From 607a74988b4208e8cc2140d93cf3ea3e444ef983 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Fri, 6 Oct 2023 22:11:21 +0300 Subject: [PATCH 01/64] Create filter_dna_utils.py --- gene_code_utils/filter_dna_utils.py | 1 + 1 file changed, 1 insertion(+) create mode 100644 gene_code_utils/filter_dna_utils.py diff --git a/gene_code_utils/filter_dna_utils.py b/gene_code_utils/filter_dna_utils.py new file mode 100644 index 0000000..8b13789 --- /dev/null +++ b/gene_code_utils/filter_dna_utils.py @@ -0,0 +1 @@ + From d279d38d39ff3decd77135817ad8d041bc4ae0ba Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Fri, 6 Oct 2023 22:12:14 +0300 Subject: [PATCH 02/64] Add 'is_dna' function to check input sequence --- gene_code_utils/filter_dna_utils.py | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/gene_code_utils/filter_dna_utils.py b/gene_code_utils/filter_dna_utils.py index 8b13789..cf74f41 100644 --- a/gene_code_utils/filter_dna_utils.py +++ b/gene_code_utils/filter_dna_utils.py @@ -1 +1,13 @@ +def is_dna(seq: str) -> bool: + """ + Check if the input sequence consists only of DNA characters. + Args: + seq (str): The input DNA sequence. + + Returns: + bool: True if the sequence contains only DNA characters, False otherwise. + """ + unique_chars = set(seq) + nucleotides = set('ATGCatgc') + return unique_chars <= nucleotides From 21654784e8f03fbbfb2e47d16e2f50be9d8a160b Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Fri, 6 Oct 2023 22:13:28 +0300 Subject: [PATCH 03/64] Add 'count_gc_content' function --- gene_code_utils/filter_dna_utils.py | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) diff --git a/gene_code_utils/filter_dna_utils.py b/gene_code_utils/filter_dna_utils.py index cf74f41..6c2b860 100644 --- a/gene_code_utils/filter_dna_utils.py +++ b/gene_code_utils/filter_dna_utils.py @@ -11,3 +11,20 @@ def is_dna(seq: str) -> bool: unique_chars = set(seq) nucleotides = set('ATGCatgc') return unique_chars <= nucleotides + + +def count_gc_content(dna: str) -> float: + """ + Calculate the GC content percentage of a DNA sequence. + + Args: + dna (str): The input DNA sequence. + + Returns: + float: The GC content percentage. + """ + dna = dna.upper() + gc = dna.count('G') + dna.count('C') + at = dna.count('A') + dna.count('T') + gc_content = gc / (at + gc) * 100 + return gc_content From a934e0c40b30c6e90df22a8b13de3f0dd2578930 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Fri, 6 Oct 2023 22:17:24 +0300 Subject: [PATCH 04/64] Add 'is_in_gc_bounds' function to check sequence threshold --- gene_code_utils/filter_dna_utils.py | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gene_code_utils/filter_dna_utils.py b/gene_code_utils/filter_dna_utils.py index 6c2b860..2572e90 100644 --- a/gene_code_utils/filter_dna_utils.py +++ b/gene_code_utils/filter_dna_utils.py @@ -28,3 +28,25 @@ def count_gc_content(dna: str) -> float: at = dna.count('A') + dna.count('T') gc_content = gc / (at + gc) * 100 return gc_content + + +def is_in_gc_bounds(bounds: tuple, dna: str) -> bool: + """ + Check if the GC content of a DNA sequence falls within the specified bounds. + + Args: + bounds (tuple): A tuple specifying the lower and upper bounds for GC content. + dna (str): The input DNA sequence. + + Returns: + bool: True if the GC content is within the bounds, False otherwise. + """ + gc_content = count_gc_content(dna) + upper_bound = max(bounds[0], bounds[1]) + lower_bound = min(bounds[0], bounds[1]) + if upper_bound < 0 or lower_bound < 0: + raise ValueError("Invalid gc_bounds. Each value must be greater than zero.") + if upper_bound == lower_bound: + upper_bound += 1 + return lower_bound <= gc_content < upper_bound + From 85f43f7be744dc5f2b648a92ac91f6a9d67edcf2 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Fri, 6 Oct 2023 22:18:26 +0300 Subject: [PATCH 05/64] Add 'is_in_length_bounds' function to check sequence threshold --- gene_code_utils/filter_dna_utils.py | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gene_code_utils/filter_dna_utils.py b/gene_code_utils/filter_dna_utils.py index 2572e90..911fbba 100644 --- a/gene_code_utils/filter_dna_utils.py +++ b/gene_code_utils/filter_dna_utils.py @@ -50,3 +50,26 @@ def is_in_gc_bounds(bounds: tuple, dna: str) -> bool: upper_bound += 1 return lower_bound <= gc_content < upper_bound + +def is_in_length_bounds(bounds: tuple, dna: str) -> bool: + """ + Check if the length of a DNA sequence falls within the specified bounds. + + Args: + bounds (tuple): A tuple specifying the lower and upper bounds for sequence length. + dna (str): The input DNA sequence. + + Returns: + bool: True if the sequence length is within the bounds, False otherwise. + """ + dna_length = len(dna) + lower_bound = min(bounds[0], bounds[1]) + upper_bound = max(bounds[0], bounds[1]) + if upper_bound < 0 or lower_bound < 0: + raise ValueError("Invalid length_bounds. Each value must be greater than zero.") + if upper_bound == lower_bound: + upper_bound += 1 + return lower_bound <= dna_length < upper_bound + + + From d3a3456548374f875fffcea48458568f6930bf22 Mon Sep 17 00:00:00 2001 From: Anastasia Date: Fri, 6 Oct 2023 22:51:49 +0300 Subject: [PATCH 06/64] Add 'check_quality' function to check sequence threshold --- gene_code_utils/filter_dna_utils.py | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) diff --git a/gene_code_utils/filter_dna_utils.py b/gene_code_utils/filter_dna_utils.py index 911fbba..7eb2992 100644 --- a/gene_code_utils/filter_dna_utils.py +++ b/gene_code_utils/filter_dna_utils.py @@ -72,4 +72,23 @@ def is_in_length_bounds(bounds: tuple, dna: str) -> bool: return lower_bound <= dna_length < upper_bound +def check_quality(quality_threshold: int, quality: str) -> bool: + """ + Check if the average quality score of a sequence exceeds a threshold. + + Args: + quality_threshold (int): The quality threshold for filtering sequences. + quality (str): The quality string (in Phred+33 format). + Returns: + bool: True if the average quality score is above the threshold, False otherwise. + """ + if quality_threshold < 0 or quality_threshold > 42: + raise ValueError("Invalid quality_threshold. Must be an integer in the range [0, 42]") + score = 0 + for char in quality: + score += ord(char) - 33 + if ord(char) < 33 or ord(char) > 126: + return False + avg_quality = score / len(quality) + return quality_threshold <= avg_quality From 547e14ed10940ec3e18bbc4ee3b8d8611f8bed57 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Fri, 6 Oct 2023 22:56:42 +0300 Subject: [PATCH 07/64] Create gene_code_main_operations --- gene_code_main_operations | 1 + 1 file changed, 1 insertion(+) create mode 100644 gene_code_main_operations diff --git a/gene_code_main_operations b/gene_code_main_operations new file mode 100644 index 0000000..8b13789 --- /dev/null +++ b/gene_code_main_operations @@ -0,0 +1 @@ + From 44a9be217604c3d348d84cffbece5844497691c5 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Fri, 6 Oct 2023 22:58:41 +0300 Subject: [PATCH 08/64] Add 'filter_dna' to filter sequences by GC-content, length and quality --- gene_code_main_operations | 47 +++++++++++++++++++++++++++++++++++++++ 1 file changed, 47 insertions(+) diff --git a/gene_code_main_operations b/gene_code_main_operations index 8b13789..4f209f3 100644 --- a/gene_code_main_operations +++ b/gene_code_main_operations @@ -1 +1,48 @@ +from typing import Dict, Tuple, Union +from filter_dna_utils import is_dna, is_in_gc_bounds, is_in_length_bounds, check_quality + +def filter_dna(seqs: Dict[str, Tuple[str, str]], gc_bounds: Union[Tuple[int, int], int] = (0, 100), + length_bounds: Union[Tuple[int, int], int] = (0, 2**32), quality_threshold: int = 0) -> Dict[str, Tuple[str, str]]: + """ + Filter and process a dictionary of FASTQ sequences based on specified criteria. + + Args: + seqs (dict): A dictionary containing FASTQ sequences. + Key: Sequence name (string). + Value: Tuple of two strings (sequence, quality). + gc_bounds (tuple or int): GC content filtering bounds. + If a tuple, it represents the lower and upper bounds (inclusive) for GC content as percentages. + If an int, it represents the upper bound for GC content as a percentage. + length_bounds (tuple or int, optional): Length filtering bounds. + If a tuple, it represents the lower and upper bounds (inclusive) for sequence length. + If an int, it represents the upper bound for sequence length. + Default is (0, 2**32). + quality_threshold (int, optional): Quality threshold for filtering sequences based on average quality. + Sequences with an average quality below this threshold will be discarded. + Default is 0 (phred33 scale). + + Returns: + filtered_seqs (dict): A dictionary containing filtered FASTQ sequences. + Key: Sequence name (string). + Value: Tuple of two strings (sequence, quality). + + Example: + filtered_seqs = filtr_dna(seqs, gc_bounds=(20, 80), length_bounds=50, quality_threshold=30) + - here gc_bounds interval will be [20, 80) and length_bounds will be [0, 50]. + quality_threshold will be 30 <= sequence score + + Warnings: If you prefer + """ + + filtered_seqs = dict() + for fastq_name, (seq, quality) in seqs.items(): + if is_dna(seq): + if type(gc_bounds) == int: + gc_bounds = (0, gc_bounds + 1) + if type(length_bounds) == int: + length_bounds = (0, length_bounds + 1) + if is_in_gc_bounds(gc_bounds, seq) and is_in_length_bounds(length_bounds, seq) and check_quality(quality_threshold, quality): + filtered_seqs[fastq_name] = (seq, quality) + + return filtered_seqs From 499b0e97a3910ba384da699f516292ef6a04c7cf Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 7 Oct 2023 16:05:21 +0300 Subject: [PATCH 09/64] Create amino_analyzer_utils.py --- gene_code_utils/amino_analyzer_utils.py | 1 + 1 file changed, 1 insertion(+) create mode 100644 gene_code_utils/amino_analyzer_utils.py diff --git a/gene_code_utils/amino_analyzer_utils.py b/gene_code_utils/amino_analyzer_utils.py new file mode 100644 index 0000000..8b13789 --- /dev/null +++ b/gene_code_utils/amino_analyzer_utils.py @@ -0,0 +1 @@ + From 7a35ab56b017df9bdc2c6fe40cf2dc588c738ecb Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 7 Oct 2023 16:07:34 +0300 Subject: [PATCH 10/64] Add 'is_aa' function to check if a sequence contains only amino acids --- gene_code_utils/amino_analyzer_utils.py | 16 ++++++++++++++++ 1 file changed, 16 insertions(+) diff --git a/gene_code_utils/amino_analyzer_utils.py b/gene_code_utils/amino_analyzer_utils.py index 8b13789..54b865d 100644 --- a/gene_code_utils/amino_analyzer_utils.py +++ b/gene_code_utils/amino_analyzer_utils.py @@ -1 +1,17 @@ +AA_SET = set(['V', 'I', 'L', 'E', 'Q', 'D', 'N', 'H', 'W', 'F', 'Y', 'R', 'K', 'S', 'T', 'M', 'A', 'G', 'P', 'C', + 'v', 'i', 'l', 'e', 'q', 'd', 'n', 'h', 'w', 'f', 'y', 'r', 'k', 's', 't', 'm', 'a', 'g', 'p', 'c']) + + +def is_aa(seq: str) -> bool: + """ + Check if a sequence contains only amino acids. + + Args: + seq (str): The input sequence to be checked. + + Returns: + bool: True if the sequence contains only amino acids, False otherwise. + """ + unique_chars = set(seq) + return unique_chars <= AA_SET From 5349b7f95c2d34bca101900157544df9b7017d5c Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 7 Oct 2023 16:08:54 +0300 Subject: [PATCH 11/64] Add 'choose_weight' function to choose the weight type --- gene_code_utils/amino_analyzer_utils.py | 30 +++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gene_code_utils/amino_analyzer_utils.py b/gene_code_utils/amino_analyzer_utils.py index 54b865d..7411a88 100644 --- a/gene_code_utils/amino_analyzer_utils.py +++ b/gene_code_utils/amino_analyzer_utils.py @@ -15,3 +15,33 @@ def is_aa(seq: str) -> bool: unique_chars = set(seq) return unique_chars <= AA_SET + +def choose_weight(weight: str) -> dict: + """ + Choose the weight type of amino acids - average or monoisotopic. + + Args: + weight (str): The type of weight to choose, either 'average' or 'monoisotopic'. + + Returns: + dict: A dictionary mapping amino acids to their weights based on the chosen type. + """ + if weight == 'average': + average_weights = { + 'A': 71.0788, 'R': 156.1875, 'N': 114.1038, 'D': 115.0886, 'C': 103.1388, + 'E': 129.1155, 'Q': 128.1307, 'G': 57.0519, 'H': 137.1411, 'I': 113.1594, + 'L': 113.1594, 'K': 128.1741, 'M': 131.1926, 'F': 147.1766, 'P': 97.1167, + 'S': 87.0782, 'T': 101.1051, 'W': 186.2132, 'Y': 163.1760, 'V': 99.1326 + } + elif weight == 'monoisotopic': + monoisotopic_weights = { + 'A': 71.03711, 'R': 156.10111, 'N': 114.04293, 'D': 115.02694, 'C': 103.00919, + 'E': 129.04259, 'Q': 128.05858, 'G': 57.02146, 'H': 137.05891, 'I': 113.08406, + 'L': 113.08406, 'K': 128.09496, 'M': 131.04049, 'F': 147.06841, 'P': 97.05276, + 'S': 87.03203, 'T': 101.04768, 'W': 186.07931, 'Y': 163.06333, 'V': 99.06841 + } + else: + raise ValueError(f"I do not know what '{weight}' is :( \n Read help or just do not write anything except your sequence") + + return average_weights if weight == 'average' else monoisotopic_weights + From e5d408b2ecf109ff08e1ac480233150f2d8cbe17 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 7 Oct 2023 16:10:18 +0300 Subject: [PATCH 12/64] Add 'aa_weight' function to calculate the protein weight --- gene_code_utils/amino_analyzer_utils.py | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) diff --git a/gene_code_utils/amino_analyzer_utils.py b/gene_code_utils/amino_analyzer_utils.py index 7411a88..14ad3b0 100644 --- a/gene_code_utils/amino_analyzer_utils.py +++ b/gene_code_utils/amino_analyzer_utils.py @@ -45,3 +45,20 @@ def choose_weight(weight: str) -> dict: return average_weights if weight == 'average' else monoisotopic_weights + +def aa_weight(seq: str, weight: str = 'average') -> float: + """ + Calculate the amino acids weight in a protein sequence. + + Args: + seq (str): The amino acid sequence to calculate the weight for. + weight (str, optional): The type of weight to use, either 'average' or 'monoisotopic'. Default is 'average'. + + Returns: + float: The calculated weight of the amino acid sequence. + """ + weights_aa = choose_weight(weight) + final_weight = 0 + for aa in seq.upper(): + final_weight += weights_aa[aa] + return round(final_weight, 3) From f142af358d46f7ab6b92139bdf91fc5d46bdb20c Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 7 Oct 2023 16:12:11 +0300 Subject: [PATCH 13/64] Add 'count_hydroaffinity' function to count it in protein sequence --- gene_code_utils/amino_analyzer_utils.py | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gene_code_utils/amino_analyzer_utils.py b/gene_code_utils/amino_analyzer_utils.py index 14ad3b0..7de8902 100644 --- a/gene_code_utils/amino_analyzer_utils.py +++ b/gene_code_utils/amino_analyzer_utils.py @@ -1,5 +1,7 @@ AA_SET = set(['V', 'I', 'L', 'E', 'Q', 'D', 'N', 'H', 'W', 'F', 'Y', 'R', 'K', 'S', 'T', 'M', 'A', 'G', 'P', 'C', 'v', 'i', 'l', 'e', 'q', 'd', 'n', 'h', 'w', 'f', 'y', 'r', 'k', 's', 't', 'm', 'a', 'g', 'p', 'c']) +HYDROPHOBIC_AA = ['A', 'V', 'L', 'I', 'P', 'F', 'W', 'M'] +HYDROPHILIC_AA = ['R', 'N', 'D', 'C', 'Q', 'E', 'G', 'H', 'K', 'S', 'T', 'Y'] def is_aa(seq: str) -> bool: @@ -62,3 +64,26 @@ def aa_weight(seq: str, weight: str = 'average') -> float: for aa in seq.upper(): final_weight += weights_aa[aa] return round(final_weight, 3) + + +def count_hydroaffinity(seq: str) -> list: + """ + Count the quantity of hydrophobic and hydrophilic amino acids in a protein sequence. + + Args: + seq (str): The protein sequence for which to count hydrophobic and hydrophilic amino acids. + + Returns: + tuple: A tuple containing the count of hydrophobic and hydrophilic amino acids, respectively. + """ + hydrophobic_count = 0 + hydrophilic_count = 0 + seq = seq.upper() + + for aa in seq: + if aa in HYDROPHOBIC_AA: + hydrophobic_count += 1 + elif aa in HYDROPHILIC_AA: + hydrophilic_count += 1 + + return [hydrophobic_count, hydrophilic_count] From 1d0610c37a44872dc0a7ce4870f36ec0de2dad76 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 7 Oct 2023 16:14:08 +0300 Subject: [PATCH 14/64] Add 'peptide_cutter' to identifies cleavage sites for "trypsin" and "chymotrypsin" --- gene_code_utils/amino_analyzer_utils.py | 33 +++++++++++++++++++++++++ 1 file changed, 33 insertions(+) diff --git a/gene_code_utils/amino_analyzer_utils.py b/gene_code_utils/amino_analyzer_utils.py index 7de8902..306958a 100644 --- a/gene_code_utils/amino_analyzer_utils.py +++ b/gene_code_utils/amino_analyzer_utils.py @@ -87,3 +87,36 @@ def count_hydroaffinity(seq: str) -> list: hydrophilic_count += 1 return [hydrophobic_count, hydrophilic_count] + + +def peptide_cutter(sequence: str, enzyme: str = "trypsin") -> list: + """ + This function identifies cleavage sites in a given peptide sequence using a specified enzyme. + + Args: + sequence (str): The input peptide sequence. + enzyme (str): The enzyme to be used for cleavage. Choose between "trypsin" and "chymotrypsin". Default is "trypsin". + + Returns: + str: A message indicating the number and positions of cleavage sites, or an error message if an invalid enzyme is provided. + """ + cleavage_sites = [] + if enzyme not in ("trypsin", "chymotrypsin"): + return "You have chosen an enzyme that is not provided. Please choose between trypsin and chymotrypsin." + + if enzyme == "trypsin": # Trypsin cuts peptide chains mainly at the carboxyl side of the amino acids lysine or arginine. + for aa in range(len(sequence)-1): + if sequence[aa] in ['K', 'R', 'k', 'r'] and sequence[aa+1] not in ['P','p']: + cleavage_sites.append(aa + 1) + + if enzyme == "chymotrypsin": # Chymotrypsin preferentially cleaves at Trp, Tyr and Phe in position P1(high specificity) + for aa in range(len(sequence) - 1): + if sequence[aa] in ['W', 'Y', 'F', 'w', 'y', 'f'] and sequence[aa+1] not in ['P','p']: + cleavage_sites.append(aa + 1) + + if cleavage_sites: + print( f"Found {len(cleavage_sites)} {enzyme} cleavage sites at positions {', '.join(map(str, cleavage_sites))}") + return cleavage_sites# list(', '.join(map(str, cleavage_sites))) + else: + print(f"No {enzyme} cleavage sites were found.") + return 0 From 17859ad3632a3c0c64fb88f24b21698a10231068 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 7 Oct 2023 16:16:00 +0300 Subject: [PATCH 15/64] Add 'one_to_three_letter_code' function to convert protein sequence --- gene_code_utils/amino_analyzer_utils.py | 16 ++++++++++++++++ 1 file changed, 16 insertions(+) diff --git a/gene_code_utils/amino_analyzer_utils.py b/gene_code_utils/amino_analyzer_utils.py index 306958a..31e519c 100644 --- a/gene_code_utils/amino_analyzer_utils.py +++ b/gene_code_utils/amino_analyzer_utils.py @@ -2,6 +2,8 @@ 'v', 'i', 'l', 'e', 'q', 'd', 'n', 'h', 'w', 'f', 'y', 'r', 'k', 's', 't', 'm', 'a', 'g', 'p', 'c']) HYDROPHOBIC_AA = ['A', 'V', 'L', 'I', 'P', 'F', 'W', 'M'] HYDROPHILIC_AA = ['R', 'N', 'D', 'C', 'Q', 'E', 'G', 'H', 'K', 'S', 'T', 'Y'] +AMINO_ACIDS = {'A': 'Ala', 'C': 'Cys', 'D': 'Asp', 'E': 'Glu', 'F': 'Phe', 'G': 'Gly', 'H': 'His', 'I': 'Ile', 'K': 'Lys', 'L': 'Leu', + 'M': 'Met', 'N': 'Asn', 'P': 'Pro', 'Q': 'Gln', 'R': 'Arg', 'S': 'Ser', 'T': 'Thr', 'V': 'Val', 'W': 'Trp', 'Y': 'Tyr'} def is_aa(seq: str) -> bool: @@ -120,3 +122,17 @@ def peptide_cutter(sequence: str, enzyme: str = "trypsin") -> list: else: print(f"No {enzyme} cleavage sites were found.") return 0 + + +def one_to_three_letter_code(sequence: str) -> str: + """ + This function converts a protein sequence from one-letter amino acid code to three-letter code. + + Args: + sequence (str): The input protein sequence in one-letter code. + + Returns: + str: The converted protein sequence in three-letter code. + """ + three_letter_code = [AMINO_ACIDS.get(aa.upper()) for aa in sequence] + return '-'.join(three_letter_code) From 8e2e973e2ecc40d407db6c7bc62af32cdee49f2b Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 7 Oct 2023 16:17:13 +0300 Subject: [PATCH 16/64] Add 'sulphur_containing_aa_counter' function This function counts sulphur-containing amino acids (Cysteine and Methionine) in a protein sequence. --- gene_code_utils/amino_analyzer_utils.py | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) diff --git a/gene_code_utils/amino_analyzer_utils.py b/gene_code_utils/amino_analyzer_utils.py index 31e519c..f01958e 100644 --- a/gene_code_utils/amino_analyzer_utils.py +++ b/gene_code_utils/amino_analyzer_utils.py @@ -136,3 +136,22 @@ def one_to_three_letter_code(sequence: str) -> str: """ three_letter_code = [AMINO_ACIDS.get(aa.upper()) for aa in sequence] return '-'.join(three_letter_code) + + +def sulphur_containing_aa_counter(sequence: str) -> int: + """ + This function counts sulphur-containing amino acids (Cysteine and Methionine) in a protein sequence. + + Args: + sequence (str): The input protein sequence in one-letter code. + + Returns: + str: The number of sulphur-containing amino acids in a protein sequence. + """ + counter = 0 + sequence = sequence.upper() + for aa in sequence: + if aa == 'C' or aa == 'M': + counter += 1 + answer = str(counter) + return answer From 8b2a489941d67472a0106205858c4b3a3ff41d66 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 7 Oct 2023 16:31:14 +0300 Subject: [PATCH 17/64] Add 'run_amino_analyzer' function to analyse protein sequence in one-letter code --- gene_code_main_operations | 52 ++++++++++++++++++++++++++++++++++++++- 1 file changed, 51 insertions(+), 1 deletion(-) diff --git a/gene_code_main_operations b/gene_code_main_operations index 4f209f3..9edbcb1 100644 --- a/gene_code_main_operations +++ b/gene_code_main_operations @@ -1,5 +1,7 @@ from typing import Dict, Tuple, Union -from filter_dna_utils import is_dna, is_in_gc_bounds, is_in_length_bounds, check_quality +from gene_code_utils.filter_dna_utils import is_dna, is_in_gc_bounds, is_in_length_bounds, check_quality +from gene_code_utils.amino_analyzer_utils import aa_weight, count_hydroaffinity, peptide_cutter, one_to_three_letter_code, sulphur_containing_aa_counter + def filter_dna(seqs: Dict[str, Tuple[str, str]], gc_bounds: Union[Tuple[int, int], int] = (0, 100), length_bounds: Union[Tuple[int, int], int] = (0, 2**32), quality_threshold: int = 0) -> Dict[str, Tuple[str, str]]: @@ -46,3 +48,51 @@ def filter_dna(seqs: Dict[str, Tuple[str, str]], gc_bounds: Union[Tuple[int, int return filtered_seqs + +from amino_analyzer_utils import aa_weight, count_hydroaffinity, peptide_cutter, one_to_three_letter_code, sulphur_containing_aa_counter + + +def run_amino_analyzer(sequence: str, procedure: str, *, weight_type: str = 'average', enzyme: str = 'trypsin'): + """ + This is the main function to run the amino-analyzer.py tool. + + Args: + sequence (str): The input protein sequence in one-letter code. + procedure (str): amino-analyzer.py tool has 5 functions at all: + 1. aa_weight - Calculate the amino acids weight in a protein sequence. Return float weight + weight_type = 'average': default