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Ali Nematbakhsh
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remove Will and EGC from Pugh lab
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‎group.html‎

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@@ -23,27 +23,10 @@ <h5 class="mt-0 mb-1">Frank Pugh</h5>
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<img src="./assets/images/Will_Lai.jpeg" alt="william_lai" style="border-radius:20px" height=200 width=150 class="mr-3">
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<h5 class="mt-0 mb-1">William Lai</h5>
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<p class="mt-0 mb-1">Dr. Lai is a Assistant Research Professor in the Department of Molecular Biology and Genetics. He works with the Pugh lab and is interested in principles of gene regulation.</p>
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<p class="mt-0 mb-1"><strong>location:</strong> 458 Biotechnology Building</p>
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<p class="mt-0 mb-1"><strong>email:</strong> wkl29@cornell.edu</p>
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<p class="mt-0 mb-1"><strong>CV:</strong> <a href="/assets/docs/WilliamKMLai_CV.pdf" download><i class="fas fa-file-pdf"></i></a></p>
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<h4>PostDocs</h4>
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<!-- Epigenomics Core Facility -->
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<h4>Epigenomics Core Facility</h4>
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<p>Our goal is to provide a high-throughput end-to-end service that maps protein-DNA interactions genome-wide, tracks metadata, and implements standard data processing and analysis pipelines with a particular focus on human tissue and cell samples and development of diagnostic assays. We intend to establish simplified methods for user-engaged custom data analysis particularly for human epigenomics. <a href="https://www.biotech.cornell.edu/affiliated-programs/epigenomics-core-facility"><i class="fas fa-external-link-alt"></i></a>
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<!-- <img src="/assets/images/CIB_logo_red.png" alt="CIBlogo" height="150"> -->
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<img src="./assets/images/gdk.png" alt="gretta" style="border-radius:20px" height=150 width=150 class="mr-3">
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<h5 class="mt-0 mb-1">Gretta D. Kellogg</h5>
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<p class="mt-0 mb-1">Director</p>
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<p class="mt-0 mb-1">Gretta Kellogg is the new Biotechnology Resource Center (BRC) Epigenomics Facility Director. She has years of experience working as a systems administrator for enterprise systems and then credentialed as an IT Project Manager where her experience was focused on heterogeneous deployments for massive data projects. She found her calling when she transitioned to supporting research initiatives in Higher Education. She has worked as a Program Manager for two Genomic centers at Penn State, developing IT infrastructure to leverage high-performance computing solutions, assisting with obtaining grants funding, and managing multi-million-dollar budgets for complex research initiatives. Most recently she supported faculty initiatives as a Research Computing Facilitator for the Penn State Institute of Computational and Data Sciences. She is honored to help develop a new Epigenomics facility to provide an end-to-end service that implements standard data processing and analysis pipelines</p>
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<small><strong>location:</strong> Biotechnology Building </small>
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<small><strong>email:</strong> gdk44@cornell.edu</small>
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<small><strong>CV:</strong> <a href="/assets/docs/gretta-kellogg_resume-20200727.pdf" download><i class="fas fa-file-pdf"></i></a></small>
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<img src="./assets/images/ali.jpeg" alt="ali" style="border-radius:20px" height=150 width=150 class="mr-3">
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<h5 class="mt-0 mb-1">Ali Nematbakhsh</h5>
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<p class="mt-0 mb-1">Research Associate</p>
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<p class="mt-0 mb-1">Ali Nematbakhsh is an expert in the filed of Computational Biology with extensive experience in high performance computing (HPC). He has started his journey in the field of Computational Biology in 2015 as Postdoctoral Associate at University of Notre Dame by developing a C++ GPU code to study mechanics and proliferation of epithelial cells. Currently he is developing bioinformatic tools and workflows in an open source software, Galaxy, to analyze sequenced data. He also oversees flow of data between Next Generation Sequencer, bioinformatic analysis platform, and the metadata management database.</p>
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<small><strong>location:</strong> Biotechnology Building</small>
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<small><strong>email:</strong> an653@cornell.edu</small>
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<small><strong>portfolio:</strong> <a href="https://sites.google.com/view/alinemat/">https://sites.google.com/view/alinemat/</a></small>
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<img src="./assets/images/pk.jpg" alt="prashant" style="border-radius:20px" height=150 width=150 class="mr-3">
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<h5 class="mt-0 mb-1">Prashant Kuntala</h5>
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<p class="mt-0 mb-1">Computational Scientist</p>
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<p class="mt-0 mb-1"> Prashant designs and develops large scale genomic applications with integrated data visualizations that help researchers better understand gene regulation and protein interactions. He is an expert in bioinformatic tool development, software packaging (conda & pip), Galaxy Administration, CICD and all things web. He received his Master's Degree in Computer Science and a Graduate Certificate in Bioinformatics from Ohio University. Before that he graduated from JNTUH (India) with a B.Tech in Computer Science.
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<small><strong>location:</strong> Biotechnology Building </small>
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<small><strong>netID:</strong> pk544@cornell.edu </small>
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<small><strong>CV:</strong> <a href="/assets/docs/prashantkuntala_cv.pdf" ><i class="fas fa-file-pdf"></i></a></small>
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<img src="./assets/images/danying.jpg" alt="danying" style="border-radius:20px" height=150 width=150 class="mr-3">
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<h5 class="mt-0 mb-1">Danying Shao</h5>
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<p class="mt-0 mb-1">Collaborative Sr. Researcher </p>
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<p class="mt-0 mb-1">Danying holds a Ph.D. in Biophysics from the University of California, San Diego, and a B.S. in Physics from Peking University. She specializes in computational biology, data science, and web applications. She has worked on a wide range of projects, including cell signaling, cell motility, next-generation sequencing pipelines, labor management, and institutional research.</p>
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<small><strong>location:</strong> 214E Computer Building, Advanced Technical Services, Penn State University </small>
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<small><strong>netID:</strong> ds2334@cornell.edu </small>
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<h5 class="mt-0 mb-1">Chuck Pavloski</h5>
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<p class="mt-0 mb-1">Adjunct Senior Collaborative Researcher, HPC Engineer and Architect</p>
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<p class="mt-0 mb-1">Chuck holds a Ph.D. in Meteorology from Penn State University. He has extensive operational scientific field experience and is the former computing director for Penn State meteorology where he architected seven HPC clusters spanning a variety of computationally intense scientific problems. His experience includes the optimization of earth system, meteorological, climate, geophysical modeling and the analysis of ground and satellite based remote sensing. He also has a wide variety of experience designing solutions for scientific workflows spanning a variety of other computationally intensive disciplines.</p>
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<small><strong>location:</strong> 222C Computer Building, Advanced Technical Services, Penn State University </small>
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<small><strong>email:</strong> cfp102@psu.edu </small>
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