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reformat linkouts
Journal, resource, and Pubmed links reformatted to use appropriate icon, link text, and tooltip label.
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‎index.html‎

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@@ -21,7 +21,7 @@ <h3 class="mb-0">PEGR</h3>
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<h3 class="mb-0">YEP</h3>
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<small>Yeast Epigenome Project</small>
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<br>
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<p class="card-text mb-auto">Comprehensive look at the yeast epigenome through the use of ultra-high resolution ChIP-exo. Summary of the work is now <a class="publinks" href="https://dx.doi.org/10.1038/s41586-021-03314-8" title="pubmed link">published in Nature.</a></p>
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<p class="card-text mb-auto">Comprehensive look at the yeast epigenome through the use of ultra-high resolution ChIP-exo. Summary of the work is published in<a class="publinks" href="https://www.nature.com/articles/s41586-021-03314-8" title="journal link">Nature (2021)</a>.</p>
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<a href="/resources#YEP" class="stretched-link"></a>
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‎publications.html‎

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@@ -16,32 +16,32 @@ <h5>Genome-wide promoter assembly in E. coli measured at single-base resolution.
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</small>
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<a class="publinks" href="https://pubmed.ncbi.nlm.nih.gov/35483960/" title="project website" ><i class="fas fa-external-link-alt"></i></a>
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<a class="publinks" href="https://genome.cshlp.org/content/32/5/878.long" title="pubmed link"><i class="fas fa-file-pdf"></i></a>
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<a class="publinks" href="https://pubmed.ncbi.nlm.nih.gov/35483960/" title="pubmed link" ><i class="fas fa-external-link-alt"></i></a>
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<a class="publinks" href="https://genome.cshlp.org/content/32/5/878.long" title="journal link"><i class="fas fa-file-pdf"></i></a>
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<div class="publication">
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<h5>PEGR: a flexible management platform for reproducible epigenomic and genomic research.</h5>
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<small>
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Shao D, Kellogg GD, Nematbakhsh A, Kuntala PK, Mahony S, Pugh BF, Lai WKM.
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Shao D, Kellogg GD, Nematbakhsh A, Kuntala PK, Mahony S, Pugh BF, Lai WKM.
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</small>
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<a class="publinks" href="https://pubmed.ncbi.nlm.nih.gov/35440038/" title="project website" ><i class="fas fa-external-link-alt"></i></a>
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<a class="publinks" href="https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02671-5" title="pubmed link"><i class="fas fa-file-pdf"></i></a>
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<a class="publinks" href="https://pubmed.ncbi.nlm.nih.gov/35440038/" title="pubmed link" ><i class="fas fa-external-link-alt"></i></a>
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<a class="publinks" href="https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02671-5" title="journal link"><i class="fas fa-file-pdf"></i></a>
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<h5>STENCIL: A web templating engine for visualizing and sharing life science datasets. </h5>
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<small>
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Sun Q, Nematbakhsh A, Kuntala PK, Kellogg G, Pugh BF, Lai WKM.
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Sun Q, Nematbakhsh A, Kuntala PK, Kellogg G, Pugh BF, Lai WKM.
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</small>
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<div class="d-flex">
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<a class="publinks" href="https://pubmed.ncbi.nlm.nih.gov/35139076/" title="project website" ><i class="fas fa-external-link-alt"></i></a>
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<a class="publinks" href="https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009859" title="pubmed link"><i class="fas fa-file-pdf"></i></a>
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<a class="publinks" href="https://pubmed.ncbi.nlm.nih.gov/35139076/" title="pubmed link" ><i class="fas fa-external-link-alt"></i></a>
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<a class="publinks" href="https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009859" title="journal link"><i class="fas fa-file-pdf"></i></a>
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<a class="publinks" href="https://pubmed.ncbi.nlm.nih.gov/34652274/" title="project website" ><i class="fas fa-external-link-alt"></i></a>
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<a class="publinks" href="https://elifesciences.org/articles/71013" title="pubmed link"><i class="fas fa-file-pdf"></i></a>
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<a class="publinks" href="https://pubmed.ncbi.nlm.nih.gov/34652274/" title="pubmed link" ><i class="fas fa-external-link-alt"></i></a>
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<a class="publinks" href="https://elifesciences.org/articles/71013" title="journal link"><i class="fas fa-file-pdf"></i></a>
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<h5>A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells.</h5>
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<small>
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Lai WKM, Mariani L, Rothschild G, Smith ER, Venters BJ, Blanda TR, Kuntala PK, Bocklund K, Mairose J, Dweikat SN, Mistretta K, Rossi MJ, James D, Anderson JT, Phanor SK, Zhang W, Zhao Z, Shah AP, Novitzky K, McAnarney E, Keogh MC, Shilatifard A, Basu U, Bulyk ML, Pugh BF.
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Lai WKM, Mariani L, Rothschild G, Smith ER, Venters BJ, Blanda TR, Kuntala PK, Bocklund K, Mairose J, Dweikat SN, Mistretta K, Rossi MJ, James D, Anderson JT, Phanor SK, Zhang W, Zhao Z, Shah AP, Novitzky K, McAnarney E, Keogh MC, Shilatifard A, Basu U, Bulyk ML, Pugh BF.
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<a class="publinks" href="https://pubmed.ncbi.nlm.nih.gov/34426512/" title="project website" ><i class="fas fa-external-link-alt"></i></a>
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<a class="publinks" href="https://genome.cshlp.org/content/31/9/1663.long" title="pubmed link"><i class="fas fa-file-pdf"></i></a>
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<a class="publinks" href="https://pubmed.ncbi.nlm.nih.gov/34426512/" title="pubmed link" ><i class="fas fa-external-link-alt"></i></a>
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<a class="publinks" href="https://genome.cshlp.org/content/31/9/1663.long" title="journal link"><i class="fas fa-file-pdf"></i></a>
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<!--div class="publication">
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{% for publication in site.data.publications.publications %}
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{% assign namefive = publicaiton.name[5] %}
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<a class="publinks" href="{{ publication.url }}" title="project website" ><i class="fas fa-external-link-alt"></i></a>
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<a class="publinks" href="https://doi.org/10.1101/2020.06.08.140046" title="pubmed link"><i class="fas fa-file-pdf"></i></a>
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<a class="publinks" href="https://doi.org/10.1101/2020.06.08.140046" title="pubmed link"><i class="fas fa-file-pdf"></i></a>
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{% endfor %}
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{% for publication in site.data.publications.publications %}