argument for 'aa_weight' function. weight_type = 'monoisotopic' can be used as a second option. + 2. count_hydroaffinity - Count the quantity of hydrophobic and hydrophilic amino acids in a protein sequence. Return list in order: hydrophobic, hydrophilic + 3. peptide_cutter - This function identifies cleavage sites in a given peptide sequence using a specified enzyme. Return list of cleavage sites + enzyme = 'trypsin': default argument for 'peptide_cutter' function. enzyme = 'chymotrypsin' can be used as a second option. + 4. one_to_three_letter_code - This function converts a protein sequence from one-letter amino acid code to three-letter code. Return string of amino acids in three-letter code + 5. sulphur_containing_aa_counter - This function counts sulphur-containing amino acids in a protein sequence. Return quantaty of sulphur-containing amino acids + + Returns: + The result of the specified procedure. + + Raises: + ValueError: If the procedure is not recognized or if the input sequence contains non-amino acid characters. + + Note: + - Supported amino acid characters: V, I, L, E, Q, D, N, H, W, F, Y, R, K, S, T, M, A, G, P, C, v, i, l, e, q, d, n, h, w, f, y, r, k, s, t, m, a, g, p, c. + - Make sure to provide a valid procedure name and sequence for analysis. + """ + + procedures = ['aa_weight', 'count_hydroaffinity', 'peptide_cutter', 'one_to_three_letter_code', 'sulphur_containing_aa_counter'] + if procedure not in procedures: + raise ValueError(f"Incorrect procedure. Acceptable procedures: {', '.join(procedures)}") + + if not is_aa(sequence): + raise ValueError("Incorrect sequence. Only amino acids are allowed (V, I, L, E, Q, D, N, H, W, F, Y, R, K, S, T, M, A, G, P, C, v, i, l, e, q, d, n, h, w, f, y, r, k, s, t, m, a, g, p, c).") + + if procedure == 'aa_weight': + result = aa_weight(sequence, weight_type) + elif procedure == 'count_hydroaffinity': + result = count_hydroaffinity(sequence) + elif procedure == 'peptide_cutter': + result = peptide_cutter(sequence, enzyme) + elif procedure == 'one_to_three_letter_code': + result = one_to_three_letter_code(sequence) + elif procedure == 'sulphur_containing_aa_counter': + result = sulphur_containing_aa_counter(sequence) + return result From 167f5059afeff418593bf2c33f1a871c04f82b4d Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 7 Oct 2023 19:18:09 +0300 Subject: [PATCH 18/64] Create dna_rna_tools_utils.py --- gene_code_utils/dna_rna_tools_utils.py | 1 + 1 file changed, 1 insertion(+) create mode 100644 gene_code_utils/dna_rna_tools_utils.py diff --git a/gene_code_utils/dna_rna_tools_utils.py b/gene_code_utils/dna_rna_tools_utils.py new file mode 100644 index 0000000..8b13789 --- /dev/null +++ b/gene_code_utils/dna_rna_tools_utils.py @@ -0,0 +1 @@ + From 9690bbd6d741caa2fed179a130747e1a0c7cdf10 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 7 Oct 2023 19:19:11 +0300 Subject: [PATCH 19/64] Add 'is_dna' function to check if a sequence is DNA --- gene_code_utils/dna_rna_tools_utils.py | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/gene_code_utils/dna_rna_tools_utils.py b/gene_code_utils/dna_rna_tools_utils.py index 8b13789..b5f7983 100644 --- a/gene_code_utils/dna_rna_tools_utils.py +++ b/gene_code_utils/dna_rna_tools_utils.py @@ -1 +1,12 @@ +def is_dna(seq: str) -> bool: + """ + Check if a sequence is DNA. + Args: + seq (str): The input sequence to check. + + Returns: + bool: True if the sequence is DNA, False otherwise. + """ + unique_chars = set(seq) + return unique_chars <= DNA From 9cacb05d9316bc88375dfb40469ba15b6d23f35d Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 7 Oct 2023 19:20:01 +0300 Subject: [PATCH 20/64] Add 'is_rna' function to check if a sequence is RNA --- gene_code_utils/dna_rna_tools_utils.py | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) diff --git a/gene_code_utils/dna_rna_tools_utils.py b/gene_code_utils/dna_rna_tools_utils.py index b5f7983..779ee38 100644 --- a/gene_code_utils/dna_rna_tools_utils.py +++ b/gene_code_utils/dna_rna_tools_utils.py @@ -1,3 +1,7 @@ +DNA = set ('ATGCatgc') +RNA = set ('AUGCaugc') + + def is_dna(seq: str) -> bool: """ Check if a sequence is DNA. @@ -10,3 +14,17 @@ def is_dna(seq: str) -> bool: """ unique_chars = set(seq) return unique_chars <= DNA + + +def is_rna(seq: str) -> bool: + """ + Check if a sequence is RNA. + + Args: + seq (str): The input sequence to check. + + Returns: + bool: True if the sequence is RNA, False otherwise. + """ + unique_chars = set(seq) + return unique_chars <= RNA From 11d51125358743c51b0e427151d2c20791442dea Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 7 Oct 2023 19:23:11 +0300 Subject: [PATCH 21/64] Add 'reverse' function to reverse a sequence --- gene_code_utils/dna_rna_tools_utils.py | 13 +++++++++++++ 1 file changed, 13 insertions(+) diff --git a/gene_code_utils/dna_rna_tools_utils.py b/gene_code_utils/dna_rna_tools_utils.py index 779ee38..1cb9361 100644 --- a/gene_code_utils/dna_rna_tools_utils.py +++ b/gene_code_utils/dna_rna_tools_utils.py @@ -28,3 +28,16 @@ def is_rna(seq: str) -> bool: """ unique_chars = set(seq) return unique_chars <= RNA + + +def reverse(seq: str) -> str: + """ + Reverse a sequence. + + Args: + seq (str): The input sequence. + + Returns: + str: The reversed sequence. + """ + return seq[::-1] From bed0dcc9fda8eebc48236d0528ec34a8729a5025 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 7 Oct 2023 19:24:42 +0300 Subject: [PATCH 22/64] Add 'complement' function to find complement of sequence --- gene_code_utils/dna_rna_tools_utils.py | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gene_code_utils/dna_rna_tools_utils.py b/gene_code_utils/dna_rna_tools_utils.py index 1cb9361..4a4ff58 100644 --- a/gene_code_utils/dna_rna_tools_utils.py +++ b/gene_code_utils/dna_rna_tools_utils.py @@ -41,3 +41,25 @@ def reverse(seq: str) -> str: str: The reversed sequence. """ return seq[::-1] + + +def complement(seq: str) -> str: + """ + Find the complement of a DNA or RNA sequence. + + Args: + seq (str): The input DNA or RNA sequence. + + Returns: + str: The complemented sequence. + """ + new_seq = [] + if is_dna(seq): + complement_dict = {'A': 'T', 'a': 't', 'C': 'G', 'c': 'g', 'G': 'C', 'g': 'c', 'T': 'A', 't': 'a'} + elif is_rna(seq): + complement_dict = {'A': 'U', 'a': 'u', 'C': 'G', 'c': 'g', 'G': 'C', 'g': 'c', 'U': 'A', 'u': 'a'} + else: + raise ValueError("Input sequence must be DNA or RNA.") + for i in seq: + new_seq.append(complement_dict.get(i)) + return ''.join(new_seq) From e40468cd8280d5984a2b3b3e082ac62846a4be0a Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 7 Oct 2023 19:25:55 +0300 Subject: [PATCH 23/64] Add 'reverse_complement' function to find reverse complement sequence --- gene_code_utils/dna_rna_tools_utils.py | 13 +++++++++++++ 1 file changed, 13 insertions(+) diff --git a/gene_code_utils/dna_rna_tools_utils.py b/gene_code_utils/dna_rna_tools_utils.py index 4a4ff58..9b38187 100644 --- a/gene_code_utils/dna_rna_tools_utils.py +++ b/gene_code_utils/dna_rna_tools_utils.py @@ -63,3 +63,16 @@ def complement(seq: str) -> str: for i in seq: new_seq.append(complement_dict.get(i)) return ''.join(new_seq) + + +def reverse_complement(seq: str) -> str: + """ + Find the reverse complement of a DNA or RNA sequence. + + Args: + seq (str): The input DNA or RNA sequence. + + Returns: + str: The reverse complemented sequence. + """ + return reverse(complement(seq)) From d9dbaa8c3ea375dc59e267921f0eadd583cb2936 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 7 Oct 2023 19:26:56 +0300 Subject: [PATCH 24/64] Add 'reverse_transcription' function to reverse transcription of RNA --- gene_code_utils/dna_rna_tools_utils.py | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) diff --git a/gene_code_utils/dna_rna_tools_utils.py b/gene_code_utils/dna_rna_tools_utils.py index 9b38187..1a7e5e7 100644 --- a/gene_code_utils/dna_rna_tools_utils.py +++ b/gene_code_utils/dna_rna_tools_utils.py @@ -76,3 +76,23 @@ def reverse_complement(seq: str) -> str: str: The reverse complemented sequence. """ return reverse(complement(seq)) + + +def reverse_transcription(seq: str) -> str: + """ + Perform reverse transcription on an RNA sequence. + + Args: + seq (str): The input RNA sequence. + + Returns: + str: The reverse transcribed DNA sequence. + """ + c_dna = [] + u_to_t = {'U': 'T', 'u': 't'} + for i in seq: + if i in u_to_t: + c_dna.append(u_to_t.get(i)) + else: + c_dna.append(i) + return ''.join(c_dna) From 0a64a42645e9d9911f5dc707d59ee628c47f2c96 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 7 Oct 2023 19:28:14 +0300 Subject: [PATCH 25/64] Add 'type_rna_or_dna' function to detect type of sequence --- gene_code_utils/dna_rna_tools_utils.py | 34 ++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gene_code_utils/dna_rna_tools_utils.py b/gene_code_utils/dna_rna_tools_utils.py index 1a7e5e7..1efb047 100644 --- a/gene_code_utils/dna_rna_tools_utils.py +++ b/gene_code_utils/dna_rna_tools_utils.py @@ -30,6 +30,40 @@ def is_rna(seq: str) -> bool: return unique_chars <= RNA +def type_rna_or_dna(seqs: List[str]) -> str: + """ + Determine the type of RNA or DNA from a list of sequences. + + Args: + seqs (List[str]): List of sequences to determine their type. + + Returns: + str: 'DNA' if all sequences are DNA, 'RNA' if all sequences are RNA, + 'MIXED' if there are both DNA and RNA sequences, or raises a ValueError for unsupported sequences. + """ + counter_dna = 0 + counter_rna = 0 + ambigiuos = 0 + for i in seqs: + if is_dna(i) and is_rna(i): + ambigiuos = ambigiuos+1 + else: + if is_dna(i): + counter_dna=counter_dna+1 + elif is_rna(i): + counter_rna=counter_rna+1 + if (counter_dna + ambigiuos) == len(seqs): + print('You have ', ambigiuos, ' ambigious NA. I suppose they are DNA') + return "DNA" + elif (counter_rna + ambigiuos) == len(seqs): + print('You have ', ambigiuos, ' ambigious NA. I suppose they are RNA') + return "RNA" + elif (counter_dna + counter_rna + ambigiuos) == len(seqs): + return "MIXED" + else: + raise ValueError("I can work only with RNA and DNA. \n Check your sequences and try one more time!") + + def reverse(seq: str) -> str: """ Reverse a sequence. From 8855e077a96f549371a9fc4aa2629ab910ea499d Mon Sep 17 00:00:00 2001 From: Anastasia Date: Sat, 7 Oct 2023 19:49:39 +0300 Subject: [PATCH 26/64] Add 'has_start_codon' function to check if RNA has start codon --- gene_code_utils/dna_rna_tools_utils.py | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) diff --git a/gene_code_utils/dna_rna_tools_utils.py b/gene_code_utils/dna_rna_tools_utils.py index 1efb047..d1da2e0 100644 --- a/gene_code_utils/dna_rna_tools_utils.py +++ b/gene_code_utils/dna_rna_tools_utils.py @@ -130,3 +130,22 @@ def reverse_transcription(seq: str) -> str: else: c_dna.append(i) return ''.join(c_dna) + + +def has_start_codon(seq: str) -> Union[bool, str]: + """ + Check if an RNA sequence has a start codon. + + Args: + seq (str): The input RNA sequence. + + Returns: + Union[bool, str]: True if a start codon is found, False if not found, + '?' if the input is DNA and needs to be transcribed first. + """ + if is_rna(seq): + return "AUG" in seq.upper() + if is_dna(seq): + print("First, you should transcribe your DNA.") + return '?' + raise ValueError("Input sequence must be DNA or RNA.") From 1af134aa84b6ad05167420758a14751f88e56c59 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 7 Oct 2023 20:10:22 +0300 Subject: [PATCH 27/64] Add 'is_palindrome' function to check if a sequence is a palindrome --- gene_code_utils/dna_rna_tools_utils.py | 14 ++++++++++++++ 1 file changed, 14 insertions(+) diff --git a/gene_code_utils/dna_rna_tools_utils.py b/gene_code_utils/dna_rna_tools_utils.py index d1da2e0..7487268 100644 --- a/gene_code_utils/dna_rna_tools_utils.py +++ b/gene_code_utils/dna_rna_tools_utils.py @@ -149,3 +149,17 @@ def has_start_codon(seq: str) -> Union[bool, str]: print("First, you should transcribe your DNA.") return '?' raise ValueError("Input sequence must be DNA or RNA.") + + +def is_palindrome(seq: str) -> bool: + """ + Check if a sequence is a palindrome. + + Args: + seq (str): The input sequence to check. + + Returns: + bool: True if the sequence is a palindrome, False otherwise. + """ + new_seq = reverse_complement(seq) + return new_seq.upper() == seq.upper() From 49e1d63d984643fe67543b83d9582c3539b34f81 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 7 Oct 2023 20:13:05 +0300 Subject: [PATCH 28/64] Add 'transcribe' function to transcribe a DNA sequence into RNA --- gene_code_utils/dna_rna_tools_utils.py | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/gene_code_utils/dna_rna_tools_utils.py b/gene_code_utils/dna_rna_tools_utils.py index 7487268..06707cd 100644 --- a/gene_code_utils/dna_rna_tools_utils.py +++ b/gene_code_utils/dna_rna_tools_utils.py @@ -1,5 +1,12 @@ DNA = set ('ATGCatgc') RNA = set ('AUGCaugc') +TRANSCRIPTION_TABLE = { + "a": "a", "A": "A", + "t": "u", "T": "U", + "u": "t", "U": "T", + "g": "g", "G": "G", + "c": "c", "C": "C" +} def is_dna(seq: str) -> bool: @@ -163,3 +170,7 @@ def is_palindrome(seq: str) -> bool: """ new_seq = reverse_complement(seq) return new_seq.upper() == seq.upper() + + +def transcribe(seq): + return ''.join([TRANSCRIPTION_TABLE[i] for i in seq]) From a95b16877a722bc5c0618c16b49f50781873a07e Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 7 Oct 2023 20:16:22 +0300 Subject: [PATCH 29/64] Add 'run_dna_rna_tools' function to make various opertaions with DNA/RNA --- gene_code_main_operations | 47 +++++++++++++++++++++++++++++++++++++++ 1 file changed, 47 insertions(+) diff --git a/gene_code_main_operations b/gene_code_main_operations index 9edbcb1..cfcf3bc 100644 --- a/gene_code_main_operations +++ b/gene_code_main_operations @@ -1,6 +1,8 @@ from typing import Dict, Tuple, Union from gene_code_utils.filter_dna_utils import is_dna, is_in_gc_bounds, is_in_length_bounds, check_quality from gene_code_utils.amino_analyzer_utils import aa_weight, count_hydroaffinity, peptide_cutter, one_to_three_letter_code, sulphur_containing_aa_counter +from gene_code_utils.dna_rna_tools_utils import type_rna_or_dna, transcribe, reverse_transcription, has_start_codon, reverse, complement, reverse_complement, is_palindrome + def filter_dna(seqs: Dict[str, Tuple[str, str]], gc_bounds: Union[Tuple[int, int], int] = (0, 100), @@ -96,3 +98,48 @@ def run_amino_analyzer(sequence: str, procedure: str, *, weight_type: str = 'ave elif procedure == 'sulphur_containing_aa_counter': result = sulphur_containing_aa_counter(sequence) return result + + +def run_dna_rna_tools(seq: str, *args: Union[str, Tuple[str, ...]]) -> Union[str, List[str]]: + """ + Run various DNA and RNA sequence operations. + + Args: + seq (str): The input DNA or RNA sequence. + *args (Union[str, Tuple[str, ...]]): Additional sequences or options. + If the last argument is a string, it specifies the operation to perform. + If the last argument is 'transcribe', 'reverse_transcription', or 'has_start_codon', the input sequence(s) must be RNA. + Otherwise, the input sequence(s) must be DNA. + + Returns: + Union[str, List[str]]: The result of the specified operation(s). + If a single operation is performed, the result is a string. + If multiple operations are performed, the result is a list of strings. + """ + procedure = args[len(args)-1] + seqs = list((seq,)+args[:-1]) + dna_or_rna = type_rna_or_dna(seqs) + new_seq = [] + + operation_map = { + 'transcribe': transcribe, + 'reverse_transcription': reverse_transcription, + 'has_start_codon': has_start_codon, + 'reverse': reverse, + 'complement': complement, + 'reverse_complement': reverse_complement, + 'is_palindrome': is_palindrome, + } + + if procedure not in operation_map: + raise ValueError("Invalid procedure. Check your sequences and try again.") + if (procedure in ('transcribe')) and (dna_or_rna == 'RNA'): + raise ValueError("This procedure is only for DNA sequences. Check your sequences and try again.") + elif (procedure in ('reverse_transcription', 'has_start_codon')) and (dna_or_rna == 'DNA'): + raise ValueError("This procedure is only for RNA sequences. Check your sequences and try again.") + + print(f"Hi! Here is your {procedure} for all your {dna_or_rna} sequences") + + operation_func = operation_map[procedure] + new_seq = [operation_func(i) for i in seqs] + return new_seq[0] if len(new_seq) == 1 else new_seq From 40b9e869a62709ab0f16bba5b236fc7bcd6ab980 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 7 Oct 2023 20:20:05 +0300 Subject: [PATCH 30/64] Update README.md --- README.md | 278 +++++++++++++++++++++++++++++++++++++++++++++++++++++- 1 file changed, 277 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 35e48c3..0b309a7 100644 --- a/README.md +++ b/README.md @@ -1 +1,277 @@ -# gene_code_tools \ No newline at end of file +![image](https://github.com/CaptnClementine/gene_code_tools/assets/131146976/68f2999b-5b6e-4668-9865-fae0d4e0b778) +# gene_code_tools + + +`gene_code_tools` is a collection of Python functions for working with DNA, RNA, and protein sequences. It provides utility functions to check and manipulate sequences based on various criteria. + +In the main file **gene_code_main_operations** you can find 3 most important functions**:** + +- [ ] filter_dna + - Filter a dictionary of FASTQ sequences based on various criteria. +- [ ] run_amino_analyzer + - Perform basic protein analytics. +- [ ] run_dna_rna_tools + - Conduct fundamental analytics on RNA and DNA sequences. + +| Function | Description | Returns | Arguments | +| --- | --- | --- | --- | +| filter_dna | Filter FASTQ sequences based on criteria like GC content, length, and quality. | Filtered sequences (dict) | seqs (dict), gc_bounds (tuple or int), length_bounds (tuple or int, optional), quality_threshold (int, optional) | +| run_amino_analyzer | Perform various protein sequence operations. | Result of specified operation(s) | seq (str), args (Union[str, Tuple[str, ...]]) | +| run_dna_rna_tools | Perform DNA and RNA sequence operations. | Result of specified operation(s) | seq (str), args (Union[str, Tuple[str, ...]]) | + +Here's more detailed information and examples for each function: + +## function filter_dna + +### Features + +- [ ] Check if a sequence consists only of DNA characters. +- [ ] Calculate the GC content percentage of a DNA sequence. +- [ ] Check if a DNA sequence falls within specified GC content bounds. +- [ ] Check if a DNA sequence falls within specified length bounds. +- [ ] Check if the average quality score of a sequence exceeds a threshold. + +### Usage + +Here's an example of how to use the functions provided by `gene_code_tools`: + +```python +from gene_code_utils.filter_dna_utils import filter_dna + +# Create a dictionary of FASTQ sequences +seqs = { + 'sequence1': ('AGCTAGCTAGCT', '!@#$!@#$!@#$'), + 'sequence2': ('TATATATATATA', 'abcdefghi'), + # Add more sequences as needed +} + +# Specify your filtering criteria +gc_bounds = (20, 80) # GC content bounds +length_bounds = (50, 100) # Sequence length bounds +quality_threshold = 30 # Quality threshold + +# Filter the sequences based on the criteria +filtered_seqs = filter_dna(seqs, gc_bounds, length_bounds, quality_threshold) + +# Use the filtered sequences as needed +print(filtered_seqs) +``` + +### Common Errors + +When using Gene Code Tools, you might encounter common errors such as invalid input values or incorrect sequence formats. Here are some typical errors and how to handle them: + +1. **Invalid gc_bounds or length_bounds**: Ensure that the bounds provided are valid tuples with two non-negative values or a single non-negative integer. For example, `gc_bounds=(20, 80)` is valid, and `gc_bounds=44.4` sets an upper GC content limit of 44.4%. Make sure that upper bounds are greater than lower bounds. +2. **Invalid quality_threshold**: The `quality_threshold` should be an integer between 0 and 42 (inclusive). +3. **Invalid sequence characters**: When working with DNA sequences, make sure that the input sequences contain only valid DNA characters (A, T, G, C, a, t, g, c). + +### Specified Variables and Parameters + +Gene Code Tools provides the following specified variables and parameters: + +- `seqs` (dict): A dictionary containing FASTQ sequences. +- `gc_bounds` (tuple or int): GC content filtering bounds. +- `length_bounds` (tuple or int, optional): Length filtering bounds. +- `quality_threshold` (int, optional): Quality threshold for filtering sequences. + +### Examples + +Here are some examples of how to use Gene Code Tools: + +```python +# Example 1: Filtering DNA sequences +filtered_seqs = filter_dna(seqs, gc_bounds=(20, 80), length_bounds=50, quality_threshold=30) + +# Example 2: Using a single upper bound for GC content +filtered_seqs = filter_dna(seqs, gc_bounds=44.4, length_bounds=(10, 100)) + +# Example 3: Using a single upper bound for sequence length +filtered_seqs = filter_dna(seqs, gc_bounds=(20, 80), length_bounds=1000) + +# Example 4: Filtering without specifying bounds +filtered_seqs = filter_dna(seqs) +``` + +## function run_amino_analyzer + +### **Features** + +- [ ] Transcribe DNA sequences into RNA. +- [ ] Reverse transcribe RNA sequences into DNA. +- [ ] Check for the presence of a start codon in RNA sequences. +- [ ] Reverse sequences. +- [ ] Find the complement of DNA or RNA sequences. +- [ ] Find the reverse complement of DNA or RNA sequences. +- [ ] Check if a sequence is a palindrome. +- [ ] Determine the type of RNA or DNA sequences (DNA, RNA, or mixed). + +### **Usage** + +### **Main Function: `run_dna_rna_tools`** + +The **`run_dna_rna_tools`** function is the main entry point for performing various DNA and RNA sequence operations. It takes a sequence and an optional set of additional arguments to specify the operation to perform. + +```python +pythonCopy code +from gene_code_utils import run_dna_rna_tools + +# Example 1: Transcribe DNA to RNA +result = run_dna_rna_tools("ATGC", "transcribe") +print(result) # Output: "AUGC" + +# Example 2: Reverse RNA sequence +result = run_dna_rna_tools("AUGC", "reverse") +print(result) # Output: "CGUA" + +``` + +### Arguments + +- **`seq (str)`**: The input DNA or RNA sequence. +- **`args (Union[str, Tuple[str, ...]])