.append(w_experimenter)
+    container.append(btn)
+
+    container.native.setWindowTitle("Enter experimenters: ")
+    with magicgui.event_loop():
+        container.show()
+
+    experimenter = w_experimenter.get_value()
+    if experimenter is None:
+        return None
+    experimenter = [x.strip() for x in experimenter if x.strip() != ""]
+    if len(experimenter) == 0:
+        if not allow_empty_string:
+            logger.error("Experimenter name is not valid.")
+        else:
+            return None
+    return experimenter

From eae4eb8b9be96a4eed551bc479c7973bc428b190 Mon Sep 17 00:00:00 2001
From: bruno-f-cruz <7049351+bruno-f-cruz@users.noreply.github.com>
Date: Fri, 3 Jan 2025 16:08:20 -0800
Subject: [PATCH 10/16] Remove reliance on ui_helper to builder metadata
 information

---
 .../{magicgui.py => _magicgui.py}             |  0
 .../launcher/_base.py                         | 12 ++++-----
 .../ui_helper.py                              | 25 +++----------------
 3 files changed, 10 insertions(+), 27 deletions(-)
 rename src/aind_behavior_experiment_launcher/{magicgui.py => _magicgui.py} (100%)

diff --git a/src/aind_behavior_experiment_launcher/magicgui.py b/src/aind_behavior_experiment_launcher/_magicgui.py
similarity index 100%
rename from src/aind_behavior_experiment_launcher/magicgui.py
rename to src/aind_behavior_experiment_launcher/_magicgui.py
diff --git a/src/aind_behavior_experiment_launcher/launcher/_base.py b/src/aind_behavior_experiment_launcher/launcher/_base.py
index ece95b90..5f99430a 100644
--- a/src/aind_behavior_experiment_launcher/launcher/_base.py
+++ b/src/aind_behavior_experiment_launcher/launcher/_base.py
@@ -179,13 +179,13 @@ def main(self) -> None:
             return
 
     def _ui_prompt(self) -> Self:
-        logger.info(
-            self._ui_helper.make_header(
-                task_logic_schema_model=self.task_logic_schema_model,
-                rig_schema_model=self.rig_schema_model,
-                session_schema_model=self.session_schema_model,
-            )
+        self._ui_helper.make_header()
+        _str = (
+            f"Rig ({self.rig_schema_model.__name__}) Schema Version: {self.rig_schema_model.model_construct().version}\n"
+            f"Session ({self.session_schema_model.__name__}) Schema Version: {self.session_schema_model.model_construct().version}\n"
+            f"TaskLogic ({self.task_logic_schema_model.__name__}) Schema Version: {self.task_logic_schema_model.model_construct().version}\n"
         )
+        logger.info(_str)
         if self._debug_mode:
             self._print_diagnosis()
 
diff --git a/src/aind_behavior_experiment_launcher/ui_helper.py b/src/aind_behavior_experiment_launcher/ui_helper.py
index 2bdf6bb7..a4ffca77 100644
--- a/src/aind_behavior_experiment_launcher/ui_helper.py
+++ b/src/aind_behavior_experiment_launcher/ui_helper.py
@@ -3,9 +3,6 @@
 from typing import Any, Callable, List, Optional, TypeVar
 
 from aind_behavior_services.db_utils import SubjectDataBase
-from aind_behavior_services.rig import AindBehaviorRigModel
-from aind_behavior_services.session import AindBehaviorSessionModel
-from aind_behavior_services.task_logic import AindBehaviorTaskLogicModel
 from pydantic import BaseModel, TypeAdapter
 
 logger = logging.getLogger(__name__)
@@ -88,35 +85,21 @@ def prompt_get_notes() -> str:
         notes = str(input("Enter notes:"))
         return notes
 
-    def make_header(
-        self,
-        task_logic_schema_model: type[AindBehaviorTaskLogicModel],
-        rig_schema_model: type[AindBehaviorRigModel],
-        session_schema_model: type[AindBehaviorSessionModel],
-    ) -> str:
+    def make_header(self) -> None:
         _HEADER = r"""
 
-        ██████╗██╗      █████╗ ██████╗ ███████╗
+         ██████╗██╗      █████╗ ██████╗ ███████╗
         ██╔════╝██║     ██╔══██╗██╔══██╗██╔════╝
         ██║     ██║     ███████║██████╔╝█████╗
         ██║     ██║     ██╔══██║██╔══██╗██╔══╝
         ╚██████╗███████╗██║  ██║██████╔╝███████╗
-        ╚═════╝╚══════╝╚═╝  ╚═╝╚═════╝ ╚══════╝
+         ╚═════╝╚══════╝╚═╝  ╚═╝╚═════╝ ╚══════╝
 
         Command-line-interface Launcher for AIND Behavior Experiments
         Press Control+C to exit at any time.
         """
 
