beyond-pairwise/setup.py at main · Biodyn-AI/beyond-pairwise · GitHub

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from setuptools import setup, find_packages

setup(
    name="circuit-structure",
    version="0.1.0",
    description=(
        "Beyond pairwise edges: cell-state conditionality, temporal "
        "directionality, and higher-order circuit structure in "
        "foundation-model gene regulatory networks"
    ),
    author="Ihor Kendiukhov",
    author_email="kenduhov.ig@gmail.com",
    url="https://github.com/Biodyn-AI/circuit-structure",
    license="MIT",
    packages=find_packages(where="src"),
    package_dir={"": "src"},
    python_requires=">=3.9",
    install_requires=[
        "numpy>=1.23.0",
        "pandas>=1.5.0",
        "scipy>=1.9.0",
        "scikit-learn>=1.1.0",
        "scanpy>=1.9.0",
        "anndata>=0.8.0",
        "networkx>=2.8.0",
        "igraph>=0.10.0",
        "matplotlib>=3.6.0",
        "seaborn>=0.12.0",
        "statsmodels>=0.13.0",
        "tqdm>=4.64.0",
    ],
)