`**: Additional sequences or options. If the last argument is a string, it specifies the operation to perform. + +### Supported Operations + +- **`transcribe`**: Transcribe a DNA sequence into RNA. +- **`reverse_transcription`**: Reverse transcribe an RNA sequence into DNA. +- **`has_start_codon`**: Check if an RNA sequence has a start codon. +- **`reverse`**: Reverse a sequence. +- **`complement`**: Find the complement of a DNA or RNA sequence. +- **`reverse_complement`**: Find the reverse complement of a DNA or RNA sequence. +- **`is_palindrome`**: Check if a sequence is a palindrome. + +### **Gene Code Utilities (`gene_code_utils.py`)** + +The **`gene_code_utils.py`** module contains the core functions used by the main function. It includes the following functions: + +- **`is_dna(seq: str) -> bool`**: Check if a sequence is DNA. +- **`is_rna(seq: str) -> bool`**: Check if a sequence is RNA. +- **`transcribe(seq: str) -> str`**: Transcribe a DNA sequence into RNA. +- **`reverse(seq: str) -> str`**: Reverse a sequence. +- **`complement(seq: str) -> str`**: Find the complement of a DNA or RNA sequence. +- **`reverse_complement(seq: str) -> str`**: Find the reverse complement of a DNA or RNA sequence. +- **`reverse_transcription(seq: str) -> str`**: Perform reverse transcription on an RNA sequence. +- **`is_palindrome(seq: str) -> bool`**: Check if a sequence is a palindrome. +- **`has_start_codon(seq: str) -> Union[bool, str]`**: Check if an RNA sequence has a start codon. +- **`type_rna_or_dna(seqs: List[str]) -> str`**: Determine the type of RNA or DNA from a list of sequences. + +You can use these functions directly if needed. + +### **Common Errors** + +- **Invalid Procedure**: If you specify an invalid operation, you will receive a "Invalid procedure. Check your sequences and try again." error. +- **Sequence Type Mismatch**: If you try to perform an operation on the wrong sequence type (e.g., transcribing a DNA sequence), you will receive a type-specific error message. +- **Unsupported Sequences**: If your sequences contain characters other than A, T, G, C, U, a, t, g, c, u, you will receive a "Input sequence must be DNA or RNA." error. + +### **Specified Variables and Parameters** + +- **`seq (str)`**: The input DNA or RNA sequence. +- **`args (Union[str, Tuple[str, ...]])`**: Additional sequences or options. +- **`procedure (str)`**: The specified operation to perform. +- **`seqs (List[str])`**: List of sequences to operate on. +- **`dna_or_rna (str)`**: Indicates whether the sequences are DNA, RNA, or mixed. +- **`new_RNA (List[str])`**: List to store the results of operations. + +### **Example** + +```python +pythonCopy code +from gene_code_utils import run_dna_rna_tools + +# Transcribe DNA to RNA and find the reverse complement +result = run_dna_rna_tools("ATGC", "transcribe", "reverse_complement") +print(result) # Output: "GCAT" + +``` + +## function run_dna_rna_tools + +**Features** + +- [ ] Transcribe DNA sequences into RNA. +- [ ] Reverse transcribe RNA sequences into DNA. +- [ ] Check for the presence of a start codon in RNA sequences. +- [ ] Reverse sequences. +- [ ] Find the complement of DNA or RNA sequences. +- [ ] Find the reverse complement of DNA or RNA sequences. +- [ ] Check if a sequence is a palindrome. +- [ ] Determine the type of RNA or DNA sequences (DNA, RNA, or mixed). + +## **Usage** + +### **Main Function: `run_dna_rna_tools`** + +The **`run_dna_rna_tools`** function is the main entry point for performing various DNA and RNA sequence operations. It takes a sequence and an optional set of additional arguments to specify the operation to perform. + +```python +pythonCopy code +from dna_rna_tools_utils import run_dna_rna_tools + +# Example 1: Transcribe DNA to RNA +result = run_dna_rna_tools("ATGC", "transcribe") +print(result) # Output: "AUGC" + +# Example 2: Reverse RNA sequence +result = run_dna_rna_tools("AUGC", "reverse") +print(result) # Output: "CGUA" + +``` + +### Arguments + +- **`seq (str)`**: The input DNA or RNA sequence. +- **`args (Union[str, Tuple[str, ...]])`**: Additional sequences or options. If the last argument is a string, it specifies the operation to perform. + +### Supported Operations + +- **`transcribe`**: Transcribe a DNA sequence into RNA. +- **`reverse_transcription`**: Reverse transcribe an RNA sequence into DNA. +- **`has_start_codon`**: Check if an RNA sequence has a start codon. +- **`reverse`**: Reverse a sequence. +- **`complement`**: Find the complement of a DNA or RNA sequence. +- **`reverse_complement`**: Find the reverse complement of a DNA or RNA sequence. +- **`is_palindrome`**: Check if a sequence is a palindrome. + +### **Gene Code Utilities (`dna_rna_tools_utils.py`)** + +The **`dna_rna_tools_utils.py`** module contains the core functions used by the main function. It includes the following functions: + +- **`is_dna(seq: str) -> bool`**: Check if a sequence is DNA. +- **`is_rna(seq: str) -> bool`**: Check if a sequence is RNA. +- **`transcribe(seq: str) -> str`**: Transcribe a DNA sequence into RNA. +- **`reverse(seq: str) -> str`**: Reverse a sequence. +- **`complement(seq: str) -> str`**: Find the complement of a DNA or RNA sequence. +- **`reverse_complement(seq: str) -> str`**: Find the reverse complement of a DNA or RNA sequence. +- **`reverse_transcription(seq: str) -> str`**: Perform reverse transcription on an RNA sequence. +- **`is_palindrome(seq: str) -> bool`**: Check if a sequence is a palindrome. +- **`has_start_codon(seq: str) -> Union[bool, str]`**: Check if an RNA sequence has a start codon. +- **`type_rna_or_dna(seqs: List[str]) -> str`**: Determine the type of RNA or DNA from a list of sequences. + +You can use these functions directly if needed. + +## **Common Errors** + +- **Invalid Procedure**: If you specify an invalid operation, you will receive an "Invalid procedure. Check your sequences and try again." error. +- **Sequence Type Mismatch**: If you try to perform an operation on the wrong sequence type (e.g., transcribing a DNA sequence), you will receive a type-specific error message. +- **Unsupported Sequences**: If your sequences contain characters other than A, T, G, C, U, a, t, g, c, u, you will receive an "Input sequence must be DNA or RNA." error. + +## **Specified Variables and Parameters** + +- **`seq (str)`**: The input DNA or RNA sequence. +- **`args (Union[str, Tuple[str, ...]])`**: Additional sequences or options. +- **`procedure (str)`**: The specified operation to perform. +- **`seqs (List[str])`**: List of sequences to operate on. +- **`dna_or_rna (str)`**: Indicates whether the sequences are DNA, RNA, or mixed. +- **`new_seq (List[str])`**: List to store the results of operations. + +## **Example** + +```python +pythonCopy code +from dna_rna_tools_utils import run_dna_rna_tools + +# Transcribe DNA to RNA and find the reverse complement +result = run_dna_rna_tools("ATGC", "transcribe", "reverse_complement") +print(result) # Output: "GCAT" + +``` From 94751f3a35920fa434bb7a95b6fb3fa430d5ede5 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sun, 8 Oct 2023 10:05:18 +0300 Subject: [PATCH 31/64] Correct bounds in 'filter_dna' function --- gene_code_main_operations | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gene_code_main_operations b/gene_code_main_operations index cfcf3bc..cb92b8e 100644 --- a/gene_code_main_operations +++ b/gene_code_main_operations @@ -32,7 +32,7 @@ def filter_dna(seqs: Dict[str, Tuple[str, str]], gc_bounds: Union[Tuple[int, int Example: filtered_seqs = filtr_dna(seqs, gc_bounds=(20, 80), length_bounds=50, quality_threshold=30) - - here gc_bounds interval will be [20, 80) and length_bounds will be [0, 50]. + - here gc_bounds interval will be [20, 80] and length_bounds will be [0, 50]. quality_threshold will be 30 <= sequence score Warnings: If you prefer @@ -42,9 +42,9 @@ def filter_dna(seqs: Dict[str, Tuple[str, str]], gc_bounds: Union[Tuple[int, int for fastq_name, (seq, quality) in seqs.items(): if is_dna(seq): if type(gc_bounds) == int: - gc_bounds = (0, gc_bounds + 1) + gc_bounds = (0, gc_bounds) if type(length_bounds) == int: - length_bounds = (0, length_bounds + 1) + length_bounds = (0, length_bounds) if is_in_gc_bounds(gc_bounds, seq) and is_in_length_bounds(length_bounds, seq) and check_quality(quality_threshold, quality): filtered_seqs[fastq_name] = (seq, quality) From 6172210fd8762685b1f0367268790814de5bf5e2 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sun, 8 Oct 2023 10:06:24 +0300 Subject: [PATCH 32/64] Correct bounds in GC and length filter functions --- gene_code_utils/filter_dna_utils.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gene_code_utils/filter_dna_utils.py b/gene_code_utils/filter_dna_utils.py index 7eb2992..05d19af 100644 --- a/gene_code_utils/filter_dna_utils.py +++ b/gene_code_utils/filter_dna_utils.py @@ -48,7 +48,7 @@ def is_in_gc_bounds(bounds: tuple, dna: str) -> bool: raise ValueError("Invalid gc_bounds. Each value must be greater than zero.") if upper_bound == lower_bound: upper_bound += 1 - return lower_bound <= gc_content < upper_bound + return lower_bound <= gc_content <= upper_bound def is_in_length_bounds(bounds: tuple, dna: str) -> bool: @@ -69,7 +69,7 @@ def is_in_length_bounds(bounds: tuple, dna: str) -> bool: raise ValueError("Invalid length_bounds. Each value must be greater than zero.") if upper_bound == lower_bound: upper_bound += 1 - return lower_bound <= dna_length < upper_bound + return lower_bound <= dna_length <= upper_bound def check_quality(quality_threshold: int, quality: str) -> bool: From f412a0474a3710f2e84512182f39a691c8c69e4a Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sun, 8 Oct 2023 10:09:45 +0300 Subject: [PATCH 33/64] Update README.md to correct bounds descrition in 'filter_dna' function --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 0b309a7..5d62888 100644 --- a/README.md +++ b/README.md @@ -61,7 +61,7 @@ print(filtered_seqs) When using Gene Code Tools, you might encounter common errors such as invalid input values or incorrect sequence formats. Here are some typical errors and how to handle them: -1. **Invalid gc_bounds or length_bounds**: Ensure that the bounds provided are valid tuples with two non-negative values or a single non-negative integer. For example, `gc_bounds=(20, 80)` is valid, and `gc_bounds=44.4` sets an upper GC content limit of 44.4%. Make sure that upper bounds are greater than lower bounds. +1. **Invalid gc_bounds or length_bounds**: Ensure that the bounds provided are valid tuples with two non-negative values or a single non-negative integer. For example, `gc_bounds=(20, 80)` is valid, and `gc_bounds=44.4` sets an upper GC content limit of 44.4%. All bounds inclusive 2. **Invalid quality_threshold**: The `quality_threshold` should be an integer between 0 and 42 (inclusive). 3. **Invalid sequence characters**: When working with DNA sequences, make sure that the input sequences contain only valid DNA characters (A, T, G, C, a, t, g, c). From a06d1179c989867f83006eb876368bd745c64c04 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sun, 8 Oct 2023 10:33:10 +0300 Subject: [PATCH 34/64] Update README.md --- README.md | 144 +++++++++++++++++++++++++++++------------------------- 1 file changed, 78 insertions(+), 66 deletions(-) diff --git a/README.md b/README.md index 5d62888..a38f13a 100644 --- a/README.md +++ b/README.md @@ -19,9 +19,11 @@ In the main file **gene_code_main_operations** you can find 3 most important fun | run_amino_analyzer | Perform various protein sequence operations. | Result of specified operation(s) | seq (str), args (Union[str, Tuple[str, ...]]) | | run_dna_rna_tools | Perform DNA and RNA sequence operations. | Result of specified operation(s) | seq (str), args (Union[str, Tuple[str, ...]]) | +This README is a long one! If you want just try one function -> Ctrl+F and search for Usage paragraph 💜 + Here's more detailed information and examples for each function: -## function filter_dna +## ⭐ function filter_dna ### Features @@ -36,8 +38,6 @@ Here's more detailed information and examples for each function: Here's an example of how to use the functions provided by `gene_code_tools`: ```python -from gene_code_utils.filter_dna_utils import filter_dna - # Create a dictionary of FASTQ sequences seqs = { 'sequence1': ('AGCTAGCTAGCT', '!@#$!@#$!@#$'), @@ -46,8 +46,8 @@ seqs = { } # Specify your filtering criteria -gc_bounds = (20, 80) # GC content bounds -length_bounds = (50, 100) # Sequence length bounds +gc_bounds = (0, 80) # GC content bounds +length_bounds = 100 # Sequence length bounds quality_threshold = 30 # Quality threshold # Filter the sequences based on the criteria @@ -92,7 +92,7 @@ filtered_seqs = filter_dna(seqs, gc_bounds=(20, 80), length_bounds=1000) filtered_seqs = filter_dna(seqs) ``` -## function run_amino_analyzer +## ⭐ function run_amino_analyzer ### **Features** @@ -105,86 +105,98 @@ filtered_seqs = filter_dna(seqs) - [ ] Check if a sequence is a palindrome. - [ ] Determine the type of RNA or DNA sequences (DNA, RNA, or mixed). -### **Usage** +## Usage -### **Main Function: `run_dna_rna_tools`** - -The **`run_dna_rna_tools`** function is the main entry point for performing various DNA and RNA sequence operations. It takes a sequence and an optional set of additional arguments to specify the operation to perform. +To run amino_analyzer tool you need to use the function ***run_amino_analyzer*** with the following arguments: ```python -pythonCopy code -from gene_code_utils import run_dna_rna_tools - -# Example 1: Transcribe DNA to RNA -result = run_dna_rna_tools("ATGC", "transcribe") -print(result) # Output: "AUGC" +from amino_analyzer import run_amino_analyzer +run_amino_analyzer(sequence, procedure, *, weight_type = 'average', enzyme: str = 'trypsine')` +``` -# Example 2: Reverse RNA sequence -result = run_dna_rna_tools("AUGC", "reverse") -print(result) # Output: "CGUA" +- `sequence (str):` The input protein sequence in one-letter code. +- `procedure (str):` The procedure to perform over your protein sequence. +- `weight_type: str = 'average':` default argument for `aa_weight` function. `weight_type = 'monoisotopic'` can be used as another option. +- `enzyme: str = 'trypsine':` default argument for `peptide_cutter` function. `enzyme = 'chymotrypsin'` can be used as another option + + +**Available procedures list** +- `aa_weight` — calculates the amino acids weight in a protein sequence. +- `count_hydroaffinity` — counts the quantity of hydrophobic and hydrophilic amino acids in a protein sequence. +- `peptide_cutter` — identifies cleavage sites in a given peptide sequence using a specified enzyme (trypsine or chymotripsine). +- `one_to_three_letter_code` — converts a protein sequence from one-letter amino acid code to three-letter code. +- `sulphur_containing_aa_counter` - counts sulphur-containing amino acids in a protein sequence. + +You can also use each function separately by importing them in advance. + +## Examples +To calculate protein molecular weight: +```python +run_amino_analyzer("VLSPADKTNVKAAW", "aa_weight") # Output: 1481.715 +run_amino_analyzer("VLSPADKTNVKAAW", "aa_weight", weight_type = 'monoisotopic') # Output: 1480.804 ``` -### Arguments - -- **`seq (str)`**: The input DNA or RNA sequence. -- **`args (Union[str, Tuple[str, ...]])`**: Additional sequences or options. If the last argument is a string, it specifies the operation to perform. +To count hydroaffinity: +```python +run_amino_analyzer("VLSPADKTNVKAAW", "count_hydroaffinity") # Output: (8, 6) +``` -### Supported Operations +To find trypsin/chymotripsine clivage sites: +```python +run_amino_analyzer("VLSPADKTNVKAAW", "peptide_cutter") # Output: 'Found 2 trypsin cleavage sites at positions 7, 11' -- **`transcribe`**: Transcribe a DNA sequence into RNA. -- **`reverse_transcription`**: Reverse transcribe an RNA sequence into DNA. -- **`has_start_codon`**: Check if an RNA sequence has a start codon. -- **`reverse`**: Reverse a sequence. -- **`complement`**: Find the complement of a DNA or RNA sequence. -- **`reverse_complement`**: Find the reverse complement of a DNA or RNA sequence. -- **`is_palindrome`**: Check if a sequence is a palindrome. +run_amino_analyzer("VLSPADKTNVKAAWW", "peptide_cutter", enzyme = 'chymotrypsin') # Output: 'Found 1 chymotrypsin cleavage sites at positions 14' +``` -### **Gene Code Utilities (`gene_code_utils.py`)** +To change to 3-letter code and count sulphur-containing amino acids. +```python +run_amino_analyzer("VLSPADKTNVKAAW", "one_to_three_letter_code") # Output: 'ValLeuSerProAlaAspLysThrAsnValLysAlaAlaTrp' -The **`gene_code_utils.py`** module contains the core functions used by the main function. It includes the following functions: +run_amino_analyzer("VLSPADKTNVKAAWM", "sulphur_containing_aa_counter") # Output: The number of sulphur-containing amino acids in the sequence is equal to 1 +``` -- **`is_dna(seq: str) -> bool`**: Check if a sequence is DNA. -- **`is_rna(seq: str) -> bool`**: Check if a sequence is RNA. -- **`transcribe(seq: str) -> str`**: Transcribe a DNA sequence into RNA. -- **`reverse(seq: str) -> str`**: Reverse a sequence. -- **`complement(seq: str) -> str`**: Find the complement of a DNA or RNA sequence. -- **`reverse_complement(seq: str) -> str`**: Find the reverse complement of a DNA or RNA sequence. -- **`reverse_transcription(seq: str) -> str`**: Perform reverse transcription on an RNA sequence. -- **`is_palindrome(seq: str) -> bool`**: Check if a sequence is a palindrome. -- **`has_start_codon(seq: str) -> Union[bool, str]`**: Check if an RNA sequence has a start codon. -- **`type_rna_or_dna(seqs: List[str]) -> str`**: Determine the type of RNA or DNA from a list of sequences. +## Common Errors +Here are some common issues you can come ascross while using the amino-analyzer tool and their possible solutions: -You can use these functions directly if needed. +1. **ValueError: Incorrect procedure** + If you receive this error, it means that you provided an incorrect procedure when calling `run_amino_analyzer`. Make sure you choose one of the following procedures: `aa_weight`, `count_hydroaffinity`, `peptide_cutter`, `one_to_three_letter_code`, or `sulphur_containing_aa_counter`. -### **Common Errors** + Example: + ```python + run_amino_analyzer("VLSPADKTNVKAAW", "incorrect_procedure") + # Output: ValueError: Incorrect procedure. Acceptable procedures: aa_weight, count_hydroaffinity, peptide_cutter, one_to_three_letter_code, sulphur_containing_aa_counter + ``` -- **Invalid Procedure**: If you specify an invalid operation, you will receive a "Invalid procedure. Check your sequences and try again." error. -- **Sequence Type Mismatch**: If you try to perform an operation on the wrong sequence type (e.g., transcribing a DNA sequence), you will receive a type-specific error message. -- **Unsupported Sequences**: If your sequences contain characters other than A, T, G, C, U, a, t, g, c, u, you will receive a "Input sequence must be DNA or RNA." error. +2. **ValueError: Incorrect sequence** +This error occurs if the input sequence provided to run_amino_analyzer contains characters that are not valid amino acids. Make sure your sequence only contains valid amino acid characters (V, I, L, E, Q, D, N, H, W, F, Y, R, K, S, T, M, A, G, P, C, v, i, l, e, q, d, n, h, w, f, y, r, k, s, t, m, a, g, p, c). -### **Specified Variables and Parameters** + Example: + ```python + run_amino_analyzer("VLSPADKTNVKAAW!", "aa_weight") + # Output: ValueError: Incorrect sequence. Only amino acids are allowed (V, I, L, E, Q, D, N, H, W, F, Y, R, K, S, T, M, A, G, P, C, v, i, l, e, q, d, n, h, w, f, y, r, k, s, t, m, a, g, p, c). + ``` -- **`seq (str)`**: The input DNA or RNA sequence. -- **`args (Union[str, Tuple[str, ...]])`**: Additional sequences or options. -- **`procedure (str)`**: The specified operation to perform. -- **`seqs (List[str])`**: List of sequences to operate on. -- **`dna_or_rna (str)`**: Indicates whether the sequences are DNA, RNA, or mixed. -- **`new_RNA (List[str])`**: List to store the results of operations. +3. **ValueError: You have chosen an enzyme that is not provided** +This error occurs if you provide an enzyme other than "trypsin" or "chymotrypsin" when calling peptide_cutter. Make sure to use one of the specified enzymes. -### **Example** + Example: + ```python + peptide_cutter("VLSPADKTNVKAAW", "unknown_enzyme") + # Output: You have chosen an enzyme that is not provided. Please choose between trypsin and chymotrypsin. + ``` +4. **ValueError: You have chosen an enzyme that is not provided.