-        _str = (
-            "-------------------------------\n"
-            f"{_HEADER}\n"
-            f"TaskLogic ({task_logic_schema_model.__name__}) Schema Version: {task_logic_schema_model.model_construct().version}\n"
-            f"Rig ({rig_schema_model.__name__}) Schema Version: {rig_schema_model.model_construct().version}\n"
-            f"Session ({session_schema_model.__name__}) Schema Version: {session_schema_model.model_construct().version}\n"
-            "-------------------------------"
-        )
-
-        return _str
+        self._print(_HEADER)
 
 
 TModel = TypeVar("TModel", bound=BaseModel)

From abf5b3b17c848c49b401ddf3657c2277270e0a1b Mon Sep 17 00:00:00 2001
From: bruno-f-cruz <7049351+bruno-f-cruz@users.noreply.github.com>
Date: Fri, 3 Jan 2025 16:08:41 -0800
Subject: [PATCH 11/16] Add notes and header ui elements

---
 .../gui_helper.py                             | 55 ++++++++++++++++++-
 1 file changed, 54 insertions(+), 1 deletion(-)

diff --git a/src/aind_behavior_experiment_launcher/gui_helper.py b/src/aind_behavior_experiment_launcher/gui_helper.py
index b8cb98e1..011dae74 100644
--- a/src/aind_behavior_experiment_launcher/gui_helper.py
+++ b/src/aind_behavior_experiment_launcher/gui_helper.py
@@ -9,6 +9,7 @@
 from magicgui import widgets as widgets
 from magicgui.types import Undefined, _Undefined
 from magicgui.widgets.bases import BaseValueWidget
+from qtpy.QtCore import Qt
 
 logger = logging.getLogger(__name__)
 
@@ -98,7 +99,6 @@ def prompt_pick_from_list(
 def prompt_yes_no_question(*, prompt: str = "Select one option:") -> Optional[bool]:
     _container_outer: widgets.Container = widgets.Container(layout="vertical")
     _container_inner: widgets.Container = widgets.Container(layout="horizontal")
-    print(prompt)
     _p = widgets.Label(value=prompt)
 
     _w_yes = widgets.Button(value=True, text="Yes")
@@ -182,3 +182,56 @@ def _close_if_valid(container: widgets.Container, list_edit: widgets.ListEdit):
         else:
             return None
     return experimenter
+
+
+def prompt_get_notes() -> str:
+    container: widgets.Container = widgets.Container(layout="vertical")
+
+    # Add button to submit
+    submit_button = widgets.Button(text="Submit")
+    submit_button.changed.connect(container.close)
+    container.append(submit_button)
+
+    # Make the picker
+    notes_ui = widgets.TextEdit()
+    container.append(notes_ui)
+    container.native.setWindowTitle("Enter notes:")
+
+    with magicgui.event_loop():
+        container.show()
+
+    return notes_ui.get_value()
+
+
+def make_header() -> None:
+    _HEADER = """\n
+     ██████╗██╗      █████╗ ██████╗ ███████╗
+    ██╔════╝██║     ██╔══██╗██╔══██╗██╔════╝
+    ██║     ██║     ███████║██████╔╝█████╗
+    ██║     ██║     ██╔══██║██╔══██╗██╔══╝
+    ╚██████╗███████╗██║  ██║██████╔╝███████╗
+     ╚═════╝╚══════╝╚═╝  ╚═╝╚═════╝ ╚══════╝
+    """
+
+    sub_text = """
+    Command-line-interface Launcher for AIND Behavior Experiments
+    Press Control+C to exit at any time.
+    """
+
+    container = widgets.Container()
+    text_ui = widgets.Label(value=_HEADER)
+    text_ui.native.setTextFormat(Qt.TextFormat.MarkdownText)
+    font = text_ui.native.font()
+    font.setPointSize(15)
+    font.setFamily("Courier New")
+    text_ui.native.setFont(font)
+    sub_text_ui = widgets.Label(value=sub_text)
+    ok_ui = widgets.Button(text="Close")
+    container.append(text_ui)
+    container.append(sub_text_ui)
+    container.append(ok_ui)
+    ok_ui.clicked.connect(container.close)
+
+    container.native.setWindowTitle("CLABE")
+    with magicgui.event_loop():
+        container.show()

From c14e96ccf98dd310fd14633b9297dcfa24f963bd Mon Sep 17 00:00:00 2001
From: bruno-f-cruz <7049351+bruno-f-cruz@users.noreply.github.com>
Date: Wed, 22 Jan 2025 09:52:25 -0800
Subject: [PATCH 12/16] Remove print statement

---
 src/aind_behavior_experiment_launcher/gui_helper.py | 1 -
 1 file changed, 1 deletion(-)

diff --git a/src/aind_behavior_experiment_launcher/gui_helper.py b/src/aind_behavior_experiment_launcher/gui_helper.py
index 011dae74..8e29d341 100644
--- a/src/aind_behavior_experiment_launcher/gui_helper.py
+++ b/src/aind_behavior_experiment_launcher/gui_helper.py
@@ -24,7 +24,6 @@ def prompt_pick_file_from_list(
 ) -> Optional[os.PathLike[str]]:
     def _force_dst(src: BaseValueWidget, dst: BaseValueWidget):
         with dst.changed.blocked():
-            print(dst.get_value())
             dst.set_value(Path(src.get_value()))
 
     container: widgets.Container = widgets.Container(layout="vertical")

From 49304d992a8f8ea82254dcc5416bc239869766cb Mon Sep 17 00:00:00 2001
From: bruno-f-cruz <7049351+bruno-f-cruz@users.noreply.github.com>
Date: Fri, 14 Mar 2025 18:09:15 -0700
Subject: [PATCH 13/16] Update lock file

---
 uv.lock | 207 +++++++++++++++++++++++++++++---------------------------
 1 file changed, 108 insertions(+), 99 deletions(-)

diff --git a/uv.lock b/uv.lock
index 46b6e417..2d87338f 100644
--- a/uv.lock
+++ b/uv.lock
@@ -1,4 +1,5 @@
 version = 1
+revision = 1
 requires-python = ">=3.11"
 resolution-markers = [
     "python_full_version >= '3.12'",
@@ -66,8 +67,10 @@ magicgui = [
 requires-dist = [
     { name = "aind-behavior-experiment-launcher", extras = ["aind-services"], marker = "extra == 'dev'" },
     { name = "aind-behavior-experiment-launcher", extras = ["aind-services"], marker = "extra == 'docs'" },
-    { name = "aind-behavior-services", specifier = ">=0.8.0,<0.9.0" },
-    { name = "aind-data-schema", marker = "extra == 'aind-services'", specifier = "<=1.2" },
+    { name = "aind-behavior-experiment-launcher", extras = ["magicgui"], marker = "extra == 'dev'" },
+    { name = "aind-behavior-services", specifier = "<1" },
+    { name = "aind-behavior-video-transformation", marker = "extra == 'aind-services'" },
+    { name = "aind-data-schema", marker = "extra == 'aind-services'", specifier = "<2" },
     { name = "aind-slims-api", specifier = "<0.2" },
     { name = "aind-watchdog-service", marker = "extra == 'aind-services'" },
     { name = "autodoc-pydantic", marker = "extra == 'docs'" },
@@ -86,6 +89,7 @@ requires-dist = [
     { name = "sphinx-jsonschema", marker = "extra == 'docs'" },
     { name = "sphinx-mdinclude", marker = "extra == 'docs'" },
 ]
+provides-extras = ["aind-services", "magicgui", "dev", "docs"]
 
 [[package]]
 name = "aind-behavior-services"
@@ -106,14 +110,14 @@ wheels = [
 
 [[package]]
 name = "aind-behavior-video-transformation"
-version = "0.1.6"
+version = "0.1.7"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "aind-data-transformation" },
 ]
-sdist = { url = "https://files.pythonhosted.org/packages/c7/dd/8b377119685163d3ffc4704c9e403cc60f6bca42420b91b09f2a22a0cdc4/aind_behavior_video_transformation-0.1.6.tar.gz", hash = "sha256:1d1d01ade2ffa4c4993931c89ad6c688bcbd330e9a68113f2192ed4d8bab6640", size = 590008 }
+sdist = { url = "https://files.pythonhosted.org/packages/21/48/c6dccbeaafa363aa54077d678b2c479d9264203eb043265835e8c3f97cc3/aind_behavior_video_transformation-0.1.7.tar.gz", hash = "sha256:23044acf06398408b22ebfbddacffa96b815a55724ea6af08f9c1fba920e2ea0", size = 589474 }
 wheels = [
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+    { url = "https://files.pythonhosted.org/packages/9c/9b/a372ef07f6ed7407e20b48519c86706b0fe5d9b8c47097695a6483c548e3/aind_behavior_video_transformation-0.1.7-py3-none-any.whl", hash = "sha256:fb9de926129a69b7ab3fe2a43353982b720b3b60c3ec72c0926db0eea6f8226e", size = 12433 },
 ]
 
 [[package]]
@@ -656,18 +660,6 @@ wheels = [
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 ]
 
-[[package]]
-name = "markdown-it-py"
-version = "3.0.0"
-source = { registry = "https://pypi.org/simple" }
-dependencies = [
-    { name = "mdurl" },
-]
-sdist = { url = "https://files.pythonhosted.org/packages/38/71/3b932df36c1a044d397a1f92d1cf91ee0a503d91e470cbd670aa66b07ed0/markdown-it-py-3.0.0.tar.gz", hash = "sha256:e3f60a94fa066dc52ec76661e37c851cb232d92f9886b15cb560aaada2df8feb", size = 74596 }
-wheels = [
-    { url = "https://files.pythonhosted.org/packages/42/d7/1ec15b46af6af88f19b8e5ffea08fa375d433c998b8a7639e76935c14f1f/markdown_it_py-3.0.0-py3-none-any.whl", hash = "sha256:355216845c60bd96232cd8d8c40e8f9765cc86f46880e43a8fd22dc1a1a8cab1", size = 87528 },
-]
-
 [[package]]
 name = "magicgui"
 version = "0.10.0"
@@ -689,6 +681,18 @@ pyqt6 = [
     { name = "pyqt6" },
 ]
 
