bump to 2.0 version

Author: warrenlr

README.md

@@ -1,5 +1,5 @@
 [![Release](https://img.shields.io/github/release/bcgsc/unikseq.svg)](https://github.com/bcgsc/unikseq/releases)
-[![Downloads](https://img.shields.io/github/downloads/bcgsc/unikseq/total?logo=github)](https://github.com/bcgsc/unikseq/releases/download/v1.0.0/unikseq-1.0.0.tar.gz)
+[![Downloads](https://img.shields.io/github/downloads/bcgsc/unikseq/total?logo=github)](https://github.com/bcgsc/unikseq/releases/download/v2.0.0/unikseq-2.0.0.tar.gz)
 [![Conda](https://img.shields.io/conda/dn/bioconda/unikseq?label=Conda)](https://anaconda.org/bioconda/unikseq)
 [![Issues](https://img.shields.io/github/issues/bcgsc/unikseq.svg)](https://github.com/bcgsc/unikseq/issues)
 [![link](https://img.shields.io/badge/unikseq-manuscript-brightgreen)](https://doi.org/10.1002/edn3.438)

tools/unikseq-Bloom.pl

@@ -15,7 +15,7 @@
 # We hope this code is useful to you -- Please send comments & suggestions to rwarren * bcgsc.ca
 
 #LICENSE
-# unikseq Copyright (c) 2020-2024 British Columbia Cancer Agency Branch. All rights reserved.
+# unikseq Copyright (c) 2020-present British Columbia Cancer Agency Branch. All rights reserved.
 # unikseq is released under the GNU General Public License v3
 # This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, version 3.
 # For commercial licensing options, please contact Patrick Rebstein prebstein@bccancer.bc.ca
@@ -31,7 +31,7 @@
 use vars qw($opt_k $opt_r $opt_i $opt_o $opt_s $opt_p $opt_l $opt_u $opt_m $opt_c $opt_t $opt_v);
 getopts('k:r:i:o:p:l:u:s:m:c:t:v:');
 
-my $version = "v1.3.5";
+my $version = "v2.0.0";
 my ($k, $regsz, $prop, $minnotunique, $minpercentunique,$maxpercentoutgroup,$cflag,$tsvflag) = (25,100,0,0,90,0,0,0);
 
 if(! $opt_r || ! $opt_i || ! $opt_o){

tools/writeBloom.pl

@@ -16,8 +16,8 @@
 #   If you use LINKS, unikseq, the LINKS/unikseq code or ideas, please cite our work
 
 #LICENSE
-#   LINKS Copyright (c) 2014-2023 Canada's Michael Smith Genome Science Centre.  All rights reserved.
-#   Unikseq Copyright (c) 2020-2023 Canada's Michael Smith Genome Science Centre.  All rights reserved.
+#   LINKS Copyright (c) 2014-present Canada's Michael Smith Genome Science Centre.  All rights reserved.
+#   Unikseq Copyright (c) 2020-present Canada's Michael Smith Genome Science Centre.  All rights reserved.
 #   Unikseq is released under the GNU General Public License v3
 #   This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, version 3.
 #   For commercial licensing options, please contact Patrick Rebstein prebstein@bccancer.bc.ca

unikseq.pl

@@ -15,7 +15,7 @@
 # We hope this code is useful to you -- Please send comments & suggestions to rwarren * bcgsc.ca
 
 #LICENSE
-# unikseq Copyright (c) 2020-2024 British Columbia Cancer Agency Branch. All rights reserved.
+# unikseq Copyright (c) 2020-present British Columbia Cancer Agency Branch. All rights reserved.
 # unikseq is released under the GNU General Public License v3
 
 use strict;
@@ -24,7 +24,7 @@
 use vars qw($opt_k $opt_r $opt_i $opt_o $opt_s $opt_p $opt_l $opt_u $opt_m $opt_c $opt_t $opt_v);
 getopts('k:r:i:o:p:l:u:s:m:c:t:v:');
 
-my $version = "v1.3.5";
+my $version = "v2.0.0";
 my ($k, $regsz, $prop, $minnotunique, $minpercentunique,$maxpercentoutgroup,$cflag,$tsvflag) = (25,100,0,0,90,0,0,0);
 
 if(! $opt_r || ! $opt_i || ! $opt_o){