** +If you encounter this error, it means that you're trying to iterate over a float value. Ensure that you're using the correct function and passing the correct arguments. -```python -pythonCopy code -from gene_code_utils import run_dna_rna_tools + Example: + ```python + result = count_hydroaffinity(123) + # Output: TypeError: 'int' object is not iterable + ``` -# Transcribe DNA to RNA and find the reverse complement -result = run_dna_rna_tools("ATGC", "transcribe", "reverse_complement") -print(result) # Output: "GCAT" -``` -## function run_dna_rna_tools +## ⭐ function run_dna_rna_tools **Features** @@ -204,7 +216,6 @@ print(result) # Output: "GCAT" The **`run_dna_rna_tools`** function is the main entry point for performing various DNA and RNA sequence operations. It takes a sequence and an optional set of additional arguments to specify the operation to perform. ```python -pythonCopy code from dna_rna_tools_utils import run_dna_rna_tools # Example 1: Transcribe DNA to RNA @@ -267,7 +278,6 @@ You can use these functions directly if needed. ## **Example** ```python -pythonCopy code from dna_rna_tools_utils import run_dna_rna_tools # Transcribe DNA to RNA and find the reverse complement @@ -275,3 +285,5 @@ result = run_dna_rna_tools("ATGC", "transcribe", "reverse_complement") print(result) # Output: "GCAT" ``` + +If you have any questions, suggestions, or encounter any issues while using the amino-analyzer tool, feel free to reach out [CaptnClementine](https://github.com/YourGitHubUsername) 💛 From 5f682c4919b37ec9e3e9b13a8decace509c246f1 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 14 Oct 2023 15:38:21 +0300 Subject: [PATCH 35/64] Add typing library --- gene_code_utils/dna_rna_tools_utils.py | 2 ++ 1 file changed, 2 insertions(+) diff --git a/gene_code_utils/dna_rna_tools_utils.py b/gene_code_utils/dna_rna_tools_utils.py index 06707cd..ac6db9c 100644 --- a/gene_code_utils/dna_rna_tools_utils.py +++ b/gene_code_utils/dna_rna_tools_utils.py @@ -1,3 +1,5 @@ +from typing import List, Union + DNA = set ('ATGCatgc') RNA = set ('AUGCaugc') TRANSCRIPTION_TABLE = { From 7c5ab39819f3ae85cd5f711d202ef65b85b93484 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Mon, 16 Oct 2023 21:37:10 +0300 Subject: [PATCH 36/64] Add 'read_fastq_file' to read fastq from file --- gene_code_utils/filter_dna_utils.py | 46 +++++++++++++++++++++++++++++ 1 file changed, 46 insertions(+) diff --git a/gene_code_utils/filter_dna_utils.py b/gene_code_utils/filter_dna_utils.py index 05d19af..a4e0e32 100644 --- a/gene_code_utils/filter_dna_utils.py +++ b/gene_code_utils/filter_dna_utils.py @@ -1,3 +1,49 @@ +from typing import Dict, Tuple + + +def read_fastq_file(input_path: str) -> Dict[str, Tuple[str, str, str]]: + """ + Read a FASTQ file and convert it into a dictionary. + + Args: + input_path (str): Path to the input FASTQ file. + + Returns: + fastq_dict (dict): A dictionary containing FASTQ sequences. + Key: Sequence name (string). + Value: Tuple of three strings (sequence, comment, quality). + """ + fastq_dict = {} + current_name = '' + current_seq = '' + current_comment = '' + current_quality = '' + line_counter = 1 + + with open(input_path, 'r') as file: + for line in file: + line = line.strip() + + if line_counter == 1: + current_name = line[1:] + line_counter += 1 + elif line_counter == 2: + current_seq = line + line_counter += 1 + elif line_counter == 3: + current_comment = line + line_counter += 1 + elif line_counter == 4: + current_quality = line + line_counter += 1 + + if line_counter == 5: + fastq_dict[current_name] = (current_seq, current_comment, current_quality) + line_counter = 1 + + return fastq_dict + + def is_dna(seq: str) -> bool: """ Check if the input sequence consists only of DNA characters. From c0f0e8249f5b3ca903d519798bb9af5e3f0aa426 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Mon, 16 Oct 2023 21:39:52 +0300 Subject: [PATCH 37/64] Add 'write_filtered_fastq' to write the file --- gene_code_utils/filter_dna_utils.py | 13 +++++++++++++ 1 file changed, 13 insertions(+) diff --git a/gene_code_utils/filter_dna_utils.py b/gene_code_utils/filter_dna_utils.py index a4e0e32..9518808 100644 --- a/gene_code_utils/filter_dna_utils.py +++ b/gene_code_utils/filter_dna_utils.py @@ -44,6 +44,19 @@ def read_fastq_file(input_path: str) -> Dict[str, Tuple[str, str, str]]: return fastq_dict +def write_filtered_fastq(filtered_seqs: Dict[str, Tuple[str, str, str]], output_filename: str): + """ + Write a FASTQ file + + Args: + filtered_seqs (dict): dict of FASTQ to write them in output + output_filename (str): Path to the output FASTQ file. By default, it is the same as the input name. + """ + with open(f'{output_filename}', 'w') as file: + for name, (seq, comment, quality) in filtered_seqs.items(): + file.write(f'@{name}_{seq}_{comment}_{quality}\n') + + def is_dna(seq: str) -> bool: """ Check if the input sequence consists only of DNA characters. From 5a984dfafa4f2e5b5f2be32831c4e698e9415aba Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Mon, 16 Oct 2023 21:43:30 +0300 Subject: [PATCH 38/64] Change 'filter_dna' to read-write fastq file --- gene_code_main_operations | 30 ++++++++++++++---------------- 1 file changed, 14 insertions(+), 16 deletions(-) diff --git a/gene_code_main_operations b/gene_code_main_operations index cb92b8e..d6cf98b 100644 --- a/gene_code_main_operations +++ b/gene_code_main_operations @@ -1,19 +1,17 @@ -from typing import Dict, Tuple, Union -from gene_code_utils.filter_dna_utils import is_dna, is_in_gc_bounds, is_in_length_bounds, check_quality -from gene_code_utils.amino_analyzer_utils import aa_weight, count_hydroaffinity, peptide_cutter, one_to_three_letter_code, sulphur_containing_aa_counter +from typing import Dict, Tuple, Union, List +from gene_code_utils.filter_dna_utils import is_dna, is_in_gc_bounds, is_in_length_bounds, check_quality, write_filtered_fastq, read_fastq_file +from gene_code_utils.amino_analyzer_utils import is_aa, aa_weight, count_hydroaffinity, peptide_cutter, one_to_three_letter_code, sulphur_containing_aa_counter from gene_code_utils.dna_rna_tools_utils import type_rna_or_dna, transcribe, reverse_transcription, has_start_codon, reverse, complement, reverse_complement, is_palindrome - -def filter_dna(seqs: Dict[str, Tuple[str, str]], gc_bounds: Union[Tuple[int, int], int] = (0, 100), +def filter_dna(input_path: str, output_filename: str = '', gc_bounds: Union[Tuple[int, int], int] = (0, 100), length_bounds: Union[Tuple[int, int], int] = (0, 2**32), quality_threshold: int = 0) -> Dict[str, Tuple[str, str]]: """ Filter and process a dictionary of FASTQ sequences based on specified criteria. Args: - seqs (dict): A dictionary containing FASTQ sequences. - Key: Sequence name (string). - Value: Tuple of two strings (sequence, quality). + input_path (str): Path to the input FASTQ file. Please write your path with directory etc. You can use os.path.join(dir_name, file_name) + output_filename (str): Name of the output FASTQ file (without the file extension). By default, it is the same as the input name. gc_bounds (tuple or int): GC content filtering bounds. If a tuple, it represents the lower and upper bounds (inclusive) for GC content as percentages. If an int, it represents the upper bound for GC content as a percentage. @@ -28,32 +26,32 @@ def filter_dna(seqs: Dict[str, Tuple[str, str]], gc_bounds: Union[Tuple[int, int Returns: filtered_seqs (dict): A dictionary containing filtered FASTQ sequences. Key: Sequence name (string). - Value: Tuple of two strings (sequence, quality). + Value: Tuple of two strings (sequence, comment, quality). Example: filtered_seqs = filtr_dna(seqs, gc_bounds=(20, 80), length_bounds=50, quality_threshold=30) - here gc_bounds interval will be [20, 80] and length_bounds will be [0, 50]. quality_threshold will be 30 <= sequence score - Warnings: If you prefer """ - + seqs = read_fastq_file(input_path) filtered_seqs = dict() - for fastq_name, (seq, quality) in seqs.items(): + for fastq_name, (seq, seq_comment, quality) in seqs.items(): if is_dna(seq): if type(gc_bounds) == int: gc_bounds = (0, gc_bounds) if type(length_bounds) == int: length_bounds = (0, length_bounds) if is_in_gc_bounds(gc_bounds, seq) and is_in_length_bounds(length_bounds, seq) and check_quality(quality_threshold, quality): - filtered_seqs[fastq_name] = (seq, quality) + filtered_seqs[fastq_name] = (seq,seq_comment, quality) + + if output_filename == '': + output_filename = input_path + write_filtered_fastq(filtered_seqs, output_filename) return filtered_seqs -from amino_analyzer_utils import aa_weight, count_hydroaffinity, peptide_cutter, one_to_three_letter_code, sulphur_containing_aa_counter - - def run_amino_analyzer(sequence: str, procedure: str, *, weight_type: str = 'average', enzyme: str = 'trypsin'): """ This is the main function to run the amino-analyzer.py tool. From 01c1dd51feabef6b9346ce49801809c7de43ebb6 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Mon, 16 Oct 2023 21:56:23 +0300 Subject: [PATCH 39/64] Add file-option description of 'filter_dna' --- README.md | 29 ++++++++++++++++------------- 1 file changed, 16 insertions(+), 13 deletions(-) diff --git a/README.md b/README.md index a38f13a..fd3ba37 100644 --- a/README.md +++ b/README.md @@ -7,7 +7,7 @@ In the main file **gene_code_main_operations** you can find 3 most important functions**:** - [ ] filter_dna - - Filter a dictionary of FASTQ sequences based on various criteria. + - Filter a file with dictionaries of FASTQ sequences based on various criteria. - [ ] run_amino_analyzer - Perform basic protein analytics. - [ ] run_dna_rna_tools @@ -15,7 +15,7 @@ In the main file **gene_code_main_operations** you can find 3 most important fun | Function | Description | Returns | Arguments | | --- | --- | --- | --- | -| filter_dna | Filter FASTQ sequences based on criteria like GC content, length, and quality. | Filtered sequences (dict) | seqs (dict), gc_bounds (tuple or int), length_bounds (tuple or int, optional), quality_threshold (int, optional) | +| filter_dna | Filter FASTQ sequences based on criteria like GC content, length, and quality. | Filtered sequences (file) | input_path (str), output_path (str), gc_bounds (tuple or int), length_bounds (tuple or int, optional), quality_threshold (int, optional) | | run_amino_analyzer | Perform various protein sequence operations. | Result of specified operation(s) | seq (str), args (Union[str, Tuple[str, ...]]) | | run_dna_rna_tools | Perform DNA and RNA sequence operations. | Result of specified operation(s) | seq (str), args (Union[str, Tuple[str, ...]]) | @@ -38,12 +38,13 @@ Here's more detailed information and examples for each function: Here's an example of how to use the functions provided by `gene_code_tools`: ```python -# Create a dictionary of FASTQ sequences -seqs = { - 'sequence1': ('AGCTAGCTAGCT', '!@#$!@#$!@#$'), - 'sequence2': ('TATATATATATA', 'abcdefghi'), +# Create a input_file of FASTQ sequences like this: +@SRX079804:1:SRR292678:1:1101:21885:21885 1:N:0:1 BH:ok +ACAGCAACATAAACATGATGGGATGGCGTAAGCCCCCGAGATATCAGTTTACCCAGGATAAGAGATTAAATTATGAGCAACATTATTAA ++SRX079804:1:SRR292678:1:1101:21885:21885 1:N:0:1 BH:ok +FGGGFGGGFGGGFGDFGCEBB@CCDFDDFFFFBFFGFGEFDFFFF;D@DD>C@DDGGGDFGDGG?GFGFEGFGGEF@FDGGGFGFBGGD # Add more sequences as needed -} + # Specify your filtering criteria gc_bounds = (0, 80) # GC content bounds @@ -51,7 +52,7 @@ length_bounds = 100 # Sequence length bounds quality_threshold = 30 # Quality threshold # Filter the sequences based on the criteria -filtered_seqs = filter_dna(seqs, gc_bounds, length_bounds, quality_threshold) +filtered_seqs = filter_dna(input_file_name, output_file_name, gc_bounds, length_bounds, quality_threshold) # Use the filtered sequences as needed print(filtered_seqs) @@ -69,7 +70,9 @@ When using Gene Code Tools, you might encounter common errors such as invalid in Gene Code Tools provides the following specified variables and parameters: -- `seqs` (dict): A dictionary containing FASTQ sequences. +- input_path (str): Path to the input FASTQ file. Please write your path with directory etc. You can use os.path.join(dir_name, file_name) +- output_filename (str): Name of the output FASTQ file (without the file extension). By default, it is the same as the input name. + - `gc_bounds` (tuple or int): GC content filtering bounds. - `length_bounds` (tuple or int, optional): Length filtering bounds. - `quality_threshold` (int, optional): Quality threshold for filtering sequences. @@ -80,16 +83,16 @@ Here are some examples of how to use Gene Code Tools: ```python # Example 1: Filtering DNA sequences -filtered_seqs = filter_dna(seqs, gc_bounds=(20, 80), length_bounds=50, quality_threshold=30) +filtered_seqs = filter_dna(seqs_file, gc_bounds=(20, 80), length_bounds=50, quality_threshold=30) # Example 2: Using a single upper bound for GC content -filtered_seqs = filter_dna(seqs, gc_bounds=44.4, length_bounds=(10, 100)) +filtered_seqs = filter_dna(seqs_file, gc_bounds=44.4, length_bounds=(10, 100)) # Example 3: Using a single upper bound for sequence length -filtered_seqs = filter_dna(seqs, gc_bounds=(20, 80), length_bounds=1000) +filtered_seqs = filter_dna(seqs_file, gc_bounds=(20, 80), length_bounds=1000) # Example 4: Filtering without specifying bounds -filtered_seqs = filter_dna(seqs) +filtered_seqs = filter_dna(seqs_file) ``` ## ⭐ function run_amino_analyzer From 54de4ee721327028a31a3c5926588fff0c5ae10b Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Mon, 16 Oct 2023 22:14:47 +0300 Subject: [PATCH 40/64] Create bio_files_processor.py and the directory for it --- dir_bio_files_processor/bio_files_processor.py | 1 + 1 file changed, 1 insertion(+) create mode 100644 dir_bio_files_processor/bio_files_processor.py diff --git a/dir_bio_files_processor/bio_files_processor.py b/dir_bio_files_processor/bio_files_processor.py new file mode 100644 index 0000000..8b13789 --- /dev/null +++ b/dir_bio_files_processor/bio_files_processor.py @@ -0,0 +1 @@ + From 3ef1ba81c0baee7111bf96e470445fcfde8a0325 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Mon, 16 Oct 2023 22:15:32 +0300 Subject: [PATCH 41/64] Add 'convert_multiline_fasta_to_oneline' function --- .../bio_files_processor.py | 32 +++++++++++++++++++ 1 file changed, 32 insertions(+) diff --git a/dir_bio_files_processor/bio_files_processor.py b/dir_bio_files_processor/bio_files_processor.py index 8b13789..18eda5e 100644 --- a/dir_bio_files_processor/bio_files_processor.py +++ b/dir_bio_files_processor/bio_files_processor.py @@ -1 +1,33 @@ +def convert_multiline_fasta_to_oneline(input_fasta, output_fasta = 'output_auto.fasta'): + """ + Convert a multiline FASTA file into a one-line FASTA format and save it to a new file. + + Args: + input_fasta (str): The path to the input FASTA file. + output_fasta (str, optional): The path to the output FASTA file. If not provided, the output + file name will be generated based on the input file name with '.fasta' extension. + + Returns: + None + + Reads the input FASTA file, which can contain sequences split across multiple lines, and saves it + to a new FASTA file where each sequence is on a single line. The output file will be created + with the name provided in the output_fasta argument or generated based on the input file name. + + The function retains the header lines starting with '>' and removes any line breaks within the + sequence. + """ + with open(input_fasta) as fasta_file: + output_list = [] + s = '' + for line in fasta_file: + if '>' in line: + output_list.append(s[:-1]) + s = '' + output_list.append(line[:-1]) + else: + s += line[:-1] + output_list.append(s[:-1]) + with open(output_fasta,'w') as fasta_file: + f.write("\n".join(output_list[1:])) From 777f05b44bbeef93311c42bbff0af5725bea096b Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Mon, 16 Oct 2023 23:44:33 +0300 Subject: [PATCH 42/64] Add 'select_genes_from_gbk_to_fasta' function --- .../bio_files_processor.py | 86 +++++++++++++++++-- 1 file changed, 79 insertions(+), 7 deletions(-) diff --git a/dir_bio_files_processor/bio_files_processor.py b/dir_bio_files_processor/bio_files_processor.py index 18eda5e..61b79db 100644 --- a/dir_bio_files_processor/bio_files_processor.py +++ b/dir_bio_files_processor/bio_files_processor.py @@ -1,4 +1,75 @@ -def convert_multiline_fasta_to_oneline(input_fasta, output_fasta = 'output_auto.fasta'): +from collections import deque + + +def select_genes_from_gbk_to_fasta(input_gbk: str, genes: list, n_before: int, n_after: int, output_fasta: str = 'output_auto.fasta') -> None: + """ + Select specific genes from a GenBank (GBK) file, extract their genetic information, and save it as a FASTA format file. + + Args: + input_gbk (str): The path to the input GenBank file. + genes (list of str): A list of gene names to extract from the GenBank file. + n_before (int): The number of sequences to include before the selected gene. + n_after (int): The number of sequences to include after the selected gene. + output_fasta (str, optional): The name of the output FASTA file. If not provided, it will be generated based on the gene name. + + Returns: + None + + This function reads the input GenBank file, extracts CDS sequences, and selects specific genes. The selected sequences, along with surrounding context sequences, are saved as FASTA format files. Output files are named based on the gene name. + + The number of sequences before and after the selected gene is specified by n_before and n_after. + + """ + with open(input_gbk) as gbk_file: + output_list = [] + read_line = [] + translation = '' + translation_flag = 0 + for line in gbk_file: + if 'CDS ' in line: + read_line.append(translation) + output_list.append(read_line) + read_line = [] + translation = '' + translation_flag = 0 + elif 'gene=' in line: + read_line.append(line.strip()) + elif 'translation=' in line: + if '"\n' in line: + translation += line.strip() + else: + translation_flag = 1 + translation += line.strip() + elif '"' not in line and translation_flag == 1: + translation += line.strip() + elif '"' in line and translation_flag == 1: + translation += line.strip() + translation_flag = 0 + read_line.append(translation) + output_list.append(read_line) + + for gene in genes: + output_translation = deque(["" for i in range(n_before + n_after)]) + find_flag, counter = 0, -1 + for cds in output_list[1:]: + if 'gene=' in cds[0] and gene in cds[0]: + find_flag = 1 + else: + try: + output_translation.append(cds[1].split('="')[1][:-1]) + except: + output_translation.append(cds[0].split('="')[1][:-1]) + output_translation.popleft() + if find_flag == 1: + counter += 1 + if counter == n_after: + break + + with open(f'{gene}_{output_fasta}','w') as gbk_file: + gbk_file.write("\n".join(output_translation)) + + +def convert_multiline_fasta_to_oneline(input_fasta: str, output_fasta: str = None) -> None: """ Convert a multiline FASTA file into a one-line FASTA format and save it to a new file. @@ -19,15 +90,16 @@ def convert_multiline_fasta_to_oneline(input_fasta, output_fasta = 'output_auto. """ with open(input_fasta) as fasta_file: output_list = [] - s = '' + read_line = '' for line in fasta_file: if '>' in line: - output_list.append(s[:-1]) - s = '' + output_list.append(read_line[:-1]) + read_line = '' output_list.append(line[:-1]) else: - s += line[:-1] - output_list.append(s[:-1]) + read_line += line[:-1] + output_list.append(read_line[:-1]) with open(output_fasta,'w') as fasta_file: - f.write("\n".join(output_list[1:])) + fasta_file.write("\n".join(output_list[1:])) + From 5da5b652e4d720bf16e75a5ea478eccb194d8e6b Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Mon, 16 Oct 2023 23:59:13 +0300 Subject: [PATCH 43/64] Add 'change_fasta_start_pos' function to shift the start position --- .../bio_files_processor.py | 22 +++++++++++++++++-- 1 file changed, 20 insertions(+), 2 deletions(-) diff --git a/dir_bio_files_processor/bio_files_processor.py b/dir_bio_files_processor/bio_files_processor.py index 61b79db..8aaf4fa 100644 --- a/dir_bio_files_processor/bio_files_processor.py +++ b/dir_bio_files_processor/bio_files_processor.py @@ -6,7 +6,7 @@ def select_genes_from_gbk_to_fasta(input_gbk: str, genes: list, n_before: int, n Select specific genes from a GenBank (GBK) file, extract their genetic information, and save it as a FASTA format file. Args: - input_gbk (str): The path to the input GenBank file. + input_gbk (str): The path to the input GenBank file. Please write your path with directory etc. You can use os.path.join(dir_name, file_name) genes (list of str): A list of gene names to extract from the GenBank file. n_before (int): The number of sequences to include before the selected gene. n_after (int): The number of sequences to include after the selected gene. @@ -74,7 +74,7 @@ def convert_multiline_fasta_to_oneline(input_fasta: str, output_fasta: str = Non Convert a multiline FASTA file into a one-line FASTA format and save it to a new file. Args: - input_fasta (str): The path to the input FASTA file. + input_fasta (str): The path to the input FASTA file. Please write your path with directory etc. You can use os.path.join(dir_name, file_name) output_fasta (str, optional): The path to the output FASTA file. If not provided, the output file name will be generated based on the input file name with '.fasta' extension. @@ -103,3 +103,21 @@ def convert_multiline_fasta_to_oneline(input_fasta: str, output_fasta: str = Non with open(output_fasta,'w') as fasta_file: fasta_file.write("\n".join(output_list[1:])) + +def change_fasta_start_pos(input_fasta: str, shift: int, output_fasta: str = 'output_auto.fasta') -> None: + """ + Shift the start position of a FASTA sequence and save it to a new file. You can use it only for one one-line FASTA-alignment + + Args: + input_fasta (str): The path to the input FASTA file. Please write your path with directory etc. You can use os.path.join(dir_name, file_name) + shift (int): The number of positions to shift the sequence. + output_fasta (str, optional): The name of the output FASTA file. If not provided, it will be generated based on the input file name. + + Returns: + None + """ + with open(input_fasta) as fasta_file: + data = fasta_file.readlines() + data[1] = data[1][shift:] + data[1][:shift] + with open(output_fasta,'w') as fasta_file: + fasta_file.write("".join(data)) From 565bf3c30e031cb2a4fe21166596588e78b15685 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Tue, 17 Oct 2023 00:02:09 +0300 Subject: [PATCH 44/64] Add 'parse_blast_output' function to search and extract sequence id --- .../bio_files_processor.py | 27 +++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/dir_bio_files_processor/bio_files_processor.py b/dir_bio_files_processor/bio_files_processor.py index 8aaf4fa..f497a91 100644 --- a/dir_bio_files_processor/bio_files_processor.py +++ b/dir_bio_files_processor/bio_files_processor.py @@ -121,3 +121,30 @@ def change_fasta_start_pos(input_fasta: str, shift: int, output_fasta: str = 'ou data[1] = data[1][shift:] + data[1][:shift] with open(output_fasta,'w') as fasta_file: fasta_file.write("".join(data)) + + +def parse_blast_output(input_file: str, output_file: str = 'output_auto.fasta') -> None: + """ + Parse the output of a BLAST search and extract sequence identifiers producing significant alignments. + + Args: + input_file (str): The path to the input BLAST output file. Please write your path with directory etc. You can use os.path.join(dir_name, file_name) + output_file (str, optional): The name of the output file for the extracted sequence identifiers. If not provided, it will be generated as 'output_auto.fasta'. + + Returns: + None + """ + with open(input_file) as blast_file: + output = [] + counter = 0 + for line in blast_file: + if 'Sequences producing significant alignments' in line: + counter += 1 + elif 'Description' in line: + counter += 1 + elif counter == 2: + output.append(line.split(' ')[0].split('...')