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Update ACEMID_data_uploader.md
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content/docs/Facilities/Data Capture and Movement/ACEMID_data_uploader.md

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@@ -41,12 +41,12 @@ sudo apt install csvkit pdftotext inotify-tools
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(5) Dockerfile The Dockerfile used to build the docker image of the above bash scripts to run on different platforms.
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5. **Setup Instructions**
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(1) Clone the Repository
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1. **Clone the Repository**
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```
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git clone https://github.com/Australian-Imaging-Service/acemid-uploader.git
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cd acemid-uploader
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```
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(2) Configure Environment Variables
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2. **Configure Environment Variables**
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Export the following variables in your shell:
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```
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export XNAT_URL="your_xnat_url"
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export PROJECT_ID="your_xnat_project_id"
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```
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You can also modify the script directly to hardcode these values if preferred.
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(3) Running the script
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3. **Running the script**
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- For ACEMID_uploader.sh script, place this script in the folder of the cleaned export data file folder containing .db files and then run ./ACEMID_uploader.sh
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- For dermoscopy_data_upload.sh script, place this script in the dermoscopy data file folder containing .csv files and then run ./dermoscopy_data_upload.sh input_csv_file_name
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- For remove_phi_report.sh script, place this script in the folder containing the pdf files you want to process and then run ./remove_phi_report.sh

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