microbiome2function/.github/workflows/build.yml at main · BonhamLab/microbiome2function · GitHub

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name: Build

on:
  push:
    tags:
      - "v*"
  workflow_dispatch:

permissions:
  contents: read

jobs:
  tests:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.11", "3.12"]

    steps:
      - name: Checkout repository
        uses: actions/checkout@v4
        with:
          fetch-depth: 0

      - name: Ensure tag commit is on main branch
        if: startsWith(github.ref, 'refs/tags/v')
        run: |
          git fetch --depth=1 origin main
          git merge-base --is-ancestor "$GITHUB_SHA" origin/main

      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
          cache: pip
          cache-dependency-path: |
            pyproject.toml
            requirements.txt

      - name: Install project
        run: |
          python -m pip install --upgrade pip
          python -m pip install -e .

      - name: Run tests
        run: python -m unittest discover -s tests -p "test_*.py"

  build:
    needs: tests
    runs-on: ubuntu-latest
    permissions:
      contents: write

    steps:
      - name: Checkout repository
        uses: actions/checkout@v4

      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: "3.12"
          cache: pip
          cache-dependency-path: |
            pyproject.toml
            requirements.txt

      - name: Install build backend
        run: |
          python -m pip install --upgrade pip
          python -m pip install build twine

      - name: Build distributions
        run: python -m build

      - name: Verify distributions
        run: python -m twine check dist/*

      - name: Upload build artifacts
        uses: actions/upload-artifact@v4
        with:
          name: microbiome2function-dist-${{ github.sha }}
          path: dist/*
          if-no-files-found: error

      - name: Upload assets to GitHub release
        if: startsWith(github.ref, 'refs/tags/v')
        env:
          GH_TOKEN: ${{ github.token }}
        run: |
          TAG="${GITHUB_REF_NAME}"
          if gh release view "$TAG" >/dev/null 2>&1; then
            gh release upload "$TAG" dist/* --clobber
          else
            gh release create "$TAG" dist/* --generate-notes --title "$TAG"
          fi