[0]) + counter = 0 + + with open(output_file,'w') as blast_file: + blast_file.write("\n".join(output)) From 30188290ab4b734364d6f82463df0264337b6b98 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Tue, 17 Oct 2023 16:47:41 +0400 Subject: [PATCH 45/64] Create README.md --- dir_bio_files_processor/README.md | 131 ++++++++++++++++++++++++++++++ 1 file changed, 131 insertions(+) create mode 100644 dir_bio_files_processor/README.md diff --git a/dir_bio_files_processor/README.md b/dir_bio_files_processor/README.md new file mode 100644 index 0000000..b59b16d --- /dev/null +++ b/dir_bio_files_processor/README.md @@ -0,0 +1,131 @@ +# 🔬 Gene and Sequence Data Processing Tool + +This tool provides various functions for working with genetic data, including selecting specific genes from GenBank files, converting FASTA files to one-line format, shifting positions in FASTA alignments, and parsing BLAST output files. +### Brief functions overview +| Function | Description | Usage Example | +| -------------------------------------------- | ---------------------------------------------- | -------------------------------------------------------- | +| `select_genes_from_gbk_to_fasta` | Select specific genes from GenBank files and save as FASTA. | `select_genes_from_gbk_to_fasta(input_gbk, genes, n_before, n_after, output_fasta)` | +| `convert_multiline_fasta_to_oneline` | Convert multiline FASTA to one-line format. | `convert_multiline_fasta_to_oneline(input_fasta, output_fasta)` | +| `change_fasta_start_pos` | Shift start position in FASTA alignments. | `change_fasta_start_pos(input_fasta, shift, output_fasta)` | +| `parse_blast_output` | Parse BLAST output and extract sequence identifiers. | `parse_blast_output(input_file, output_file)` | + +## Table of Contents +- [Description](#description) +- [Features](#features) +- [Getting Started](#getting-started) + - [Prerequisites](#prerequisites) + - [Installation](#installation) +- [Usage](#usage) + - [Select Genes from GenBank](#select-genes-from-genbank) + - [Convert Multiline FASTA to Oneline](#convert-multiline-fasta-to-oneline) + - [Change FASTA Start Position](#change-fasta-start-position) + - [Parse BLAST Output](#parse-blast-output) +- [Examples](#examples) +- [Common Errors](#common-errors) +- [Contributing](#contributing) +- [License](#license) + +## Description + +This tool is designed to work with genetic data in GenBank and FASTA file formats. It provides a set of functions to select specific genes from GenBank files, convert FASTA files to a one-line format, shift positions in FASTA alignments, and parse BLAST output files. These functions are particularly useful for various bioinformatics and genetic analysis tasks. + +## Features + +- Select specific genes from GenBank files. +- Convert multiline FASTA files to one-line FASTA format. +- Shift positions in FASTA alignments. +- Parse BLAST output files to extract sequence identifiers. + +## Getting Started + +Follow the instructions to install and use the tool. + +### Prerequisites + +- Python (>=3.0) + +### Installation + +1. Clone the repository from GitHub: + + ```bash + git clone https://github.com/your-username/your-repo.git + ``` + +2. Install the required packages: + + ```bash + pip install package1 package2 + ``` + +## Usage + +Learn how to use each function provided by the tool. If you need sample files for these functions, please check the 'example_files' directory in the main repository :blush: + +### :arrow_forward: Select Genes from GenBank + +```python +from gene_tool import select_genes_from_gbk_to_fasta + +# Example usage +select_genes_from_gbk_to_fasta( + input_gbk="input.gbk", + genes=["gene1", "gene2"], + n_before=5, + n_after=5, + output_fasta="output.fasta" +) +``` + +### :arrow_forward: Convert Multiline FASTA to Oneline + +```python +from gene_tool import convert_multiline_fasta_to_oneline + +# Example usage +convert_multiline_fasta_to_oneline( + input_fasta="input.fasta", + output_fasta="output.fasta" +) +``` + +### :arrow_forward: Change FASTA Start Position + +```python +from gene_tool import change_fasta_start_pos + +# Example usage +change_fasta_start_pos( + input_fasta="input.fasta", + shift=10, + output_fasta="output.fasta" +) +``` + +### :arrow_forward: Parse BLAST Output + +```python +from gene_tool import parse_blast_output + +# Example usage +parse_blast_output( + input_file="blast_output.txt", + output_file="output.fasta" +) +``` + +## Common Errors + +:white_check_mark: Please ensure that you have provided the correct file path with all the necessary directories. If you are uncertain about the path, you can use os.path.join(dir_name1, dir_name2, file_name) for assistance + +- If the input file path provided is incorrect or the file does not exist, the functions will raise a `FileNotFoundError`. +- When specifying gene names in `select_genes_from_gbk_to_fasta`, ensure the gene names match the ones in the GenBank file, or the function won't find any genes. +- Make sure to provide a valid input FASTA file path for `convert_multiline_fasta_to_oneline`. If the file is not found, a `FileNotFoundError` will be raised. +- Ensure that the `shift` parameter in `change_fasta_start_pos` is within the valid range for the length of the sequence. + +❗ Be careful if you have not specified an output file. Some functions use the same default output file names as their default arguments. + +For more detailed information on each function and usage, see below. + + +If you have any questions, suggestions, or encounter any issues while using the amino-analyzer tool, feel free to reach out [CaptnClementine](https://github.com/YourGitHubUsername) 💛 From f05394093c271fa1b63dea55309a2dc59a21d8a8 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Tue, 17 Oct 2023 16:51:26 +0400 Subject: [PATCH 46/64] Create 'example_fasta_for_convert_multiline_fasta_to_oneline.fasta' --- ...r_convert_multiline_fasta_to_oneline.fasta | 59 +++++++++++++++++++ 1 file changed, 59 insertions(+) create mode 100644 dir_bio_files_processor/example_files/example_fasta_for_convert_multiline_fasta_to_oneline.fasta diff --git a/dir_bio_files_processor/example_files/example_fasta_for_convert_multiline_fasta_to_oneline.fasta b/dir_bio_files_processor/example_files/example_fasta_for_convert_multiline_fasta_to_oneline.fasta new file mode 100644 index 0000000..944a3d7 --- /dev/null +++ b/dir_bio_files_processor/example_files/example_fasta_for_convert_multiline_fasta_to_oneline.fasta @@ -0,0 +1,59 @@ +>5S_rRNA::NODE_272_length_223_cov_0.720238:18-129(+) +ACGGCCATAGGACTTTGAAAGCACCGCATCCCGTCCGATCTGCGAAGTTAACCAAGATGCCGCCTGGTTAGTACCATGGTGGGGGACCACATGGGAATCCCT +GGTGCTGTG +>16S_rRNA::NODE_80_length_720_cov_1.094737:313-719(+) +TTGGCTTCTTAGAGGGACTTTTGATGTTTAATCAAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT +GACAAAGTCAACGAGTTTTATTATTATTCCTTTATTGAAAAATATGGGTAATCTTGTTAAACTTTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT +CAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGGCTTAGT +GAGCCCTTGGGAGTGGTCCATTTGAGCCGGCAACGGCACGTTTGGACTGCAAACTTGGGCAAACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGT +>16S_rRNA::NODE_1_length_2558431_cov_75.185164:2153860-2155398(+) +TTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAACAGCTTGCTGTTTCGCTGACGAGTGG +CGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACC +TTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTTGTTGGTGGGGTAACGGCTCACCAAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCA +GCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTGTATGA +AGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGAGGAAGGGAGTAAAGTTAATACCTTTGCTCATTGACGTTACCCGCAGAAGAAGCACCGGCTAACTC +CGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCCCCG +GGCTCAACCTGGGAACTGCATCTGATACTGGCAAGCTTGAGTCTCGTAGAGGGGGGTAGAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAAT +ACCGGTGGCGAAGGCGGCCCCCTGGACGAAGACTGACGCTCAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGA +TGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTAACGCGTTAAGTCGACCGCCTGGGGAGTACGGCCGCAAGGTTAAAACTCAAATGAATT +GACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAAT +GTGCCTTCGGGAACCGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCCTTTGT +TGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACA +CACGTGCTACAATGGCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGTCTGCAACTCGACTCCA +TGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAA +GAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATC +ACCTCCTT +>16S_rRNA::NODE_1_length_2558431_cov_75.185164:793941-795479(-) +TTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAACAGCTTGCTGTTTCGCTGACGAGTGG +CGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACC +TTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTTGTTGGTGGGGTAACGGCTCACCAAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCA +GCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTGTATGA +AGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGAGGAAGGGAGTAAAGTTAATACCTTTGCTCATTGACGTTACCCGCAGAAGAAGCACCGGCTAACTC +CGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCCCCG +GGCTCAACCTGGGAACTGCATCTGATACTGGCAAGCTTGAGTCTCGTAGAGGGGGGTAGAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAAT +ACCGGTGGCGAAGGCGGCCCCCTGGACGAAGACTGACGCTCAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGA +TGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTAACGCGTTAAGTCGACCGCCTGGGGAGTACGGCCGCAAGGTTAAAACTCAAATGAATT +GACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAAT +GTGCCTTCGGGAACCGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCCTTTGT +TGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACA +CACGTGCTACAATGGCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGTCTGCAACTCGACTCCA +TGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAA +GAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATC +ACCTCCTT +>16S_rRNA::NODE_4_length_428221_cov_75.638017:281055-282593(-) +TTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAACAGCTTGCTGTTTCGCTGACGAGTGG +CGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACC +TTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTTGTTGGTGGGGTAACGGCTCACCAAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCA +GCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTGTATGA +AGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGAGGAAGGGAGTAAAGTTAATACCTTTGCTCATTGACGTTACCCGCAGAAGAAGCACCGGCTAACTC +CGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCCCCG +GGCTCAACCTGGGAACTGCATCTGATACTGGCAAGCTTGAGTCTCGTAGAGGGGGGTAGAATTCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAAT +ACCGGTGGCGAAGGCGGCCCCCTGGACGAAGACTGACGCTCAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGA +TGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTAACGCGTTAAGTCGACCGCCTGGGGAGTACGGCCGCAAGGTTAAAACTCAAATGAATT +GACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAAT +GTGCCTTCGGGAACCGTGAGACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCCTTTGT +TGCCAGCGGTCCGGCCGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACA +CACGTGCTACAATGGCGCATACAAAGAGAAGCGACCTCGCGAGAGCAAGCGGACCTCATAAAGTGCGTCGTAGTCCGGATTGGAGTCTGCAACTCGACTCCA +TGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTTGCAAAA +GAAGTAGGTAGCTTAACCTTCGGGAGGGCGCTTACCACTTTGTGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATC +ACCTCCTT From 88e034d6a659d7e957a5902650229ebe252cc8a8 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Tue, 17 Oct 2023 16:53:12 +0400 Subject: [PATCH 47/64] Create example_for_change_fasta_start_pos --- .../example_files/example_for_change_fasta_start_pos | 1 + 1 file changed, 1 insertion(+) create mode 100644 dir_bio_files_processor/example_files/example_for_change_fasta_start_pos diff --git a/dir_bio_files_processor/example_files/example_for_change_fasta_start_pos b/dir_bio_files_processor/example_files/example_for_change_fasta_start_pos new file mode 100644 index 0000000..51bd4f2 --- /dev/null +++ b/dir_bio_files_processor/example_files/example_for_change_fasta_start_pos @@ -0,0 +1 @@ +AAATTTGCTGGGGGGAAAACTGAAAAAATGTGTAAATTTGCTGGGGAACCCCCCCCCCCCCGGAAAACTGAAAAAATGTGT From 7c591a7d083247e02ba0b9b9527df748fec2441f Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Tue, 17 Oct 2023 16:55:06 +0400 Subject: [PATCH 48/64] Create 'example_for_select_genes_from_gbk_to_fasta' --- ...example_for_select_genes_from_gbk_to_fasta | 110 ++++++++++++++++++ 1 file changed, 110 insertions(+) create mode 100644 dir_bio_files_processor/example_files/example_for_select_genes_from_gbk_to_fasta diff --git a/dir_bio_files_processor/example_files/example_for_select_genes_from_gbk_to_fasta b/dir_bio_files_processor/example_files/example_for_select_genes_from_gbk_to_fasta new file mode 100644 index 0000000..2d5f22b --- /dev/null +++ b/dir_bio_files_processor/example_files/example_for_select_genes_from_gbk_to_fasta @@ -0,0 +1,110 @@ +LOCUS NODE_1_length_2558431_cov_75.1851642558431 bp DNA linear +BCT28-ноя-2022 +DEFINITION Escherichia coli strain strain. +ACCESSION +VERSION +KEYWORDS . +SOURCE Escherichia coli + ORGANISM Escherichia coli + Bacteria; Proteobacteria; gamma subdivision; Enterobacteriaceae; + Escherichia. +COMMENT Annotated using prokka 1.14.6 from + https://github.com/tseemann/prokka. +FEATURES Location/Qualifiers + source 1..2558431 + /organism="Escherichia coli" + /mol_type="genomic DNA" + /strain="strain" + /db_xref="taxon:562" + CDS 384..893 + /locus_tag="IFLAKNEJ_00001" + /inference="ab initio prediction:Prodigal:002006" + /codon_start=1 + /transl_table=11 + /product="hypothetical protein" + /translation="MNQQRFDDSTLIRIFALHELHRLKEHGLTRGALLDYHSRYKLVF + LAHSQPEYRKLGPFVADIHQWQNLDDFYNQYYQRVIVLLSHPANPRDHTNVLMHVQGY + FRPHIDSTERQQLAALIDSYRRGEQPLLAPLMRIKHYMALYPDAWLSGQRYFELWPRV + INLRHSGVL" + CDS 890..2308 + /gene="phrB" + /locus_tag="IFLAKNEJ_00002" + /EC_number="4.1.99.3" + /inference="ab initio prediction:Prodigal:002006" + /inference="similar to AA sequence:UniProtKB:P00914" + /codon_start=1 + /transl_table=11 + /product="Deoxyribodipyrimidine photo-lyase" + /db_xref="COG:COG0415" + /translation="MITHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT + HNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFY + NYQYEVNERARDVEVERALRNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLK + RLREGMPECVAAPKVRSSGSIEPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQN + GAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLSEL + IWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQL + NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD + AAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQP + IVDHKEARLRTLAAYEEARKGA" + CDS complement(2350..3831) + /gene="dtpD" + /locus_tag="IFLAKNEJ_00003" + /inference="ab initio prediction:Prodigal:002006" + /inference="similar to AA sequence:UniProtKB:P75742" + /codon_start=1 + /transl_table=11 + /product="Dipeptide permease D" + /db_xref="COG:COG3104" + /translation="MNKHASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYND + THAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSF + LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGY + AQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLV + LLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFF + SMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKE + SVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAEL + FIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINY + SINAYIEVFDQITWGALACVGLVLMIWLYQALKFRNRALALES" + CDS 4102..4845 + /gene="ybgI" + /locus_tag="IFLAKNEJ_00004" + /inference="ab initio prediction:Prodigal:002006" + /inference="similar to AA sequence:UniProtKB:P0AFP6" + /codon_start=1 + /transl_table=11 + /product="GTP cyclohydrolase 1 type 2" + /db_xref="COG:COG0327" + /translation="MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTA + SQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDA + HPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDT + GPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHAT + ERGGIRALSEWLNENTDLDVTFIDIPNPA" + CDS 4868..5524 + /gene="pxpB" + /locus_tag="IFLAKNEJ_00005" + /EC_number="3.5.2.9" + /inference="ab initio prediction:Prodigal:002006" + /inference="similar to AA sequence:UniProtKB:P0AAV4" + /codon_start=1 + /transl_table=11 + /product="5-oxoprolinase subunit B" + /db_xref="COG:COG2049" + /translation="MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVV + EAIPGMNNITVILRNPESLALDAIERLQRWWEESEALEPESRFIEIPVVYGGAGGPDL + AVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPA + GSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGVC + " + CDS 5518..6450 + /gene="pxpC" + /locus_tag="IFLAKNEJ_00006" + /EC_number="3.5.2.9" + /inference="ab initio prediction:Prodigal:002006" + /inference="similar to AA sequence:UniProtKB:P75745" + /codon_start=1 + /transl_table=11 + /product="5-oxoprolinase subunit C" + /db_xref="COG:COG1984" + /translation="MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLV + GNDANAPALEITLGQLTVEFETDGWFALTGAGCEARLDDNAVWTGWRLPMKAGQRLTL + KRPQHGMRSYLAVAGGIDVPPVMGSCSTDLNVGIGGLEGRLLKDGDRLPIGKSKRDFM + EAQGVKQLLWGNRIRALPGPEYHEFDRASQDAFWRSPWQLSPQSNRMGYRLQGQILKR + TTDRELLSHGLLPGVVQVPHNGQPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQ + PIHFVQCSLEEALKARQDQQRYFEQLAWRLHNEN" From 423d95d04e9b9dc78f3c8e8371efe2fb3f6827fb Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Tue, 17 Oct 2023 16:55:41 +0400 Subject: [PATCH 49/64] Rename example_for_change_fasta_start_pos to example_for_change_fasta_start_pos.fasta --- ...e_fasta_start_pos => example_for_change_fasta_start_pos.fasta} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename dir_bio_files_processor/example_files/{example_for_change_fasta_start_pos => example_for_change_fasta_start_pos.fasta} (100%) diff --git a/dir_bio_files_processor/example_files/example_for_change_fasta_start_pos b/dir_bio_files_processor/example_files/example_for_change_fasta_start_pos.fasta similarity index 100% rename from dir_bio_files_processor/example_files/example_for_change_fasta_start_pos rename to dir_bio_files_processor/example_files/example_for_change_fasta_start_pos.fasta From bc5297f8e17a744d46023540a5f3c3c27341e121 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Tue, 17 Oct 2023 16:57:35 +0400 Subject: [PATCH 50/64] Create example_for_parse_blast_output --- .../example_for_parse_blast_output | 9316 +++++++++++++++++ 1 file changed, 9316 insertions(+) create mode 100644 dir_bio_files_processor/example_files/example_for_parse_blast_output diff --git a/dir_bio_files_processor/example_files/example_for_parse_blast_output b/dir_bio_files_processor/example_files/example_for_parse_blast_output new file mode 100644 index 0000000..3899a48 --- /dev/null +++ b/dir_bio_files_processor/example_files/example_for_parse_blast_output @@ -0,0 +1,9316 @@ +RID: SKN9EU7P013 +Job Title:64930..66612 +Program: BLASTP +Database: nr All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects +Query #1: 64930..66612 Query ID: lcl|Query_88895 Length: 560 + +Sequences producing significant alignments: + Scientific Common Max Total Query E Per. Acc. +Description Name Name Taxid Score Score cover Value Ident Len Accession +PilN family type IVB pilus formation outer membrane protein... Enterobacter... NA 543 1143 1143 100% 0.0 100.00 560 WP_000748144.1 +PilN family type IVB pilus formation outer membrane protein... Shigella fle... NA 623 1143 1143 100% 0.0 99.82 560 EHO7738959.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1142 1142 100% 0.0 99.64 560 WP_210765132.1 +PilN family type IVB pilus formation outer membrane protein... Enterobacter... NA 543 1142 2285 100% 0.0 99.64 560 WP_032311054.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 149539 1142 1142 100% 0.0 99.64 560 EEC1226044.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1142 2285 100% 0.0 99.64 560 EFD8809204.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1142 1142 100% 0.0 99.64 560 EHE5075040.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1142 1142 100% 0.0 99.64 560 WP_107127183.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1142 1142 100% 0.0 99.64 560 WP_096917606.1 +TPA: PilN family type IVB pilus formation outer membrane prote... Escherichia ... NA 562 1142 1142 100% 0.0 99.64 560 HBA5085983.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1142 1142 100% 0.0 99.64 560 WP_215736069.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 90371 1142 1142 100% 0.0 99.64 560 EEB5748303.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1142 1142 100% 0.0 99.64 560 ECI9618512.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 611 1142 1142 100% 0.0 99.64 560 EDQ2102711.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1142 1142 100% 0.0 99.64 560 EBI7375650.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 913079 1142 1142 100% 0.0 99.64 560 EDR1715363.1 +PilN family type IVB pilus formation outer membrane protein... Enterobacter... NA 543 1142 1142 100% 0.0 99.82 560 WP_000748143.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1142 1142 100% 0.0 99.64 560 EAO8534873.1 +TPA: PilN family type IVB pilus formation outer membrane prote... Escherichia ... NA 562 1142 1142 100% 0.0 99.82 561 HAI6915211.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1142 1142 100% 0.0 99.64 560 EHS9585445.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1142 1142 100% 0.0 99.82 560 WP_137475301.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1142 1142 100% 0.0 99.64 560 EBI8111515.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1142 1142 100% 0.0 99.64 560 WP_100535643.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1142 1142 100% 0.0 99.64 560 WP_001492934.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1142 1142 100% 0.0 99.64 560 EEX6119536.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1142 1142 100% 0.0 99.64 560 EBT9257967.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1142 1142 100% 0.0 99.64 560 EAP7536521.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1142 1142 100% 0.0 99.64 560 EAN6212157.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1142 1142 100% 0.0 99.64 560 WP_223350509.1 +TPA: PilN family type IVB pilus formation outer membrane prote... Escherichia ... NA 562 1142 1142 100% 0.0 99.64 560 HAN4138994.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 149539 1142 1142 100% 0.0 99.64 560 EDD0821541.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 595 1142 1142 100% 0.0 99.64 560 EJJ8295379.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1142 1142 100% 0.0 99.64 560 ECL7909595.1 +PilN family type IVB pilus formation outer membrane protein... Enterobacter... NA 543 1142 1142 100% 0.0 99.64 560 WP_054170956.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 59201 1142 1142 100% 0.0 99.64 560 EBF8583542.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1142 1142 100% 0.0 99.64 560 WP_063119479.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1142 1142 100% 0.0 99.46 560 WP_063102673.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1142 1142 100% 0.0 99.64 560 WP_231828679.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1142 1142 100% 0.0 99.64 560 WP_001542528.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1142 1142 100% 0.0 99.64 560 EAN6056132.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1142 1142 100% 0.0 99.64 560 EEQ3072566.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 595 1142 1142 100% 0.0 99.64 560 ECU1080900.1 +TPA: PilN family type IVB pilus formation outer membrane prote... Shigella sonnei NA 624 1141 1141 100% 0.0 99.64 560 HBH7660684.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 WP_112901403.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28144 1141 1141 100% 0.0 99.64 560 EDL0974572.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1141 1141 100% 0.0 99.64 560 EBC5775852.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 EGT2184813.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 WP_069907223.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 90371 1141 1141 100% 0.0 99.64 560 EBY3089677.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1141 1141 100% 0.0 99.64 560 EBA9760179.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1141 1141 100% 0.0 99.64 560 EGL2462922.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1141 1141 100% 0.0 99.64 560 WP_097366090.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 WP_208507021.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 149539 1141 1141 100% 0.0 99.64 560 EBV3968551.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1141 1141 100% 0.0 99.64 560 EHI8886624.