Library needed :
- numpy
- scipy
- biopython
- keras
- h5py
Program needed:
- Blast+
Folder:
- data : with the training set (fasta file)
- db : with a NR-DataBase
- dbCoil : with a NR-DataBase filtred
- profile : to save all profiles
- temp : for temp file
- model : to save the weights of the different models
- table : contains results
You need to be in the BioInformatics-Project folder and then execute this command :
- python3 script/psiBlast.py
- python3 script/main.py