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Wave 4 — Atom position mapping (spyde/atoms/, extra atoms) #74

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@CSSFrancis

Uses Wave 1's engine (the Wave 1 epic): atom refinement is a batched 2D gaussian fit, so [1.3] and [1.9] do the heavy lifting and this wave is mostly interaction + structure.

Reference: https://atomap.org/dumbbell_lattice.html and https://atomap.org/gui_functions.html

Scope decision: atomap's GUI functions are matplotlib-based, so we reimplement the interaction over our own anyplotlib overlay — which vector_overlay.py already does for diffraction vectors (add/remove points, per-point state colouring). The atomap library supplies the structure/analysis, not the UI.


Plan: RELEASE_0_3_0_PLAN.md

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    0.3.0SpyDE 0.3.0 releaseepicMulti-task wavewave-4Wave 4

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