+[[package]]
+name = "markdown-it-py"
+version = "3.0.0"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "mdurl" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/38/71/3b932df36c1a044d397a1f92d1cf91ee0a503d91e470cbd670aa66b07ed0/markdown-it-py-3.0.0.tar.gz", hash = "sha256:e3f60a94fa066dc52ec76661e37c851cb232d92f9886b15cb560aaada2df8feb", size = 74596 }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/42/d7/1ec15b46af6af88f19b8e5ffea08fa375d433c998b8a7639e76935c14f1f/markdown_it_py-3.0.0-py3-none-any.whl", hash = "sha256:355216845c60bd96232cd8d8c40e8f9765cc86f46880e43a8fd22dc1a1a8cab1", size = 87528 },
+]
+
 [[package]]
 name = "markupsafe"
 version = "3.0.2"
@@ -885,31 +889,38 @@ wheels = [
 
 [[package]]
 name = "psygnal"
-version = "0.11.1"
+version = "0.12.0"
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From 81c2229af215c881789b6e4b12460e03254ecd1d Mon Sep 17 00:00:00 2001
From: bruno-f-cruz <7049351+bruno-f-cruz@users.noreply.github.com>
Date: Fri, 14 Mar 2025 18:12:57 -0700
Subject: [PATCH 14/16] Revert change

---
 src/aind_behavior_experiment_launcher/launcher/_base.py | 8 +-------
 1 file changed, 1 insertion(+), 7 deletions(-)

diff --git a/src/aind_behavior_experiment_launcher/launcher/_base.py b/src/aind_behavior_experiment_launcher/launcher/_base.py
index 20487ab9..a5864463 100644
--- a/src/aind_behavior_experiment_launcher/launcher/_base.py
+++ b/src/aind_behavior_experiment_launcher/launcher/_base.py
@@ -281,13 +281,7 @@ def main(self) -> None:
             return
 
     def _ui_prompt(self) -> Self:
-        self._ui_helper.make_header()
-        _str = (
-            f"Rig ({self.rig_schema_model.__name__}) Schema Version: {self.rig_schema_model.model_construct().version}\n"
-            f"Session ({self.session_schema_model.__name__}) Schema Version: {self.session_schema_model.model_construct().version}\n"
-            f"TaskLogic ({self.task_logic_schema_model.__name__}) Schema Version: {self.task_logic_schema_model.model_construct().version}\n"
-        )
-        logger.info(_str)
+        logger.info(self.make_header())
         if self._debug_mode:
             self._print_debug()
 

From 3aa708e557d83a6bc5884dd2cb2a61e92e7a23cd Mon Sep 17 00:00:00 2001
From: bruno-f-cruz <7049351+bruno-f-cruz@users.noreply.github.com>
Date: Sun, 16 Mar 2025 17:34:03 -0700
Subject: [PATCH 15/16] Refactor to dev

---
 examples/behavior_launcher.py                 |   3 +-
 .../gui_helper.py                             | 236 ------------------
 .../launcher/behavior_launcher.py             |  49 +---
 .../{ => ui}/_magicgui.py                     |   0
 .../ui/gui_helper.py                          | 127 ++++++++++
 tests/test_ui.py                              |  12 -
 6 files changed, 131 insertions(+), 296 deletions(-)
 delete mode 100644 src/aind_behavior_experiment_launcher/gui_helper.py
 rename src/aind_behavior_experiment_launcher/{ => ui}/_magicgui.py (100%)
 create mode 100644 src/aind_behavior_experiment_launcher/ui/gui_helper.py

diff --git a/examples/behavior_launcher.py b/examples/behavior_launcher.py
index debb2da6..890e73a4 100644
--- a/examples/behavior_launcher.py
+++ b/examples/behavior_launcher.py
@@ -17,6 +17,7 @@
     BehaviorServicesFactoryManager,
     DefaultBehaviorPicker,
 )
+from aind_behavior_experiment_launcher.ui import gui_helper
 
 logger = logging.getLogger(__name__)
 
