CheckAMG/pyproject.toml at main · AnantharamanLab/CheckAMG · GitHub

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[build-system]
requires = ["setuptools>=61.0"]
build-backend = "setuptools.build_meta"

[project]
name = "checkamg"
version = "0.10.0"
description = "Automated discovery and curation of Auxiliary Metabolic Genes (AMGs), Auxiliary Regulatory Genes (AReGs), and Auxiliary Physiology Genes (APGs) encoded by viral genomes."
readme = {file = "README-pypi.md", content-type = "text/markdown"}
requires-python = ">=3.11, <3.13"
authors = [
  {name = "James C. Kosmopoulos", email = "kosmopoulos@wisc.edu"}
]
license = {text = "GPL-3.0-or-later"}
keywords = ["bioinformatics", "metagenomics", "viromics", "genomics", "AMG", "phage"]
classifiers = [
  "Programming Language :: Python :: 3",
  "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)",
  "Operating System :: POSIX :: Linux",
  "Operating System :: MacOS",
  "Topic :: Scientific/Engineering :: Bio-Informatics"
]
dependencies = [
  "joblib>=1.5.1",
  "lightgbm>=4.5.0",
  "metapyrodigal>=1.4.1",
  "numba>=0.61.2",
  "numpy>=1.24, <2.3",
  "pandas>=2.3.0",
  "polars-u64-idx>=1.30.0",
  "psutil>=7.0.0",
  "pyarrow>=20.0.0",
  "pyfastatools==2.5.0",
  "pyhmmer==0.11.1",
  "pyrodigal>=3.5.2",
  "pyrodigal-gv>=0.3.2",
  "pyyaml>=6.0",
  "requests>=2.32",
  "scikit-learn==1.7.2",
  "snakemake==8.23.2",
  "tqdm>=4.67.1"
]

[project.urls]
"Homepage" = "https://github.com/AnantharamanLab/CheckAMG"

[project.scripts]
checkamg = "CheckAMG.__main__:main"

[tool.setuptools]
include-package-data = true

[tool.setuptools.packages.find]
where = ["."]
include = ["CheckAMG", "CheckAMG.scripts"]

[tool.setuptools.package-data]
"CheckAMG" = ["files/**/*"]
"CheckAMG.scripts" = ["*.smk"]