diff --git a/.gitignore b/.gitignore index 72364f9..506103a 100644 --- a/.gitignore +++ b/.gitignore @@ -87,3 +87,20 @@ ENV/ # Rope project settings .ropeproject + +# Coverage reports +*.coverage +*.coveragerc + +#Media Folder +pychart/MEDIA/* +!pychart/MEDIA/.gitkeep + +#files +TestBook.ipynb +output.html + +ansible2_PyChart/vars/vars.yml +ansible2_PyChart/hosts + +ansible2_PyChart/playbook2/playbook-pychart.retry diff --git a/README.md b/README.md new file mode 100644 index 0000000..39c713d --- /dev/null +++ b/README.md @@ -0,0 +1,90 @@ +# [PyChart](https://github.com/CCallahanIV/PyChart) +Code Fellows 401 Python Final Project + +## Members: + * Ted Callahan + * Jordan Schatzman + * Colin Lamont + +PyChart is web-based application allowing the user a simple sandbox environment in which to upload or access data through API and render and save representations of that data. + +## User Stories: +(Relative difficulty rankings are included at the end of each story, or as a part of the story in parenthesis.) +User and Dev stories are ranked in order. + +The MVP, INTERMEDIATE, and STRETCH tags below define milestones for our application. Each place represents a potential stopping point were we could present a proof-of-concept. Our MVP goal is to have an application where a user can upload a .csv file, examine the data, and render an chart image. The data and render can saved to a profile. + +To add to that, we would like to offer the user some options to customize the render and data. As time allows, we would like to add more options for customization of data and renders. + + + * As a User... + 1. I want to be able to upload a .csv (2), perform very simple data manipulation (6), and render it into a chart (4). + 2. I want to store my data and renders on my profile. (3) +-- MVP -- + 3. I want some simple customization options on my renders (5). +-- INTERMEDIATE -- + 4. I want to be able to visualize either my data or preexisting data in the form of a scatterplot, histogram or bargraph. (4) + 5. I want to be able to download my saved renders. (1) +-- STRETCH -- + + * As a Developer... + 0. I want to share responsibilities with other devs so we all learn. (1) + 1. I want the app to be built using django. (2) + 2. I want to use a common python library (e.g. bokeh) to manipulate data and render it in a web application. (6) + 3. I want to be have 5 tests written per developer per day. (3) + 4. I want to host this application on AWS. (5) + 5. I want to be able to automate deployments with ansible. (7) + +## Git Workflow: + + * Git Master - One person in the group will control Pull Requests from development to master and control the deployment pipeline. + + * Issue Tracking - Feature Production and issues will be tracked using Waffle. [https://waffle.io/CCallahanIV/PyChart] + + * Deployment Branch: master + - All pull requests to master may only be approved by the Git Master. + + * Staging Branch: development + - All work will be merged into the development branch via pull request. + - Developers may not merge their own PR, all PR's must be reviewed by another dev. + + * Feature Branches: by feature name + - All features should have descriptive names. + + * Hotfix-Branches: -hotfix + - Hotfix branches may be made off of any feature branch or the development branch to quickly fix small issues. + + +#POST PROJECT DEBRIEF: + +## Leftover TODOs: + * Implement CSRF protection on form submissions through AJAX calls. (DONE) + * Move bokeh-related functions into separate module, import into views. + * Expand profile related functionality. + + +## Lessons Learned: + * Plan and design division of tasks between front end and back end prior to writing routes and handlers. + - Django views are great for "static" views. + - Design a RESTful API to serve dynamic requests from front end, from the start. + + * Testing a feature as you write is a good workflow, leads to better-reviewed and better-factored