@@ -104,7 +105,7 @@ def make_launcher():
         session_schema_model=AindBehaviorSessionModel,
         task_logic_schema_model=TaskLogicModel,
         data_dir=data_dir,
-        picker=DefaultBehaviorPicker(config_library_dir=Path(LIB_CONFIG)),
+        picker=DefaultBehaviorPicker(config_library_dir=Path(LIB_CONFIG), ui_helper=gui_helper.GuiHelper()),
         temp_dir=Path(r"./local/.temp"),
         allow_dirty=True,
         skip_hardware_validation=True,
diff --git a/src/aind_behavior_experiment_launcher/gui_helper.py b/src/aind_behavior_experiment_launcher/gui_helper.py
deleted file mode 100644
index 8e29d341..00000000
--- a/src/aind_behavior_experiment_launcher/gui_helper.py
+++ /dev/null
@@ -1,236 +0,0 @@
-import logging
-import os
-from pathlib import Path
-from typing import List, Optional, TypeVar
-
-import magicgui
-import magicgui.types
-from aind_behavior_services.db_utils import SubjectDataBase
-from magicgui import widgets as widgets
-from magicgui.types import Undefined, _Undefined
-from magicgui.widgets.bases import BaseValueWidget
-from qtpy.QtCore import Qt
-
-logger = logging.getLogger(__name__)
-
-T = TypeVar("T")
-
-
-def prompt_pick_file_from_list(
-    available_files: list[os.PathLike[str]],
-    *,
-    allow_manual_input: bool = True,
-    prompt: str = "Select a file:",
-) -> Optional[os.PathLike[str]]:
-    def _force_dst(src: BaseValueWidget, dst: BaseValueWidget):
-        with dst.changed.blocked():
-            dst.set_value(Path(src.get_value()))
-
-    container: widgets.Container = widgets.Container(layout="vertical")
-
-    # Add button to submit
-    submit_button = widgets.Button(text="Submit")
-    submit_button.changed.connect(container.close)
-    container.append(submit_button)
-
-    # Make the picker
-    _paths = [Path(x) for x in available_files]
-    _path_names = [x.name for x in _paths]
-    files = widgets.ComboBox(
-        choices=_path_names,
-        label=prompt,
-    )
-    container.append(files)
-    file_picker = widgets.FileEdit(
-        mode=magicgui.types.FileDialogMode.EXISTING_FILE,
-        label="Or provide a file path:",
-    )
-    container.append(file_picker)
-    file_picker.enabled = allow_manual_input
-
-    files.changed.connect(lambda _: _force_dst(files, file_picker))
-    file_picker.changed.connect(lambda _: _force_dst(file_picker, files))
-
-    container.native.setWindowTitle(prompt)
-    with magicgui.event_loop():
-        container.show()
-
-    if files.get_value() is not None:
-        return _paths[_path_names.index(files.get_value())]
-
-    _p = file_picker.get_value()
-    if isinstance(_p, tuple):
-        _p = _p[0]
-    return _p
-
-
-def prompt_pick_from_list(
-    values: list[str],
-    *,
-    prompt: str = "Select an option:",
-) -> Optional[str]:
-    container: widgets.Container = widgets.Container(layout="vertical")
-
-    # Add button to submit
-    submit_button = widgets.Button(text="Submit")
-    submit_button.changed.connect(container.close)
-    container.append(submit_button)
-
-    # Make the picker
-    files = widgets.ComboBox(
-        value=values,
-        label=prompt,
-    )
-    container.append(files)
-    file_picker = widgets.FileEdit(
-        mode=magicgui.types.FileDialogMode.EXISTING_FILE,
-        label="Or provide a file path:",
-    )
-    container.append(file_picker)
-
-    container.native.setWindowTitle(prompt)
-    with magicgui.event_loop():
-        container.show()
-
-    return files.get_value()
-
-
-def prompt_yes_no_question(*, prompt: str = "Select one option:") -> Optional[bool]:
-    _container_outer: widgets.Container = widgets.Container(layout="vertical")
-    _container_inner: widgets.Container = widgets.Container(layout="horizontal")
-    _p = widgets.Label(value=prompt)
-
-    _w_yes = widgets.Button(value=True, text="Yes")
-    _w_no = widgets.Button(value=False, text="No")
-
-    _result: List[Optional[bool]] = [None]
-    _w_yes.changed.connect(lambda _: _result.__setitem__(0, True))
-    _w_no.changed.connect(lambda _: _result.__setitem__(0, False))
-
-    _w_yes.changed.connect(_container_outer.close)
-    _w_no.changed.connect(_container_outer.close)
-
-    _container_inner.append(_w_yes)
-    _container_inner.append(_w_no)
-    _container_outer.append(_p)
-    _container_outer.append(_container_inner)
-
-    _container_outer.native.setWindowTitle(prompt)
-    with magicgui.event_loop():
-        _container_outer.show()
-
-    return _result[0]
-
-
-def choose_subject(subject_list: SubjectDataBase) -> Optional[str]:
-    def _lock_to_index(index_widget: BaseValueWidget, dst: BaseValueWidget):
-        with dst.changed.blocked():
-            dst.set_value(index_widget.get_value())
-
-    _subject = list(subject_list.subjects.keys())
-    _task_logic = [str(getattr(x, "task_logic_target", None)) for x in subject_list.subjects.values()]
-    _choices = [f"{subject} => {task_logic}" for subject, task_logic in zip(_subject, _task_logic)]
