limit cpu usage

Author: trvinh

greedyFAS/annoFAS/annoFAS.py

@@ -58,7 +58,7 @@ def runAnnoFas(args):
     annoOut = []
     if annoModules.checkFileEmpty(outFile) == True or force:
         if extract == '':
-            print('Doing annotation for %s...' % seqFile)
+            print(f'Doing annotation for {seqFile} using {cpus} CPUs...' % )
             annoJobs = annoModules.createAnnoJobs([outName, outPath, seqFile, toolPath,
                                                    annoModules.getAnnoTools(annoToolFile, toolPath), eFlps, signalpOrg,
                                                    eFeature, eInstance, hmmCores, pid])
@@ -207,6 +207,8 @@ def main():
     cpus = args.cpus
     if cpus == 0:
         cpus = mp.cpu_count()-1
+    if cpus > mp.cpu_count():
+        cpus = mp.cpu_count() - 1
 
     # option for saving json file
     outPath = os.path.abspath(args.outPath)

setup.py

@@ -28,7 +28,7 @@
 
 setup(
     name='greedyFAS',
-    version='1.18.19',
+    version='1.18.20',
     python_requires='>=3.12.0',
     description='A tool to compare protein feature architectures',
     long_description=long_description,