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 EGO4207310.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 EET3662453.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 WP_195808243.1 +TPA: PilN family type IVB pilus formation outer membrane prote... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 HAN3816316.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 2283 100% 0.0 99.64 560 KAB3069754.1 +PilN family type IVB pilus formation outer membrane protein... Enterobacter... NA 543 1141 1141 100% 0.0 99.64 560 WP_032307225.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 WP_201481699.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1141 1141 100% 0.0 99.64 560 EGA5010142.1 +TPA: PilN family type IVB pilus formation outer membrane prote... Salmonella e... NA 216597 1141 2283 100% 0.0 99.64 560 HAD7041184.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 46626 1141 1141 100% 0.0 99.64 560 ECU4346406.1 +TPA: PilN family type IVB pilus formation outer membrane prote... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 HCE8763740.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 WP_227898577.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1141 1141 100% 0.0 99.64 560 EAW4617119.1 +PilN family type IVB pilus formation outer membrane protein... Enterobacter... NA 543 1141 1141 100% 0.0 99.64 560 WP_052935422.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1141 1141 100% 0.0 99.64 560 EIQ3047487.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 EFA8762639.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 WP_085008833.1 +TPA: PilN family type IVB pilus formation outer membrane prote... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 HAY3650265.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 WP_053528518.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1141 1141 100% 0.0 99.64 560 EJN9966433.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 EGK3851626.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 EET0819184.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 EEZ2734660.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 611 1141 1141 100% 0.0 99.64 560 EDI2475573.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 EIH9330170.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1141 1141 100% 0.0 99.64 560 EAS4357890.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 WP_054474128.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1141 1141 100% 0.0 99.64 560 EIE7879189.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 EJE5324248.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 WP_047090374.1 +TPA: PilN family type IVB pilus formation outer membrane prote... Salmonella e... NA 59201 1141 1141 100% 0.0 99.64 560 HBD8355522.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 EFP6689803.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 59201 1141 1141 100% 0.0 99.64 560 EBG3112723.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 WP_001393544.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1141 1141 100% 0.0 99.64 560 EGC1493968.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 208962 1141 1141 100% 0.0 99.64 560 WP_149450826.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 EJF3603839.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 EEQ2330754.1 +PilN family type IVB pilus formation outer membrane protein... Escherichia ... NA 562 1141 1141 100% 0.0 99.64 560 MBZ8719225.1 +TPA: PilN family type IVB pilus formation outer membrane prote... Salmonella e... NA 90371 1141 1141 100% 0.0 99.64 560 HAE6312774.1 +PilN family type IVB pilus formation outer membrane protein... Salmonella e... NA 28901 1141 1141 100% 0.0 99.64 560 EFV1525961.1 + + +Alignments: + +>MULTISPECIES: PilN family type IVB pilus formation outer membrane protein [Enterobacteriaceae] +Sequence ID: WP_000748144.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EAR8819182.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Agona] +Sequence ID: EBV0341776.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Hadar] +Sequence ID: EBV9185269.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Bareilly] +Sequence ID: EBX0623180.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Enteritidis] +Sequence ID: ECA3694349.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Javiana] +Sequence ID: ECD1449514.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Kentucky] +Sequence ID: ECD2305444.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Stanley] +Sequence ID: ECU8958120.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Corvallis] +Sequence ID: EDA8397670.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Java] +Sequence ID: EDH6188409.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-] +Sequence ID: EEE3401611.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Paratyphi A] +Sequence ID: EEO7527228.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O157:H7] +Sequence ID: EFC0506384.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Alachua] +Sequence ID: EHG6622141.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Braenderup] +Sequence ID: EHL1781099.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Shigella boydii] +Sequence ID: EJC8812975.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Chester] +Sequence ID: EJM1953745.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli JJ2591] +Sequence ID: HAX0050684.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Klebsiella pneumoniae] +Sequence ID: HBT9418282.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Miami] +Sequence ID: HCB5543995.1 Length: 560 +Range 1: 1 to 560 + +Score:1143 bits(2957), Expect:0.0, +Method:Compositional matrix adjust., +Identities:560/560(100%), Positives:560/560(100%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Shigella flexneri] +Sequence ID: EHO7738959.1 Length: 560 +>type IVB pilus formation outer membrane protein, R64 PilN family [Shigella flexneri CCH060] +Sequence ID: EIQ17472.1 Length: 560 +Range 1: 1 to 560 + +Score:1143 bits(2957), Expect:0.0, +Method:Compositional matrix adjust., +Identities:559/560(99%), Positives:560/560(100%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQV+SVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVMSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: WP_210765132.1 Length: 560 +>Bundle-forming pilus B [Escherichia coli] +Sequence ID: VVZ82593.1 Length: 560 +>Bundle-forming pilus B [Escherichia coli] +Sequence ID: VWN19240.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSS+LIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSILIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>MULTISPECIES: PilN family type IVB pilus formation outer membrane protein [Enterobacteriaceae] +Sequence ID: WP_032311054.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica] +Sequence ID: EBQ4810871.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Infantis] +Sequence ID: ECA4551164.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Anatum] +Sequence ID: ECJ0010484.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Newport] +Sequence ID: ECX2870760.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Montevideo] +Sequence ID: ECY2964340.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Derby] +Sequence ID: EDG5214404.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Give] +Sequence ID: EDM6907849.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Norwich] +Sequence ID: EDR1276101.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Hato] +Sequence ID: EDR7442783.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Agbeni] +Sequence ID: EDT1998456.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Weltevreden] +Sequence ID: EDU8631042.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Meleagridis] +Sequence ID: EEE0274368.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Senftenberg] +Sequence ID: EEJ9220961.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O157] +Sequence ID: EFE1062347.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Shigella flexneri] +Sequence ID: EFW7663966.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Worthington] +Sequence ID: EGM5376828.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Agona] +Sequence ID: EGM7122426.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar 4,5,12:b:-] +Sequence ID: EHF4380778.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Bovismorbificans] +Sequence ID: EIN0556271.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O25b:H4-ST131] +Sequence ID: HAN2541537.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Citrobacter koseri] +Sequence ID: HCD2610568.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQ+SREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQISREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +Range 2: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQ+SREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQISREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Enteritidis] +Sequence ID: EEC1226044.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Heidelberg] +Sequence ID: EHE2048114.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: HAJ5197570.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: HCC7646721.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTT+GQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTIGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EFD8809204.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EFK2171052.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTW+DNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWIDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +Range 2: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTW+DNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWIDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EHE5075040.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVS+VTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSIVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: WP_107127183.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EAR3913717.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Saintpaul] +Sequence ID: EDE8578525.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: EDH0372662.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Mississippi] +Sequence ID: EDS5872774.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Adelaide] +Sequence ID: EEI9617152.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O157:H7] +Sequence ID: EEV1141861.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Newport] +Sequence ID: EHG0170433.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Enteritidis] +Sequence ID: EHY5314496.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTP+PIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPIPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: WP_096917606.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: ECR9109172.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EHX2420039.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINP+PVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPIPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: HBA5085983.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIA+ALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAIALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: WP_215736069.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EAW5417419.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: MBU0091670.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: MBU0130875.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: MBU0200198.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: MBX8823742.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGD+SVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDISVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: EEB5748303.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITA+CGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAICGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: ECI9618512.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EIG5817534.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSV+TSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVITSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Heidelberg] +Sequence ID: EDQ2102711.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: HAH4702768.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: HAH5450600.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNL+YKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLIYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EBI7375650.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EBO7504350.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGN+QLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNIQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Mississippi] +Sequence ID: EDR1715363.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Enteritidis] +Sequence ID: EEC2923375.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EEN7939912.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica] +Sequence ID: EEQ0920019.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQK+NLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKINLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>MULTISPECIES: PilN family type IVB pilus formation outer membrane protein [Enterobacteriaceae] +Sequence ID: WP_000748143.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. diarizonae] +Sequence ID: EAA6549009.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Kottbus] +Sequence ID: EAA7926052.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Agama] +Sequence ID: EBC9853506.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Altona] +Sequence ID: EBD0021720.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Saintpaul str. CFSAN000610] +Sequence ID: EBF8662537.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] +Sequence ID: EBH8118944.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] +Sequence ID: EBH8171851.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Manhattan] +Sequence ID: EBH9236132.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Tennessee] +Sequence ID: EBL5564298.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Litchfield] +Sequence ID: EBM8608387.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Mikawasima] +Sequence ID: EBQ8698723.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Bareilly] +Sequence ID: EBQ9400575.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Telelkebir] +Sequence ID: EBQ9405111.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Falkensee] +Sequence ID: EBR7944572.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Agbeni] +Sequence ID: EBR8787502.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Bovismorbificans] +Sequence ID: EBR9036015.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Havana] +Sequence ID: EBR9110902.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Abony] +Sequence ID: EBR9761756.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Umbilo] +Sequence ID: EBS0639200.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Reading] +Sequence ID: EBS1179193.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Javiana] +Sequence ID: EBS1954294.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Livingstone] +Sequence ID: EBS2537682.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Kisangani] +Sequence ID: EBS3117918.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Richmond] +Sequence ID: EBS3504448.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Kingston] +Sequence ID: EBS4125716.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Sandiego] +Sequence ID: EBS4768510.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Coeln] +Sequence ID: EBS5328993.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Poona] +Sequence ID: EBS5514990.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Ruiru] +Sequence ID: EBS6309880.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Krefeld] +Sequence ID: EBU7183911.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Ibadan] +Sequence ID: EBU7572338.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Goldcoast] +Sequence ID: EBU7605180.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Stanleyville] +Sequence ID: EBU8168590.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Emek] +Sequence ID: EBV6517147.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar 4,12:i:-] +Sequence ID: EBV9168511.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Wangata] +Sequence ID: EBW1789226.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Duisburg] +Sequence ID: EBW4307788.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Ituri] +Sequence ID: EBW4694101.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Amsterdam] +Sequence ID: EBW5440647.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Hull] +Sequence ID: EBW7805946.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Bispebjerg] +Sequence ID: EBX0278985.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Oslo] +Sequence ID: EBX0890562.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Chailey] +Sequence ID: EBX2156204.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Gatuni] +Sequence ID: EBX5878466.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Larochelle] +Sequence ID: EBX6543886.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Kenya] +Sequence ID: EBX7455046.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Irumu] +Sequence ID: EBY0416660.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Wien] +Sequence ID: EBY1896824.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Isangi] +Sequence ID: EBY7751038.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Kiambu] +Sequence ID: EBZ7171092.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Aberdeen] +Sequence ID: EBZ8732047.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Idikan] +Sequence ID: ECA7561576.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Glostrup] +Sequence ID: ECA9065040.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Putten] +Sequence ID: ECB5475947.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Banana] +Sequence ID: ECB5600772.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Cairina] +Sequence ID: ECB6818443.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Eko] +Sequence ID: ECB8674717.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Ajiobo] +Sequence ID: ECD0255043.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Papuana] +Sequence ID: ECD0768458.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Oakland] +Sequence ID: ECD1122344.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Teshie] +Sequence ID: ECD2955760.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Adjame] +Sequence ID: ECD3794213.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Arechavaleta] +Sequence ID: ECD6362505.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. salamae] +Sequence ID: ECD9453452.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Durham] +Sequence ID: ECF2545339.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Potsdam] +Sequence ID: ECF3904265.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Hato] +Sequence ID: ECG2028861.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Tchad] +Sequence ID: ECG3414594.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Newington] +Sequence ID: ECG5311327.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Abaetetuba] +Sequence ID: ECG5420809.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. houtenae] +Sequence ID: ECI4806909.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Bonn] +Sequence ID: ECI6994612.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Telaviv] +Sequence ID: ECI7628280.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Diguel] +Sequence ID: ECK9220781.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Typhisuis str. CFSAN000654] +Sequence ID: ECK9486305.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Colindale] +Sequence ID: ECP0470762.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Johannesburg] +Sequence ID: ECS2735088.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Adelaide] +Sequence ID: ECS3333841.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Urbana] +Sequence ID: ECS4147624.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Birkenhead] +Sequence ID: ECS6294856.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Herston] +Sequence ID: ECS6493907.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. CFSAN000547] +Sequence ID: ECU9436483.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Ridge] +Sequence ID: ECY5732700.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Muenster] +Sequence ID: EDB5463638.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Amager] +Sequence ID: EDD8811529.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Shubra] +Sequence ID: EDE8386077.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Duesseldorf] +Sequence ID: EDH5433128.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Gaminara] +Sequence ID: EDN4846498.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN003485] +Sequence ID: EDP9505193.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar O rough] +Sequence ID: EDQ4376633.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Senegal] +Sequence ID: EDQ4838403.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Lille] +Sequence ID: EDR0208466.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Cubana] +Sequence ID: EDR0618640.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar 6,7:-:1,5] +Sequence ID: EDR3368719.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar 9,12:-:1,5] +Sequence ID: EDR5491628.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Hvittingfoss] +Sequence ID: EDR7238320.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Copenhagen] +Sequence ID: EDR9700230.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar 4,[5],12:b:-] +Sequence ID: EDR9822826.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Tallahassee] +Sequence ID: EDS3275224.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN003465] +Sequence ID: EDS5307636.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Baildon] +Sequence ID: EDT0023276.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Pomona] +Sequence ID: EDT1205713.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Albert] +Sequence ID: EDT4373593.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN003460] +Sequence ID: EDT8781975.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Norwich] +Sequence ID: EDU4385888.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN003486] +Sequence ID: EDV0706607.