code. + + * Environmental variables are great not only for security, but for establishing publication and development configuration controls. + - These must be well organized across team members. + - How to control a master list outside of version control? + + * Manage migrations in a very deliberate way. Must be appropriately version controlled. + +## Questions Moving Forward: + * How to architect application between front and back end frameworks (e.g. React and Django) + + * How to correctly implement security measures from the start. + - Are there secure design conventions? + - What are best-practices for ensuring security? + + * How to test front end logic (e.g. using Mocha)? + + * Using tools and libraries such as Bootstrap are fine for project week and tight time constraints. Professionally, what are the questions to ask to determine whether or not something should be 3rd party or in-house? + - Compromise feature-set, trimming the fat vs. time, expense + diff --git a/ansible2_PyChart/playbooks/playbook-pychart.yml b/ansible2_PyChart/playbooks/playbook-pychart.yml new file mode 100644 index 0000000..0141e5f --- /dev/null +++ b/ansible2_PyChart/playbooks/playbook-pychart.yml @@ -0,0 +1,113 @@ +--- +- hosts: ec2 + remote_user: ubuntu + become: yes + become_method: sudo + vars_files: + - ~/Documents/CodeFellows/401/pychart/PyChart/ansible2_PyChart/vars/vars.yml + vars: + env: + PYCHART_DB: "{{PYCHART_DB}}" + DB_USERNAME: "{{DB_USERNAME}}" + DB_PASSWORD: "{{DB_PASSWORD}}" + DB_ENDPOINT: "{{DB_ENDPOINT}}" + SECRET_KEY: "{{SECRET_KEY}}" + EMAIL_HOST_PASSWORD: "{{EMAIL_HOST_PASSWORD}}" + ALLOWED_HOSTS: "{{ALLOWED_HOSTS}}" + + tasks: + - name: Update the Ubuntu system and services + apt: update_cache=yes + + - name: Upgrade the Ubuntu system + apt: upgrade=yes + + - name: Install Basic Unix-level Services + apt: name={{ item }} state=latest + with_items: + - nginx + - python3 + - python3-pip + - python3.4-venv + - python-dev + - git + - gunicorn + - libtiff5-dev + - libjpeg8-dev + - zlib1g-dev + - libfreetype6-dev + - liblcms2-dev + - libwebp-dev + - tcl8.6-dev + - tk8.6-dev + - python-tk + - libpq-dev + + - name: Clone the Django Imager App to the Home Directory + become: yes + become_method: sudo + git: clone=yes repo={{project_repo}} dest=/home/ubuntu/PyChart version={{branch}} + + - name: Create a virtual environment in the django app. + command: python3 -m venv /home/ubuntu/PyChart + + - name: Install gunicorn to virtual environment + pip: virtualenv=/home/ubuntu/PyChart name=gunicorn + + - name: Install the packages specified in requirements.pip in the Python 3 environment + pip: + requirements: /home/ubuntu/PyChart/requirements.pip + virtualenv: /home/ubuntu/PyChart + virtualenv_python: python3.4 + + - name: Register the old default file + stat: path=/etc/nginx/sites-available/default.orig + register: default_stat + + - name: Rename old default file + command: mv /etc/nginx/sites-available/default /etc/nginx/sites-available/default.orig + when: not default_stat.stat.exists + + - name: Create a new default file for nginx + template: src=../templates/nginx_config.jinja2 dest=/etc/nginx/sites-available/default + + - name: Copy upstart script into /etc/init/ + template: src=../templates/upstart_config.jinja2 dest=/etc/init/pychart.conf + + - name: Restart nginx service + service: name=nginx state=restarted + + - name: Migrate Django models to database + django_manage: + command: migrate + app_path: /home/ubuntu/PyChart/pychart + virtualenv: /home/ubuntu/PyChart + environment: "{{env}}" + + - name: Collect static files + django_manage: + command: collectstatic + app_path: /home/ubuntu/PyChart/pychart + virtualenv: /home/ubuntu/PyChart + environment: "{{env}}" + + - name: Change permissions on media folder + file: + path: "{{media_root}}" + state: touch + mode: 0777 + + - name: Change permissions on media/data + file: + path: "{{media_root}}/data" + state: touch + mode: 0777 + + - name: Change permissions on media/data + file: + path: "{{media_root}}/../../pychart" + state: touch + mode: 0777 + + - name: Restart the imager upstart job + service: name="pychart" state=restarted \ No newline at end of file diff --git a/ansible2_PyChart/templates/nginx_config.jinja2 b/ansible2_PyChart/templates/nginx_config.jinja2 new file mode 100644 index 0000000..8523287 --- /dev/null +++ b/ansible2_PyChart/templates/nginx_config.jinja2 @@ -0,0 +1,20 @@ +server { + listen 80; + server_name {{ server_name }} + access_log /var/log/nginx/test.log; + + location / { + proxy_pass http://127.0.0.1:8080; + proxy_set_header Host $host; + proxy_set_header X-Real-IP $remote_addr; + proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for; + } + location /static/ { + autoindex on; + alias /home/ubuntu/PyChart/pychart/pychart/static/; + } + location /media/ { + autoindex on; + alias /home/ubuntu/PyChart/pychart/MEDIA/; + } +} \ No newline at end of file diff --git a/ansible2_PyChart/templates/upstart_config.jinja2 b/ansible2_PyChart/templates/upstart_config.jinja2 new file mode 100644 index 0000000..dde06a5 --- /dev/null +++ b/ansible2_PyChart/templates/upstart_config.jinja2 @@ -0,0 +1,19 @@ +description "PyChart" + +start on (filesystem) +stop on runlevel [016] + +respawn +setuid nobody +setgid nogroup +chdir {{install_root}}/{{ app_name }}/pychart + +env PYCHART_DB='{{PYCHART_DB}}' +env DB_USERNAME='{{DB_USERNAME}}' +env DB_PASSWORD='{{DB_PASSWORD}}' +env DB_ENDPOINT='{{DB_ENDPOINT}}' +env SECRET_KEY='{{SECRET_KEY}}' +env EMAIL_HOST_PASSWORD='{{EMAIL_HOST_PASSWORD}}' +env ALLOWED_HOSTS='{{ALLOWED_HOSTS}}' + +exec /home/ubuntu/PyChart/bin/gunicorn -b :8080 pychart.wsgi:application \ No newline at end of file diff --git a/pychart/MEDIA/.gitkeep b/pychart/MEDIA/.gitkeep new file mode 100644 index 0000000..e69de29 diff --git a/pychart/MEDIA/data/boston_housing_data.csv b/pychart/MEDIA/data/boston_housing_data.csv new file mode 100644 index 0000000..ae24ab8 --- /dev/null +++ b/pychart/MEDIA/data/boston_housing_data.csv @@ -0,0 +1,507 @@ +CRIM,ZN,INDUS,CHAS,NOX,RM,AGE,DIS,RAD,TAX,PTRATIO,B,LSTAT,MEDV +0.00632,18.00,2.310,0,0.5380,6.5750,65.20,4.0900,1,296.0,15.30,396.90,4.98,24.00 +0.02731,0.00,7.070,0,0.4690,6.4210,78.90,4.9671,2,242.0,17.80,396.90,9.14,21.60 +0.02729,0.00,7.070,0,0.4690,7.1850,61.10,4.9671,2,242.0,17.80,392.83,4.03,34.70 +0.03237,0.00,2.180,0,0.4580,6.9980,45.80,6.0622,3,222.0,18.70,394.63,2.94,33.40 +0.06905,0.00,2.180,0,0.4580,7.1470,54.20,6.0622,3,222.0,18.70,396.90,5.33,36.20 +0.02985,0.00,2.180,0,0.4580,6.4300,58.70,6.0622,3,222.0,18.70,394.12,5.21,28.70 +0.08829,12.50,7.870,0,0.5240,6.0120,66.60,5.5605,5,311.0,15.20,395.60,12.43,22.90 +0.14455,12.50,7.870,0,0.5240,6.1720,96.10,5.9505,5,311.0,15.20,396.90,19.15,27.10 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+age,n,alcohol-use,alcohol-frequency,marijuana-use,marijuana-frequency,cocaine-use,cocaine-frequency,crack-use,crack-frequency,heroin-use,heroin-frequency,hallucinogen-use,hallucinogen-frequency,inhalant-use,inhalant-frequency,pain-releiver-use,pain-releiver-frequency,oxycontin-use,oxycontin-frequency,tranquilizer-use,tranquilizer-frequency,stimulant-use,stimulant-frequency,meth-use,meth-frequency,sedative-use,sedative-frequency +12,2798,3.9,3.0,1.1,4.0,0.1,5.0,0.0,-,0.1,35.5,0.2,52.0,1.6,19.0,2.0,36.0,0.1,24.5,0.2,52.0,0.2,2.0,0.0,-,0.2,13.0 +13,2757,8.5,6.0,3.4,15.0,0.1,1.0,0.0,3.0,0.0,-,0.6,6.0,2.5,12.0,2.4,14.0,0.1,41.0,0.3,25.5,0.3,4.0,0.1,5.0,0.1,19.0 +14,2792,18.1,5.0,8.7,24.0,0.1,5.5,0.0,-,0.1,2.0,1.6,3.0,2.6,5.0,3.9,12.0,0.4,4.5,0.9,5.0,0.8,12.0,0.1,24.0,0.2,16.5 +15,2956,29.2,6.0,14.5,25.0,0.5,4.0,0.1,9.5,0.2,1.0,2.1,4.0,2.5,5.5,5.5,10.0,0.8,3.0,2.0,4.5,1.5,6.0,0.3,10.5,0.4,30.0 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+
+