-
-    container: widgets.Container = widgets.Container(layout="vertical")
-    subjects = widgets.Select(choices=_choices, allow_multiple=False, label="Subject")
-    btn = widgets.Button(text="Submit")
-    btn.changed.connect(container.close)
-
-    container.append(btn)
-    container.append(subjects)
-
-    with magicgui.event_loop():
-        container.show()
-
-    v = subjects.get_value()
-    if v is None:
-        return None
-    else:
-        return _subject[_choices.index(v[0])]
-
-
-def prompt_experimenter(
-    *, default: List[str] | _Undefined = Undefined, allow_empty_string: bool = True
-) -> Optional[List[str]]:
-    def _close_if_valid(container: widgets.Container, list_edit: widgets.ListEdit):
-        if r := list_edit.get_value():
-            if len(r) > 0:
-                container.close()
-
-    if default is Undefined:
-        default = [""]
-
-    container: widgets.Container = widgets.Container(layout="vertical")
-    w_experimenter = widgets.ListEdit(value=default)
-    btn = widgets.Button(text="Submit")
-    btn.changed.connect(lambda _: _close_if_valid(container, w_experimenter))
-    container.append(w_experimenter)
-    container.append(btn)
-
-    container.native.setWindowTitle("Enter experimenters: ")
-    with magicgui.event_loop():
-        container.show()
-
-    experimenter = w_experimenter.get_value()
-    if experimenter is None:
-        return None
-    experimenter = [x.strip() for x in experimenter if x.strip() != ""]
-    if len(experimenter) == 0:
-        if not allow_empty_string:
-            logger.error("Experimenter name is not valid.")
-        else:
-            return None
-    return experimenter
-
-
-def prompt_get_notes() -> str:
-    container: widgets.Container = widgets.Container(layout="vertical")
-
-    # Add button to submit
-    submit_button = widgets.Button(text="Submit")
-    submit_button.changed.connect(container.close)
-    container.append(submit_button)
-
-    # Make the picker
-    notes_ui = widgets.TextEdit()
-    container.append(notes_ui)
-    container.native.setWindowTitle("Enter notes:")
-
-    with magicgui.event_loop():
-        container.show()
-
-    return notes_ui.get_value()
-
-
-def make_header() -> None:
-    _HEADER = """\n
-     ██████╗██╗      █████╗ ██████╗ ███████╗
-    ██╔════╝██║     ██╔══██╗██╔══██╗██╔════╝
-    ██║     ██║     ███████║██████╔╝█████╗
-    ██║     ██║     ██╔══██║██╔══██╗██╔══╝
-    ╚██████╗███████╗██║  ██║██████╔╝███████╗
-     ╚═════╝╚══════╝╚═╝  ╚═╝╚═════╝ ╚══════╝
-    """
-
-    sub_text = """
-    Command-line-interface Launcher for AIND Behavior Experiments
-    Press Control+C to exit at any time.
-    """
-
-    container = widgets.Container()
-    text_ui = widgets.Label(value=_HEADER)
-    text_ui.native.setTextFormat(Qt.TextFormat.MarkdownText)
-    font = text_ui.native.font()
-    font.setPointSize(15)
-    font.setFamily("Courier New")
-    text_ui.native.setFont(font)
-    sub_text_ui = widgets.Label(value=sub_text)
-    ok_ui = widgets.Button(text="Close")
-    container.append(text_ui)
-    container.append(sub_text_ui)
-    container.append(ok_ui)
-    ok_ui.clicked.connect(container.close)
-
-    container.native.setWindowTitle("CLABE")
-    with magicgui.event_loop():
-        container.show()
diff --git a/src/aind_behavior_experiment_launcher/launcher/behavior_launcher.py b/src/aind_behavior_experiment_launcher/launcher/behavior_launcher.py
index d29a1f83..be972985 100644
--- a/src/aind_behavior_experiment_launcher/launcher/behavior_launcher.py
+++ b/src/aind_behavior_experiment_launcher/launcher/behavior_launcher.py
@@ -521,7 +521,7 @@ def pick_rig(self) -> TRig:
         else:
             while True:
                 try:
-                    path = self.prompt_pick_file_from_list(available_rigs, prompt="Choose a rig:", zero_label=None)
+                    path = self.ui_helper.prompt_pick_from_list(available_rigs, prompt="Choose a rig:")
                     if not isinstance(path, str):
                         raise ValueError("Invalid choice.")
                     rig = model_from_json_file(path, self.launcher.rig_schema_model)
@@ -606,7 +606,7 @@ def pick_task_logic(self) -> TTaskLogic:
                 available_files = glob.glob(os.path.join(_path, "*.json"))
                 if len(available_files) == 0:
                     break
-                path = self.prompt_pick_file_from_list(available_files, prompt="Choose a task logic:", zero_label=None)
+                path = self.ui_helper.prompt_pick_from_list(available_files, prompt="Choose a task logic:")
                 if not isinstance(path, str):
                     raise ValueError("Invalid choice.")
                 if not os.path.isfile(path):
@@ -622,51 +622,6 @@ def pick_task_logic(self) -> TTaskLogic:
             raise ValueError("No task logic file found.")
         return task_logic
 
-    def prompt_pick_file_from_list(
-        self,
-        available_files: list[str],
-        prompt: str = "Choose a file:",
-        zero_label: Optional[str] = None,
-        zero_value: Optional[_T] = None,
-        zero_as_input: bool = True,
-        zero_as_input_label: str = "Enter manually",
-    ) -> Optional[str | _T]:
-        """
-        Prompts the user to pick a file from a list of available files.
-
-        Args:
-            available_files (list[str]): List of file paths to choose from.
-            prompt (str): The prompt message to display.
-            zero_label (Optional[str]): Label for the "zero" option.
-            zero_value (Optional[_T]): Value to return for the "zero" option.
-            zero_as_input (bool): Whether to allow manual input for the "zero" option.
-            zero_as_input_label (str): Label for manual input prompt.
-
-        Returns:
-            Optional[str | _T]: The selected file path or the zero value.
-
-        Raises:
-            ValueError: If an invalid choice is made.
-        """
-        self.ui_helper.print(prompt)
-        if zero_label is not None:
-            self.ui_helper.print(f"0: {zero_label}")
-        for i, file in enumerate(available_files):
-            self.ui_helper.print(f"{i + 1}: {os.path.split(file)[1]}")
-        choice = int(input("Choice: "))
-        if choice < 0 or choice >= len(available_files) + 1:
-            raise ValueError
-        if choice == 0:
-            if zero_label is None:
-                raise ValueError
-            else:
-                if zero_as_input:
-                    return str(input(zero_as_input_label))
-                else:
-                    return zero_value
-        else:
-            return available_files[choice - 1]
-
     def choose_subject(self, directory: str | os.PathLike) -> str:
         """
         Prompts the user to select or manually enter a subject name.
diff --git a/src/aind_behavior_experiment_launcher/_magicgui.py b/src/aind_behavior_experiment_launcher/ui/_magicgui.py
similarity index 100%
rename from src/aind_behavior_experiment_launcher/_magicgui.py
rename to src/aind_behavior_experiment_launcher/ui/_magicgui.py
diff --git a/src/aind_behavior_experiment_launcher/ui/gui_helper.py b/src/aind_behavior_experiment_launcher/ui/gui_helper.py
new file mode 100644
index 00000000..454048b6
--- /dev/null
+++ b/src/aind_behavior_experiment_launcher/ui/gui_helper.py
@@ -0,0 +1,127 @@
+import logging
+from typing import List, Optional, TypeVar
+
+import magicgui
+import magicgui.types
+from magicgui import widgets as widgets
+from qtpy.QtCore import Qt
+from typing_extensions import override
+
+from aind_behavior_experiment_launcher.ui import UiHelper
+
+logger = logging.getLogger(__name__)
+
+T = TypeVar("T")
+
+
+class GuiHelper(UiHelper):
+    def prompt_pick_from_list(
+        self, value: List[str], prompt: str, allow_0_as_none: bool = True, **kwargs
+    ) -> Optional[str]:
+        container: widgets.Container = widgets.Container(layout="vertical")
+
+        # Add button to submit
+        submit_button = widgets.Button(text="Submit")
+        submit_button.changed.connect(container.close)
+        container.append(submit_button)
+
+        # Make the picker
+        files = widgets.ComboBox(
+            value=None if allow_0_as_none else value[0],
+            choices=[None] + value if allow_0_as_none else value,
+            label=prompt,
+        )
+        container.append(files)
+        file_picker = widgets.FileEdit(
+            mode=magicgui.types.FileDialogMode.EXISTING_FILE,
+            label="Or provide a file path:",
+        )
+        container.append(file_picker)
+
+        container.native.setWindowTitle(prompt)
+        with magicgui.event_loop():
+            container.show()
+
+        return files.get_value()
+
+    @override
+    def prompt_yes_no_question(self, prompt: str) -> bool:
+        _container_outer: widgets.Container = widgets.Container(layout="vertical")
+        _container_inner: widgets.Container = widgets.Container(layout="horizontal")
+        _p = widgets.Label(value=prompt)
+
+        _w_yes = widgets.Button(value=True, text="Yes")
+        _w_no = widgets.Button(value=False, text="No")
+
+        _result: List[Optional[bool]] = [None]
+        _w_yes.changed.connect(lambda _: _result.__setitem__(0, True))
+        _w_no.changed.connect(lambda _: _result.__setitem__(0, False))
+
+        _w_yes.changed.connect(_container_outer.close)
+        _w_no.changed.connect(_container_outer.close)
+
+        _container_inner.append(_w_yes)
+        _container_inner.append(_w_no)
+        _container_outer.append(_p)
+        _container_outer.append(_container_inner)
+
+        _container_outer.native.setWindowTitle(prompt)
+        with magicgui.event_loop():
+            _container_outer.show()
+
+        if _result[0] is None:
+            return False
+
+        return _result[0]
+
+    def prompt_text(self, prompt: str) -> str:
+        container: widgets.Container = widgets.Container(layout="vertical")
+
+        # Add button to submit
+        submit_button = widgets.Button(text="Submit")
+        submit_button.changed.connect(container.close)
+        container.append(submit_button)
+
+        # Make the picker
+        notes_ui = widgets.TextEdit()
+        container.append(notes_ui)
+        container.native.setWindowTitle(f"{prompt}")
+
+        with magicgui.event_loop():
+            container.show()
+
+        return notes_ui.get_value()
+
+
+def make_header() -> None:
+    _HEADER = """\n
+     ██████╗██╗      █████╗ ██████╗ ███████╗
+    ██╔════╝██║     ██╔══██╗██╔══██╗██╔════╝
+    ██║     ██║     ███████║██████╔╝█████╗
+    ██║     ██║     ██╔══██║██╔══██╗██╔══╝
+    ╚██████╗███████╗██║  ██║██████╔╝███████╗
+     ╚═════╝╚══════╝╚═╝  ╚═╝╚═════╝ ╚══════╝
+    """
+
+    sub_text = """
+    Command-line-interface Launcher for AIND Behavior Experiments
+    Press Control+C to exit at any time.
+    """
+
+    container = widgets.Container()
+    text_ui = widgets.Label(value=_HEADER)
+    text_ui.native.setTextFormat(Qt.TextFormat.MarkdownText)
+    font = text_ui.native.font()
+    font.setPointSize(15)
+    font.setFamily("Courier New")
+    text_ui.native.setFont(font)
+    sub_text_ui = widgets.Label(value=sub_text)
+    ok_ui = widgets.Button(text="Close")
+    container.append(text_ui)
+    container.append(sub_text_ui)
+    container.append(ok_ui)
+    ok_ui.clicked.connect(container.close)
+
+    container.native.setWindowTitle("CLABE")
+    with magicgui.event_loop():
+        container.show()
diff --git a/tests/test_ui.py b/tests/test_ui.py
index 9d0ce74c..0bde7f94 100644
--- a/tests/test_ui.py
+++ b/tests/test_ui.py
@@ -34,18 +34,6 @@ def setUp(self):
         )
         self.picker = self.launcher.picker
 