‎resources.html‎

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<!-- image grid or slideshow of screenshots -->
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<a class="publinks" href="http://yeastepigenome.org" title="project website" >Web <i class="fas fa-external-link-alt"></i></a>
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<a class="publinks" href="https://dx.doi.org/10.1038/s41586-021-03314-8" title="pubmed link"> (published in Nature)</a>
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<a class="publinks" href="http://yeastepigenome.org" title="project website"> Resource <i class="fas fa-external-link-alt"></i></a>
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<a class="publinks" href="https://pubmed.ncbi.nlm.nih.gov/33692541/" title="pubmed link"> PubMed <i class="fas fa-external-link-alt"></i></a>
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<a class="publinks" href="https://www.nature.com/articles/s41586-021-03314-8" title="journal link"> Nature <i class="fas fa-external-link-alt"></i></a>
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<!-- image grid or slideshow of screenshots -->
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<a class="publinks" href="http://odin.cac.cornell.edu/pcrp/" title="project website" >Web <i class="fas fa-external-link-alt"></i></a>
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<a class="publinks" href="https://pubmed.ncbi.nlm.nih.gov/34426512/" title="link"> BioRxiv <i class="fas fa-file-pdf"></i></a>
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<a class="publinks" href="http://odin.cac.cornell.edu/pcrp/" title="project website"> Resource <i class="fas fa-external-link-alt"></i></a>
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<a class="publinks" href="https://pubmed.ncbi.nlm.nih.gov/34426512/" title="pubmed link"> PubMed <i class="fas fa-external-link-alt"></i></a>
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<a class="publinks" href="https://genome.cshlp.org/content/31/9/1663.long" title="journal link"> Genome Research <i class="fas fa-external-link-alt"></i></a>
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<!--a class="publinks" href="https://pubmed.ncbi.nlm.nih.gov/35440038/" title="project website" >Web <i class="fas fa-external-link-alt"></i></a-->
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<a class="publinks" href="https://pubmed.ncbi.nlm.nih.gov/35440038/" title="link"> BioRxiv <i class="fas fa-file-pdf"></i></a>
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<!-- <a class="publinks" href="#" title="link"> <i class="fas fa-file-pdf"></i></a> -->
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<a class="publinks" href="https://github.com/seqcode/pegr" title="project website"> Github <i class="fas fa-external-link-alt"></i></a>
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<a class="publinks" href="https://pubmed.ncbi.nlm.nih.gov/35440038/" title="pubmed link"> PubMed <i class="fas fa-external-link-alt"></i></a>
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<a class="publinks" href="https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02671-5" title="journal link"> Genome Biology <i class="fas fa-external-link-alt"></i></a>
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