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example-Snakemake_Pipeline

Pipeline should from start to finish cover most of what a user needs to build their pipeline

Minimum requirements:

  • Should download a file from HTTP
  • Should download a file from GS storage (snakemake 7.32.4)
  • Should use multiple wildcards
  • Should run a python script
  • Should run an R script
  • Should run a bash script
  • Should define resources
  • Should use a conda environment (with a post script)
  • Should use a docker container

DAG

DAG

Rulegraph

Rulegraph

Filegraph

Filegraph