Issues with death_rate_trigger.c

[nichole-carlson]

In death rate trigger there is a parameter call parms_cox that is a common_parms function.

We will need to check if this is being used correctly because this is the structure of things that are common across subjects and I don't know why we would change the name of it inside the function compared to earlier uses. We should be consistent inside the function I suspect. In other places it is called parms and I suspect the input is correct.

But this way of coding makes it look like we are using some other version of the Common_parms structure where we are really just using different parts of the structure.

[nichole-carlson]

Fix the *.h file

[nichole-carlson]

Also, what is different about this function compared to the death_rate in pop model is that the birth rate differs and the priors on the times differs. So this could be viewed as a death rate calculation when the prior on the locations is a strauss process. This is probably the same code as from your thesis work??

[nichole-carlson]

Actually that is not true about same code from your thesis work. This is because the response pulse locations exist in the death rate because they are part of the posterior distribution of the locations.