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN003484] +Sequence ID: EDV0891069.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN003470] +Sequence ID: EDV9755214.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN003468] +Sequence ID: EDW2514703.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN003476] +Sequence ID: EDW2542564.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Alabama] +Sequence ID: EDX7317106.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Liverpool] +Sequence ID: EED8922435.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Duval] +Sequence ID: EED9561366.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Durban] +Sequence ID: EEE0610984.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Miami] +Sequence ID: EEE1039241.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Okatie] +Sequence ID: EEE5081648.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Kalamu] +Sequence ID: EEF3438538.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN003469] +Sequence ID: EEJ3434400.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN003477] +Sequence ID: EEJ7258940.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Lexington var. 15+] +Sequence ID: EEJ9110124.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Panama] +Sequence ID: EEN5815768.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O156:H25] +Sequence ID: EEW3510011.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O21:H28] +Sequence ID: EEY7914905.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O20] +Sequence ID: EEZ5651983.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O2] +Sequence ID: EEZ5671776.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O8] +Sequence ID: EEZ5676320.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O25] +Sequence ID: EEZ5681350.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O15] +Sequence ID: EEZ5757253.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O101] +Sequence ID: EEZ5762060.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O105] +Sequence ID: EEZ5806333.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O19] +Sequence ID: EEZ5978630.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O117] +Sequence ID: EEZ6010118.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O171] +Sequence ID: EEZ6015952.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O21] +Sequence ID: EEZ6034590.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O1] +Sequence ID: EEZ6058048.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O120] +Sequence ID: EEZ7095744.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O160] +Sequence ID: EEZ8618795.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O78] +Sequence ID: EEZ8718285.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O150] +Sequence ID: EEZ9006507.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O32] +Sequence ID: EEZ9625130.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O13] +Sequence ID: EFA4129690.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O15:H21] +Sequence ID: EFA4157627.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O2:H32] +Sequence ID: EFA4204076.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O36] +Sequence ID: EFA4287989.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O53] +Sequence ID: EFA5375388.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O6] +Sequence ID: EFA5393687.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O39:H4] +Sequence ID: EFA8806487.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O74] +Sequence ID: EFA8815171.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O100] +Sequence ID: EFB4131088.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O88:H1] +Sequence ID: EFB4140024.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O113] +Sequence ID: EFB4145433.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O128] +Sequence ID: EFB4150388.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O21:H34] +Sequence ID: EFN7222566.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O26:H32] +Sequence ID: EFN7232721.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O43:H2] +Sequence ID: EFN7255688.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O162:H9] +Sequence ID: EFN7261366.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O145] +Sequence ID: EFN8423624.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O68] +Sequence ID: EFN8432735.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O85:H32] +Sequence ID: EFN8571092.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O53:H10] +Sequence ID: EFN8590683.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli H8] +Sequence ID: EFN8617313.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Ank] +Sequence ID: EGF1547330.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Paratyphi A] +Sequence ID: EGI6604320.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Stourbridge] +Sequence ID: EGJ7183053.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Eboko] +Sequence ID: EGR9368827.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Nima] +Sequence ID: EGS0286506.1 Length: 560 +>type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli 3030-1] +Sequence ID: EGW78955.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. houtenae serovar 50:g,z51:-] +Sequence ID: EHD0028021.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Barranquilla] +Sequence ID: EHF3290372.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Cannstatt] +Sequence ID: EHH2611739.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar 47:z4,z23:-] +Sequence ID: EHJ5082946.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Rough:r:-] +Sequence ID: EHM1798203.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella bongori] +Sequence ID: EHM2231073.1 Length: 560 +>R64 PilN family type IVB pilus formation outer membrane protein [Escherichia coli 4_1_47FAA] +Sequence ID: EHP63120.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O55] +Sequence ID: EIH0606166.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O163:H38] +Sequence ID: EIH1080791.1 Length: 560 +>type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli 4.0967] +Sequence ID: EII31740.1 Length: 560 +>R64 PilN family type IVB pilus formation outer membrane protein [Escherichia sp. KTE114] +Sequence ID: EOU50267.1 Length: 560 +>pilus biosynthesis protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SARA33] +Sequence ID: ERF97068.1 Length: 560 +>lipoprotein [Salmonella enterica subsp. enterica serovar Virchow str. ATCC 51955] +Sequence ID: ESF01366.1 Length: 560 +>type IVB pilus formation outer membrane protein, R64 PilN family [Salmonella enterica subsp. enterica serovar Heidelberg str. N4403] +Sequence ID: EYH79359.1 Length: 560 +>type IVB pilus formation outer membrane protein, R64 PilN family [Salmonella enterica subsp. enterica serovar Heidelberg str. N189] +Sequence ID: EYH94148.1 Length: 560 +>PilN type IV pilus secretin [Salmonella enterica subsp. enterica serovar Heidelberg str. 41576] +Sequence ID: EYI44326.1 Length: 560 +>PilN type IV pilus secretin [Salmonella enterica subsp. enterica serovar Cerro str. FSL R8-0235] +Sequence ID: KCU90888.1 Length: 560 +>lipoprotein [Salmonella enterica subsp. enterica serovar Heidelberg str. 579083-19] +Sequence ID: KJT54176.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia sp. 93.1462] +Sequence ID: MBB2298101.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia sp. 93.0816] +Sequence ID: MBB2332646.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. CFSAN000532] +Sequence ID: MID56639.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Proteus sp. G2639] +Sequence ID: NBN60372.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. CFSAN000546] +Sequence ID: QUZ65180.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Montevideo str. CFSAN004346] +Sequence ID: QVC04990.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium str. CFSAN000648] +Sequence ID: QVP88396.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Enterobacter sp. EC-NT1] +Sequence ID: RDZ21323.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia sp. MR] +Sequence ID: TKT76466.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Enterococcus durans] +Sequence ID: TVT12099.1 Length: 560 +>PilN type IV pilus secretin [Salmonella enterica subsp. enterica serovar Typhimurium str. STM709] +Sequence ID: CDH80891.1 Length: 560 +>lipoprotein [Plasmid R64] +Sequence ID: BAA77974.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] +Sequence ID: HAE0171083.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Typhisuis] +Sequence ID: HAE1782031.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. salamae serovar 47:a:1,5] +Sequence ID: HAE4725062.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Rough O:-:-] +Sequence ID: HAE6813728.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Casablanca] +Sequence ID: HAU6710689.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Broughton] +Sequence ID: HAU7018575.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli CD340] +Sequence ID: HAX0084632.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli CD505] +Sequence ID: HAX0272621.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Shigella flexneri 1c] +Sequence ID: HAY6193223.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Shigella flexneri 1b] +Sequence ID: HBE0167694.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. diarizonae serovar 61:l,v(z13):1,5,7] +Sequence ID: HBJ6636594.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Jerusalem] +Sequence ID: HBZ1711639.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Paratyphi B var. L-tartrate +] +Sequence ID: HBZ1822710.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. salamae serovar 35:g,m,s,t:-] +Sequence ID: HCA3421744.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O157:H45] +Sequence ID: HCA7285770.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] +Sequence ID: HCG3809509.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium var. monophasic 4,[5],12:i:-] +Sequence ID: HCK2831666.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:559/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EAO8534873.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EEC5620582.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Cerro] +Sequence ID: EHO2039320.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEA+ R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAIAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: HAI6915211.1 Length: 561 +Range 1: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:559/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EHS9585445.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EIN5195638.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EIO4722218.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREK+SALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKISALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: WP_137475301.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EFA3396047.1 Length: 560 +>lipoprotein [Escherichia coli] +Sequence ID: GCV72481.1 Length: 560 +>lipoprotein [Escherichia coli] +Sequence ID: GDA50305.1 Length: 560 +>lipoprotein [Escherichia coli] +Sequence ID: GDB47737.1 Length: 560 +>lipoprotein [Escherichia coli] +Sequence ID: GDC26466.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:559/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVVR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EBI8111515.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQ+ALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQIALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: WP_100535643.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Kentucky] +Sequence ID: PJO88948.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKS+HSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSIHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: WP_001492934.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: ECK6680827.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Chester] +Sequence ID: EDV2683249.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EDK9483790.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EDR8077175.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EFC1098062.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AG+SILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGISILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EEX6119536.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2955), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLS+SNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSISNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EBT9257967.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EER0386512.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EFY7189977.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EHQ4291596.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EHQ4301664.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2954), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLT+NNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTMNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EAP7536521.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2954), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVI+ITPTFPSGGNNG +Sbjct 541 ERSTLVIVITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EAN6212157.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Enteritidis] +Sequence ID: ECZ3526274.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EFC1356146.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EAT7994807.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EAV3045683.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2954), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQE+GQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQEMGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: WP_223350509.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EIX1935700.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: MBZ1430160.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2954), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQE+GQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQEVGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: HAN4138994.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2954), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQ+QMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQMQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Enteritidis] +Sequence ID: EDD0821541.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Infantis] +Sequence ID: EDL8642822.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Enteritidis] +Sequence ID: EGH6528553.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Saintpaul] +Sequence ID: EGX6490409.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2954), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPV+ITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVLITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Infantis] +Sequence ID: EJJ8295379.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2954), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKT+EAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTVEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: ECL7909595.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2954), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCM+AVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMLAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>MULTISPECIES: PilN family type IVB pilus formation outer membrane protein [Enterobacteriaceae] +Sequence ID: WP_054170956.1 Length: 560 +>pilus assembly protein [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: KPE98824.1 Length: 560 +>pilus assembly protein [Klebsiella pneumoniae] +Sequence ID: KSX77661.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: NWG44610.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Klebsiella pneumoniae] +Sequence ID: PAV50295.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: QTH84769.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2954), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGD+NGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDLNGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica] +Sequence ID: EBF8583542.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: EBV1989511.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2953), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVP+AQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPLAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: WP_063119479.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EDI8502530.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Muenchen] +Sequence ID: EHF4692805.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: MBJ4291761.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: AUK04321.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EDO1767149.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2953), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGAT+ +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATA 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: WP_063102673.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2953), Expect:0.0, +Method:Compositional matrix adjust., +Identities:557/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLT+TDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTITDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGAT+ +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATA 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: WP_231828679.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: MCD6936500.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2953), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYK+LHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKALHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: WP_001542528.1 Length: 560 +>R64 PilN family type IVB pilus formation outer membrane protein [Escherichia coli KTE210] +Sequence ID: ELD17995.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2953), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGD+SVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDLSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EAN6056132.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2953), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLL+KALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLMKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EEQ3072566.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2953), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIP+IITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPLIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Infantis] +Sequence ID: ECU1080900.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Infantis] +Sequence ID: ECU1081347.1 Length: 560 +Range 1: 1 to 560 + +Score:1142 bits(2953), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSG+SLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGASLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Shigella sonnei] +Sequence ID: HBH7660684.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASR+GLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRTGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: WP_112901403.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKT+SSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTNSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Derby] +Sequence ID: EDL0974572.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EIR4917118.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: HAG4098466.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: HAG4099626.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQ+TTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQNTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EBC5775852.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Derby] +Sequence ID: EBO8644132.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EFF8741572.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Shigella flexneri] +Sequence ID: HAY8345874.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EEH6957905.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVS+EKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSKEKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EGT2184813.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EIY3811114.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: HBC7495501.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTET+TYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETKTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: WP_069907223.1 Length: 560 +>type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli] +Sequence ID: OEN31714.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASR+GLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRNGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: EBY3089677.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: ECE7981811.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQA+KGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQAKKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EBA9760179.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EGO1652454.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MK+SHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKQSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EGL2462922.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLG+TTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGNTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: WP_097366090.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: PDN35755.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNL+DPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLTDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: WP_208507021.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNN+TTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNSTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Enteritidis] +Sequence ID: EBV3968551.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Manhattan] +Sequence ID: EDQ0867006.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Manhattan] +Sequence ID: EDQ0867880.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKK+TAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKKTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EHI8886624.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTS+D +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSRD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EGO4207310.