+ + + + \ No newline at end of file diff --git a/pychart/manage.py b/pychart/manage.py new file mode 100755 index 0000000..ef04b68 --- /dev/null +++ b/pychart/manage.py @@ -0,0 +1,22 @@ +#!/usr/bin/env python +import os +import sys + +if __name__ == "__main__": + os.environ.setdefault("DJANGO_SETTINGS_MODULE", "pychart.settings") + try: + from django.core.management import execute_from_command_line + except ImportError: + # The above import may fail for some other reason. Ensure that the + # issue is really that Django is missing to avoid masking other + # exceptions on Python 2. + try: + import django + except ImportError: + raise ImportError( + "Couldn't import Django. Are you sure it's installed and " + "available on your PYTHONPATH environment variable? Did you " + "forget to activate a virtual environment?" + ) + raise + execute_from_command_line(sys.argv) diff --git a/pychart/pychart/__init__.py b/pychart/pychart/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/pychart/pychart/settings.py b/pychart/pychart/settings.py new file mode 100644 index 0000000..919e8b3 --- /dev/null +++ b/pychart/pychart/settings.py @@ -0,0 +1,151 @@ +""" +Django settings for pychart project. + +Generated by 'django-admin startproject' using Django 1.10.5. + +For more information on this file, see +https://docs.djangoproject.com/en/1.10/topics/settings/ + +For the full list of settings and their values, see +https://docs.djangoproject.com/en/1.10/ref/settings/ +""" + +import os + +# Build paths inside the project like this: os.path.join(BASE_DIR, ...) +BASE_DIR = os.path.dirname(os.path.dirname(os.path.abspath(__file__))) + + +# Quick-start development settings - unsuitable for production +# See https://docs.djangoproject.com/en/1.10/howto/deployment/checklist/ + +# SECURITY WARNING: keep the secret key used in production secret! +SECRET_KEY = os.environ.get("SECRET_KEY", "") + +# SECURITY WARNING: don't run with debug turned on in production! + +#TODO: Make this an environmental variable. +DEBUG = True + +ALLOWED_HOSTS = os.environ.get("ALLOWED_HOSTS").split() + + +# Application definition + +INSTALLED_APPS = [ + 'django.contrib.admin', + 'django.contrib.auth', + 'django.contrib.contenttypes', + 'django.contrib.sessions', + 'django.contrib.messages', + 'django.contrib.staticfiles', + 'pychart', + 'pychart_profile', + 'pychart_datarender', +] + +MIDDLEWARE = [ + 'django.middleware.security.SecurityMiddleware', + 'django.contrib.sessions.middleware.SessionMiddleware', + 'django.middleware.common.CommonMiddleware', + 'django.middleware.csrf.CsrfViewMiddleware', + 'django.contrib.auth.middleware.AuthenticationMiddleware', + 'django.contrib.messages.middleware.MessageMiddleware', + 'django.middleware.clickjacking.XFrameOptionsMiddleware', +] + +ROOT_URLCONF = 'pychart.urls' + +TEMPLATES = [ + { + 'BACKEND': 'django.template.backends.django.DjangoTemplates', + 'DIRS': [], + 'APP_DIRS': True, + 'OPTIONS': { + 'context_processors': [ + 'django.template.context_processors.debug', + 'django.template.context_processors.request', + 'django.contrib.auth.context_processors.auth', + 'django.contrib.messages.context_processors.messages', + ], + }, + }, +] + +WSGI_APPLICATION = 'pychart.wsgi.application' + + +# Database +# https://docs.djangoproject.com/en/1.10/ref/settings/#databases + +DATABASES = { + 'default': { + 'ENGINE': 'django.db.backends.postgresql', + 'NAME': os.environ.get("PYCHART_DB", "pychart_db"), + 'USER': os.environ.get("DB_USERNAME", ""), + 'PASSWORD': os.environ.get("DB_PASSWORD", ""), + 'HOST': os.environ.get("DB_ENDPOINT", ""), + 'PORT': '5432', + 'TEST': { + 'NAME': os.environ.get("TEST_PYCHART_DB", "test_pychart_db") + } + } +} + + + +# Password validation +# https://docs.djangoproject.com/en/1.10/ref/settings/#auth-password-validators + +AUTH_PASSWORD_VALIDATORS = [ + { + 'NAME': 'django.contrib.auth.password_validation.UserAttributeSimilarityValidator', + }, + { + 'NAME': 'django.contrib.auth.password_validation.MinimumLengthValidator', + }, + { + 'NAME': 'django.contrib.auth.password_validation.CommonPasswordValidator', + }, + { + 