-    @patch("builtins.input", side_effect=["1"])
-    def test_prompt_pick_file_from_list(self, mock_input):
-        files = ["file1.txt", "file2.txt"]
-        result = self.picker.prompt_pick_file_from_list(files)
-        self.assertEqual(result, "file1.txt")
-
-    @patch("builtins.input", side_effect=["0", "manual_entry"])
-    def test_prompt_pick_file_from_list_manual_entry(self, mock_input):
-        files = ["file1.txt", "file2.txt"]
-        result = self.picker.prompt_pick_file_from_list(files, zero_label="Manual Entry", zero_as_input=True)
-        self.assertEqual(result, "manual_entry")
-
     @patch("os.path.isdir", return_value=True)
     @patch("os.listdir", return_value=["subjects/subject1", "subjects/subject2"])
     @patch("builtins.input", side_effect=["1"])

From 145d71f6f57f449a9f074e41d32acacd7f2e8f54 Mon Sep 17 00:00:00 2001
From: bruno-f-cruz <7049351+bruno-f-cruz@users.noreply.github.com>
Date: Sun, 16 Mar 2025 17:37:08 -0700
Subject: [PATCH 16/16] Remove reference to gui from example

---
 examples/behavior_launcher.py | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/examples/behavior_launcher.py b/examples/behavior_launcher.py
index 890e73a4..debb2da6 100644
--- a/examples/behavior_launcher.py
+++ b/examples/behavior_launcher.py
@@ -17,7 +17,6 @@
     BehaviorServicesFactoryManager,
     DefaultBehaviorPicker,
 )
-from aind_behavior_experiment_launcher.ui import gui_helper
 
 logger = logging.getLogger(__name__)
 
@@ -105,7 +104,7 @@ def make_launcher():
         session_schema_model=AindBehaviorSessionModel,
         task_logic_schema_model=TaskLogicModel,
         data_dir=data_dir,
-        picker=DefaultBehaviorPicker(config_library_dir=Path(LIB_CONFIG), ui_helper=gui_helper.GuiHelper()),
+        picker=DefaultBehaviorPicker(config_library_dir=Path(LIB_CONFIG)),
         temp_dir=Path(r"./local/.temp"),
         allow_dirty=True,
         skip_hardware_validation=True,