microbiome2function/.gitignore at main · BonhamLab/microbiome2function · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
# Ignore everything by default; selectively include tracked project files.
*

# Repo-level files
!.gitignore
!README.md
!requirements.txt
!docs.md
!FINAL_TODO_LIST.md
!pyproject.toml

# Static assets
!assets/
!assets/*

# Source package (new layout)
!src/
!src/M2F/
!src/M2F/*.py
!src/M2F/dependencies/
!src/M2F/dependencies/*

# Active model notebooks/code (new layout)
!model_notebooks/
!model_notebooks/PROT*/
!model_notebooks/PROT*/*.py
!model_notebooks/PROT*/*.ipynb

# Code examples (if present)
!code_examples/
!code_examples/data_mining/
!code_examples/data_mining/*.py
!code_examples/data_mining/*.ipynb
!code_examples/data_mining/*.sh

# Legacy examples
!legacy_code_examples/
!legacy_code_examples/data_mining/
!legacy_code_examples/data_mining/*.py
!legacy_code_examples/data_mining/*.ipynb
!legacy_code_examples/data_mining/*.sh

# Tests
!tests/
!tests/*.py

# GitHub workflows
!.github/
!.github/workflows/
!.github/workflows/*.yml