'NAME': 'django.contrib.auth.password_validation.NumericPasswordValidator', + }, +] + + +# Internationalization +# https://docs.djangoproject.com/en/1.10/topics/i18n/ + +LANGUAGE_CODE = 'en-us' + +TIME_ZONE = 'America/Los_Angeles' + +USE_I18N = True + +USE_L10N = True + +USE_TZ = True + + +# Static files (CSS, JavaScript, Images) +# https://docs.djangoproject.com/en/1.10/howto/static-files/ + +STATIC_ROOT = os.path.join(BASE_DIR, 'pychart', 'static') +STATIC_URL = '/static/' +MEDIA_ROOT = os.path.join(BASE_DIR, 'MEDIA') +MEDIA_URL = "/media/" + +LOGIN_REDIRECT_URL = 'pychart_profile:profile' + +# 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cookieValue = decodeURIComponent(cookie.substring(name.length + 1)); + break; + } + } + } + return cookieValue; + } + var csrftoken = getCookie('csrftoken'); + + function csrfSafeMethod(method) { + // these HTTP methods do not require CSRF protection + return (/^(GET|HEAD|OPTIONS|TRACE)$/.test(method)); + } + $.ajaxSetup({ + beforeSend: function(xhr, settings) { + if (!csrfSafeMethod(settings.type) && !this.crossDomain) { + xhr.setRequestHeader("X-CSRFToken", csrftoken); + } + } + }); +}); \ No newline at end of file diff --git a/pychart/pychart/static/assets/render_data.js b/pychart/pychart/static/assets/render_data.js new file mode 100644 index 0000000..2a0b1a8 --- /dev/null +++ b/pychart/pychart/static/assets/render_data.js @@ -0,0 +1,39 @@ +$(document).ready(function(){ + //Initial form setup. + $('#Scatter').hide() + $('#Histogram').hide() + $('.renderForm').hide() + + //Helper function for displaying correct chart form. + function display_form(chart_type){ + $('.chartForm').hide() + $('#' + chart_type).show() + }; + + //Event Handler for rendering chart from table data. + $('.renderBtn').on("click", function(event){ + event.preventDefault() + $('.renderForm').show(); + var table_data = $('.table').bootstrapTable('getData'); + var form_data = {}; + $($(this).parent()).serializeArray().map(function(x){form_data[x.name] = x.value;}); + var chart_type = $(this).parent().attr('data'); + form_data["chart_type"] = chart_type; + $.ajax({ + method: 'POST', + url: '/data/retrieve/render/', + data: JSON.stringify({"table_data": table_data, "form_data": form_data}), + contentType: 'application/json', + success: function(result){ + $('.renderContainer').html(result) + sessionStorage.setItem('render_html', result) + } + }); + }); + + //Event handler for displaying correct chart form. + $('#chartType').on("change", function(){ + display_form($(this).val()) + }); + +}); diff --git a/pychart/pychart/static/assets/save_render.js b/pychart/pychart/static/assets/save_render.js new file mode 100644 index 0000000..f7492dc --- /dev/null +++ b/pychart/pychart/static/assets/save_render.js @@ -0,0 +1,24 @@ +$(document).ready(function(){ + + //Event handler for saving rendered chart. + $('#saveBtn').on('click', function(event){ + event.preventDefault() + var render_data = {}; + $('.renderForm').serializeArray().map(function(x){ + render_data[x.name] = x.value; + }); + render_data["html"] = sessionStorage.getItem('render_html') + render_data["render_type"] = $('#chartType').val(); + sessionStorage.removeItem('render_html') + $.ajax({ + method: 'POST', + url: '/data/render/create/', + data: JSON.stringify(render_data), + contentType: 'application/json', + success: function(response){ + //TODO: Better method for redirecting on AJAX success? + window.location.replace(response.url) + } + }); + }); +}); \ No newline at end of file diff --git a/pychart/pychart/static/assets/update_table.js b/pychart/pychart/static/assets/update_table.js new file mode 100644 index 0000000..bc55b69 --- /dev/null +++ b/pychart/pychart/static/assets/update_table.js @@ -0,0 +1,35 @@ +$(document).ready(function(){ + + //Helper function to reset chart form options. + function reset_charts(){ + $('.columnSelect').empty() + $('.nullable').append('