Error

[owenr34]

Hello!

I am running into an issue running this on my particular data set, the program runs fine on the test data.

NXF_VER=22.10.0 nextflow run sRNACharP.nf --org= "M.Buryatense5GB1c" --dir="/working directory" --genome="5GB1c_sequence_20220411.fasta" --sRNAs="sRNAs_updated.bed" --genomeAnnotation="proteincoding829.bed" --promoterFile="genome_predictions.csv"

The error I get is:
Command error:
/home/sRNACharP/work/ed/884b641e583976959069aef16f9ae7
Traceback (most recent call last):
File ".command.sh", line 29, in
featureTable[colLable] = colValues_zeros
File "/usr/lib/python3/dist-packages/pandas/core/frame.py", line 3487, in setitem
self._set_item(key, value)
File "/usr/lib/python3/dist-packages/pandas/core/frame.py", line 3564, in _set_item
value = self._sanitize_column(key, value)
File "/usr/lib/python3/dist-packages/pandas/core/frame.py", line 3749, in _sanitize_column
value = sanitize_index(value, self.index, copy=False)
File "/usr/lib/python3/dist-packages/pandas/core/internals/construction.py", line 612, in sanitize_index
raise ValueError("Length of values does not match length of index")
ValueError: Length of values does not match length of index
Work dir:

I have attached the input files.
Archive.zip

I cant seem to find the issues with the input files I provided but some help would be greatly appreciated.

thanks