Skip to content

error in Viwrap set_up_env and download #65

@weipengLLL

Description

@weipengLLL

(/ifs1/User/ViWrap/env/ViWrap) liuweipeng 22:55:40 ~/ViWrap
$ ViWrap set_up_env --conda_env_dir /ifs1/User/ViWrap/env

​### Set up conda env ###

[2025-08-17 22:56:11] | Looks like the input parameter is correct
[2025-08-17 22:56:12] | ViWrap-VIBRANT conda env path is not present!
[2025-08-17 22:56:13] | ViWrap-geNomad conda env path is not present!
[2025-08-17 22:56:13] | ViWrap-vRhyme conda env path is not present!
mv: cannot move 'cluster_one-1.0.jar' to '/ifs1/User/liuweipeng/ViWrap/env/ViWrap-vContact2/bin': No such file or directory
[2025-08-17 22:56:26] | ViWrap-vContact2 conda env path is not present!
[2025-08-17 22:56:26] | ViWrap-CheckV conda env path is not present!
[2025-08-17 22:56:27] | ViWrap-dRep conda env path is not present!
[2025-08-17 22:56:28] | ViWrap-Tax conda env path is not present!
[2025-08-17 22:56:28] | ViWrap-iPHoP conda env path is not present!
[2025-08-17 22:56:29] | ViWrap-GTDBTk conda env path is not present!
[2025-08-17 22:56:30] | ViWrap-vs2 conda env path is not present!
[2025-08-17 22:56:30] | ViWrap-Mapping conda env path is not present!
[2025-08-17 22:56:31] | ViWrap-DVF conda env path is not present!
The total running time is 0:00:20 (in "hr:min:sec" format)

(/ifs1/User/liuweipeng/ViWrap/env/ViWrap) liuweipeng 22:47:08 ~/ViWrap
$ ViWrap download --db_dir /ifs1/User/liuweipeng/ViWrap/VW_db --conda_env_dir /ifs1/User/liuweipeng/ViWrap/env

Welcome to ViWrap

The db dir of /ifs1/User/liuweipeng/ViWrap/VW_db has also ready been set up

After downloading and granting permissions as per the instructions, the main environment was set up successfully. However, when starting to call Viwrap for sub-environment setup and database download, the command only runs for about ten seconds before ending, displaying as above. Requesting assistance. Thanks

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions