From 268dc60f5a18ae5d69a59440310a042627c16b71 Mon Sep 17 00:00:00 2001
From: "openai-code-agent[bot]" <242516109+Codex@users.noreply.github.com>
Date: Thu, 30 Apr 2026 08:52:18 +0000
Subject: [PATCH 1/4] Initial plan


From 5fe427f1ad892ce89bb4e788f8b081a819b9e7c3 Mon Sep 17 00:00:00 2001
From: "openai-code-agent[bot]" <242516109+Codex@users.noreply.github.com>
Date: Thu, 30 Apr 2026 08:55:40 +0000
Subject: [PATCH 2/4] Align AGI prompt docs with no-hidden-CoT guidance

Co-authored-by: Bryan-Roe <74067792+Bryan-Roe@users.noreply.github.com>
---
 .github/COPILOT_SETUP_GUIDE.md  |  2 +-
 .github/copilot-instructions.md | 14 +++++++-------
 .gitignore                      |  3 ++-
 3 files changed, 10 insertions(+), 9 deletions(-)

diff --git a/.github/COPILOT_SETUP_GUIDE.md b/.github/COPILOT_SETUP_GUIDE.md
index 26f023a2e..0991d02ed 100644
--- a/.github/COPILOT_SETUP_GUIDE.md
+++ b/.github/COPILOT_SETUP_GUIDE.md
@@ -382,7 +382,7 @@ Aria includes **20+ specialized prompts** in `.github/prompts/` that guide Copil
 
 | Prompt | Purpose |
 |--------|---------|
-| `agi.prompt.md` | Chain-of-thought AGI reasoning |
+| `agi.prompt.md` | AGI reasoning (structured analysis; do not expose hidden chain-of-thought) |
 | `debug.prompt.md` | Systematic debugging protocol |
 | `reason.prompt.md` | Structured analysis & planning |
 | `review.prompt.md` | Security, performance, correctness review |
diff --git a/.github/copilot-instructions.md b/.github/copilot-instructions.md
index 2276ec1cd..c7c34a2c2 100644
--- a/.github/copilot-instructions.md
+++ b/.github/copilot-instructions.md
@@ -329,13 +329,13 @@ Available agents in `.github/agents/`:
 - `Azure_function_codegen_and_deployment.agent.md` — Enterprise Azure Functions workflow with IaC
 - `Azure_Static_Web_App.agent.md` — Static web app deployment patterns
 
-**Prompts** (`.github/prompts/`):
-- `agi.prompt.md` — AGI reasoning with chain-of-thought
-- `reason.prompt.md` — Structured analysis
-- `debug.prompt.md` — Systematic diagnostic protocol
-- `review.prompt.md` — Code review (correctness, security, performance)
-- `aria-command.prompt.md` — Natural language → Aria actions
-- `train.prompt.md` — Training execution with safety
+**Prompts** (`.github/prompts/`):
+- `agi.prompt.md` — AGI reasoning (structured analysis; do not expose hidden chain-of-thought)
+- `reason.prompt.md` — Structured analysis
+- `debug.prompt.md` — Systematic diagnostic protocol
+- `review.prompt.md` — Code review (correctness, security, performance)
+- `aria-command.prompt.md` — Natural language → Aria actions
+- `train.prompt.md` — Training execution with safety
 - `quantum.prompt.md` — Cost-aware quantum workflows
 - `chat.prompt.md` — Multi-provider chat with memory
 - `generate-tool.prompt.md` — Safe Python tool generation
diff --git a/.gitignore b/.gitignore
index c562f91e1..a5bb0e30d 100644
--- a/.gitignore
+++ b/.gitignore
@@ -22,7 +22,8 @@ sdist/
 var/
 wheels/
 # Data output directories (generated artifacts)
-data_out/
+data_out/
+ai-projects/chat-cli/logs/
 deployed_models/
 pip-wheel-metadata/
 share/python-wheels/

From 227dde84c452895386d068881541b151f72a6e6a Mon Sep 17 00:00:00 2001
From: Bryan <74067792+Bryan-Roe@users.noreply.github.com>
Date: Thu, 30 Apr 2026 02:28:32 -0700
Subject: [PATCH 3/4] Update copilot-instructions.md

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
---
 .github/copilot-instructions.md | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

diff --git a/.github/copilot-instructions.md b/.github/copilot-instructions.md
index c7c34a2c2..dac61f7c9 100644
--- a/.github/copilot-instructions.md
+++ b/.github/copilot-instructions.md
@@ -329,13 +329,13 @@ Available agents in `.github/agents/`:
 - `Azure_function_codegen_and_deployment.agent.md` — Enterprise Azure Functions workflow with IaC
 - `Azure_Static_Web_App.agent.md` — Static web app deployment patterns
 
-**Prompts** (`.github/prompts/`):
-- `agi.prompt.md` — AGI reasoning (structured analysis; do not expose hidden chain-of-thought)
-- `reason.prompt.md` — Structured analysis
-- `debug.prompt.md` — Systematic diagnostic protocol
-- `review.prompt.md` — Code review (correctness, security, performance)
-- `aria-command.prompt.md` — Natural language → Aria actions
-- `train.prompt.md` — Training execution with safety
+**Prompts** (`.github/prompts/`):
+- `agi.prompt.md` — AGI reasoning with structured analysis
+- `reason.prompt.md` — Structured analysis
+- `debug.prompt.md` — Systematic diagnostic protocol
+- `review.prompt.md` — Code review (correctness, security, performance)
+- `aria-command.prompt.md` — Natural language → Aria actions
+- `train.prompt.md` — Training execution with safety
 - `quantum.prompt.md` — Cost-aware quantum workflows
 - `chat.prompt.md` — Multi-provider chat with memory
 - `generate-tool.prompt.md` — Safe Python tool generation

From 0f5547be41e021aef590ce94f12f02d9757551ca Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Wed, 6 May 2026 03:53:54 +0000
Subject: [PATCH 4/4] Fix COPILOT_SETUP_GUIDE.md table entry to match
 agi.prompt.md actual behavior

Agent-Logs-Url: https://github.com/Bryan-Roe/Aria/sessions/786cfd57-76e7-4791-8203-a66a55e32e3c

Co-authored-by: Bryan-Roe <74067792+Bryan-Roe@users.noreply.github.com>
---
 .github/COPILOT_SETUP_GUIDE.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/COPILOT_SETUP_GUIDE.md b/.github/COPILOT_SETUP_GUIDE.md
index 0991d02ed..26f9d0ef0 100644
--- a/.github/COPILOT_SETUP_GUIDE.md
+++ b/.github/COPILOT_SETUP_GUIDE.md
@@ -382,7 +382,7 @@ Aria includes **20+ specialized prompts** in `.github/prompts/` that guide Copil
 
 | Prompt | Purpose |
 |--------|---------|
-| `agi.prompt.md` | AGI reasoning (structured analysis; do not expose hidden chain-of-thought) |
+| `agi.prompt.md` | AGI reasoning with structured analysis |
 | `debug.prompt.md` | Systematic debugging protocol |
 | `reason.prompt.md` | Structured analysis & planning |
 | `review.prompt.md` | Security, performance, correctness review |