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEI+LQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEISLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EET3662453.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EIH1354107.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSS+SVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSTSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: WP_195808243.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: MBF7943881.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: MBF7985573.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: MCM5760085.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: HCA6552683.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTS+AGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSQAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: HAN3816316.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTS+QPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSSQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: KAB3069754.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: KAB3085812.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: KAB3100142.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: KAB3100362.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: KAB3114056.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNT+NEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTKNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +Range 2: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNT+NEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTKNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>MULTISPECIES: PilN family type IVB pilus formation outer membrane protein [Enterobacteriaceae] +Sequence ID: WP_032307225.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EAA9462915.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Stanley] +Sequence ID: EBU7841708.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-] +Sequence ID: EBX0542608.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: ECG6321750.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Kentucky] +Sequence ID: ECM4549175.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica] +Sequence ID: ECW0865563.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Montevideo] +Sequence ID: EDE5119005.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Enteritidis] +Sequence ID: EDJ6507341.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli O65] +Sequence ID: EEZ6179397.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Wangata] +Sequence ID: HAU7054211.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREK+QTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKQQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: WP_201481699.1 Length: 560 +>type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli] +Sequence ID: CAD5756789.1 Length: 560 +>type IVB pilus formation outer membrane protein, R64 PilN family [Escherichia coli] +Sequence ID: CAD5759257.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTF+PANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFSPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EGA5010142.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQK+AQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKQAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] +Sequence ID: HAD7041184.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKS+A +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSKA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +Range 2: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKS+A +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSKA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Give] +Sequence ID: ECU4346406.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFD+NNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDKNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: HCE8763740.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: HCH7892003.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:558/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNN MWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNFMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: WP_227898577.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: ECO8723083.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Heidelberg] +Sequence ID: EGI9210475.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNV+VLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVKVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EAW4617119.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EAX5123958.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EAX5208736.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EFH3505133.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EGI4142684.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIP+IITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPMIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>MULTISPECIES: PilN family type IVB pilus formation outer membrane protein [Enterobacteriaceae] +Sequence ID: WP_052935422.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica] +Sequence ID: EAA5225834.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Saintpaul] +Sequence ID: EBF6741780.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Kentucky] +Sequence ID: EBK2291881.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Heidelberg] +Sequence ID: EBK2361454.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: ECK8626385.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Enteritidis] +Sequence ID: ECR6356981.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Infantis] +Sequence ID: ECT1746059.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Curacao] +Sequence ID: ECY4070554.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Braenderup] +Sequence ID: EDR0563852.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN003464] +Sequence ID: EDV0788719.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-] +Sequence ID: EFV0953170.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Shigella sonnei] +Sequence ID: EFX9125189.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Agona] +Sequence ID: EHA3215809.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Klebsiella pneumoniae] +Sequence ID: HCI2397848.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSV+TSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVMTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EIQ3047487.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EIR5517370.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTT+KAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTNKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EFA8762639.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EIR7938988.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFN+TLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNLTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: WP_085008833.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EAM3637862.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EBD3677941.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EBI2147970.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: ECG7999837.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: ECW7181303.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKK+HQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKTHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: HAY3650265.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYT+LRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTRLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: WP_053528518.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EAB5132428.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Derby] +Sequence ID: EBZ4376054.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: EDI3936975.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-] +Sequence ID: EDS0190655.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium var. 5-] +Sequence ID: EDT3736002.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica] +Sequence ID: EED8160582.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Anatum] +Sequence ID: EGI2519857.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTT+KAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTTKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EJN9966433.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGST+TMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTNTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EGK3851626.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSS+SSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSNSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EET0819184.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSV+NTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVNNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EEZ2734660.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EHY5583993.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSG+SLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGTSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Heidelberg] +Sequence ID: EDI2475573.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EDW6496213.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRI+AVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRISAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EIH9330170.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQN+IMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNNIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EAS4357890.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:558/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANST EGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTFEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: WP_054474128.1 Length: 560 +>type IVB pilus formation outer membrane protein%2C R64 PilN family [Escherichia coli] +Sequence ID: CTS85246.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYT+LRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTQLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EIE7879189.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVL+VSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLNVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EJE5324248.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNA+GDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNANGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: WP_047090374.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EAM3311580.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: EBX2100306.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EAQ9848007.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EBK9702106.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EBL1758097.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPL+SLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLNSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica] +Sequence ID: HBD8355522.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKAL+EQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALNEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EFP6689803.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EFY7032309.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EGA0284908.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EGX5848543.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPE+GRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPERGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica] +Sequence ID: EBG3112723.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EDS0994978.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLS+LGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSNLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: WP_001393544.1 Length: 560 +>PilN [Escherichia coli] +Sequence ID: AAT07432.1 Length: 560 +>Lipoprotein [Escherichia coli] +Sequence ID: AOT35635.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EEZ4739584.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EFD3027174.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EFD3050820.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILD+ATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDSATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EGC1493968.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:558/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKK HQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKKHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia albertii] +Sequence ID: WP_149450826.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQN+IMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNTIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EJF3603839.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EJM7023815.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTT+TTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTLTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EEQ2330754.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EEQ2662157.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EET0802278.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EET3221389.1 Length: 560 +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: EFH7354375.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKM+KKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMKKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Escherichia coli] +Sequence ID: MBZ8719225.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2952), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPE+GRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEQGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: HAE6312774.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2951), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:558/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQT YVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTAYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + +>PilN family type IVB pilus formation outer membrane protein [Salmonella enterica] +Sequence ID: EFV1525961.1 Length: 560 +Range 1: 1 to 560 + +Score:1141 bits(2951), Expect:0.0, +Method:Compositional matrix adjust., +Identities:558/560(99%), Positives:559/560(99%), Gaps:0/560(0%) + +Query 1 MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + MKKSHQRSMKLAVLPCMIAVALSISGCT+SEINKMQKKAQEDSAHAREKVSALSARKSQA +Sbjct 1 MKKSHQRSMKLAVLPCMIAVALSISGCTYSEINKMQKKAQEDSAHAREKVSALSARKSQA 60 + +Query 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD +Sbjct 61 LTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQELGQRITAVCGIPVIITPD 120 + +Query 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD +Sbjct 121 AANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTSTQPLTLNNLMWQGDINGLLD 180 + +Query 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA +Sbjct 181 LMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSSSSSVSSGSTSTMGATGGQDNSA 240 + +Query 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVTR 300 + SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAV R +Sbjct 241 SGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGRYWLSASSSTLTVTDTPAVQEAVAR 300 + +Query 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS +Sbjct 301 YVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKSLHSAGATLNNASGDFTGATS 360 + +Query 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA +Sbjct 361 AGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQESTVTNLTPVPIQMADQTVYVA 420 + +Query 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD +Sbjct 421 QSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQLQMNFNLSDPPTIRSFTSKD 480 + +Query 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN +Sbjct 481 GNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTSKAGTFTPANPLFGGSQTGKN 540 + +Query 541 ERSTLVIIITPTFPSGGNNG 560 + ERSTLVIIITPTFPSGGNNG +Sbjct 541 ERSTLVIIITPTFPSGGNNG 560 + + + + + +Query #2: 66626..67063 Query ID: lcl|Query_88896 Length: 145 + +Sequences producing significant alignments: + Scientific Common Max Total Query E Per. Acc. +Description Name Name Taxid Score Score cover Value Ident Len Accession +type IV pilus biogenesis protein PilM [Enterobacteriaceae] Enterobacter... NA 543 291 291 100% 5e-99 100.00 145 WP_000539806.1 +pilus assembly protein PilP [Escherichia coli] Escherichia ... NA 562 290 290 100% 1e-98 99.31 145 EFO3513936.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 290 290 100% 1e-98 99.31 145 WP_097738744.1 +pilus assembly protein PilP [Salmonella enterica] Salmonella e... NA 28901 290 290 100% 1e-98 99.31 145 EBA0762623.1 +pilus assembly protein PilP [Salmonella enterica] Salmonella e... NA 28901 290 290 100% 1e-98 99.31 145 EBN5494500.1 +type IV pilus biogenesis protein PilM [Salmonella enterica... Salmonella e... NA 149539 290 290 100% 2e-98 99.31 145 EDX6031451.1 +TPA: type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 289 289 100% 3e-98 99.31 145 HBH8546681.1 +pilus assembly protein PilP [Salmonella enterica] Salmonella e... NA 28901 289 289 100% 3e-98 99.31 145 EBQ4958793.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 289 289 100% 3e-98 99.31 145 WP_137489560.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 289 289 100% 3e-98 99.31 145 WP_130560743.1 +pilus assembly protein PilP [Salmonella enterica subsp. enteri... Salmonella e... NA 58097 289 289 100% 3e-98 99.31 145 ECG4507397.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 288 288 99% 4e-98 100.00 144 EFE4668436.1 +type IV pilus biogenesis protein PilM [Enterobacteriaceae] Enterobacter... NA 543 288 288 100% 5e-98 99.31 145 WP_000539807.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 288 288 100% 6e-98 99.31 145 EEQ9635926.1 +type IV pilus biogenesis protein PilM [Salmonella enterica] Salmonella e... NA 28901 288 288 100% 7e-98 98.62 145 EEB1481405.1 +TPA: pilus assembly protein PilP [Escherichia coli] Escherichia ... NA 562 288 288 100% 7e-98 98.62 145 HAG8322315.1 +TPA: type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 288 288 100% 7e-98 98.62 145 HBI2883440.1 +type IV pilus biogenesis protein PilM [Salmonella enterica... Salmonella e... NA 363569 288 288 100% 8e-98 98.62 145 EDX2297450.1 +pilus assembly protein PilP [Salmonella enterica] Salmonella e... NA 28901 288 288 100% 8e-98 98.62 145 ECK5322357.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 288 288 100% 8e-98 98.62 145 EFG5129689.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 288 288 100% 8e-98 98.62 145 WP_126119144.1 +type IV pilus biogenesis protein PilM [Salmonella enterica... Salmonella e... NA 595 288 288 100% 8e-98 98.62 145 EHP9233533.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 288 288 100% 8e-98 99.31 145 EES7299384.1 +type IV pilus biogenesis protein PilM [Salmonella enterica] Salmonella e... NA 28901 288 288 100% 9e-98 99.31 148 WP_022630281.1 +type IV pilus biogenesis protein PilM [Salmonella enterica... Salmonella e... NA 149539 288 288 100% 9e-98 98.62 145 EEE5675723.1 +type IV pilus biogenesis protein PilM [Salmonella enterica] Salmonella e... NA 28901 288 288 100% 1e-97 98.62 145 ECR9312843.1 +pilus assembly protein PilP [Salmonella enterica subsp. enteri... Salmonella e... NA 90371 287 287 100% 1e-97 98.62 145 EAY3380675.1 +PilM domain-containing protein [Salmonella enterica] Salmonella e... NA 28901 287 287 100% 1e-97 98.62 145 ECP5666579.1 +type IV pilus biogenesis protein PilM [Salmonella enterica... Salmonella e... NA 353569 287 287 100% 1e-97 98.62 145 EDR9067001.1 +pilus assembly protein PilP [Salmonella enterica subsp. enteri... Salmonella e... NA 1151173 287 287 100% 1e-97 98.62 145 ECS4115803.1 +type IV pilus biogenesis protein PilM [Citrobacter freundii] Citrobacter ... NA 546 287 287 100% 1e-97 98.62 145 WP_181634759.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 287 287 100% 1e-97 98.62 145 EGT2184812.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 287 287 100% 1e-97 98.62 145 EHH6650758.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 287 287 100% 1e-97 98.62 145 WP_206303519.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 287 287 100% 1e-97 99.31 145 WP_001744073.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 287 287 100% 1e-97 98.62 145 EET2472772.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 287 287 100% 1e-97 98.62 145 WP_115333508.1 +pilus assembly protein PilP [Salmonella enterica] Salmonella e... NA 28901 287 287 100% 1e-97 98.62 145 EAB4894025.1 +type IV pilus biogenesis protein PilM [Salmonella enterica... Salmonella e... NA 108619 287 287 100% 2e-97 98.62 145 EIB3280529.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 287 287 100% 2e-97 98.62 145 EFN5821905.1 +pilus assembly protein PilP [Salmonella enterica] Salmonella e... NA 28901 287 574 100% 2e-97 98.62 145 EAU2729335.1 +pilus assembly protein PilP [Escherichia coli] Escherichia ... NA 562 287 287 100% 2e-97 98.62 145 EAC1560935.1 +type IV pilus biogenesis protein PilM [Enterobacteriaceae] Enterobacter... NA 543 287 287 100% 2e-97 98.62 145 WP_023233596.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 287 287 100% 2e-97 98.62 145 EEY9957806.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 287 287 100% 2e-97 98.62 145 EFL4821524.1 +type IV pilus biogenesis protein PilM [Enterobacteriaceae] Enterobacter... NA 543 287 287 100% 2e-97 98.62 145 WP_045715338.1 +type IV pilus biogenesis protein PilM [Salmonella enterica] Salmonella e... NA 28901 287 287 100% 2e-97 98.62 145 EJD0185760.1 +type IV pilus biogenesis protein PilM [Salmonella enterica... Salmonella e... NA 595 286 286 100% 2e-97 98.62 145 EID1527725.1 +type IV pilus biogenesis protein PilM [Salmonella enterica] Salmonella e... NA 28901 286 286 100% 2e-97 98.62 145 EFR6603798.1 +type IV pilus biogenesis protein PilM [Salmonella enterica] Salmonella e... NA 28901 286 286 100% 2e-97 98.62 145 EJD2463779.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 286 286 100% 2e-97 98.62 145 WP_054194113.1 +pilus assembly protein PilP [Salmonella enterica] Salmonella e... NA 28901 286 286 100% 2e-97 98.62 145 EBH5567647.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 286 286 100% 2e-97 98.62 145 WP_088533287.1 +type IV pilus biogenesis protein PilM [Enterobacteriaceae] Enterobacter... NA 543 286 286 100% 2e-97 98.62 145 WP_000539811.1 +pilus assembly protein PilP [Salmonella enterica] Salmonella e... NA 28901 286 286 100% 2e-97 98.62 145 EBA9778213.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 286 286 100% 2e-97 98.62 145 EFE1916126.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 286 286 100% 2e-97 98.62 145 EHX8372608.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 286 286 100% 3e-97 98.62 145 WP_001532561.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 286 286 100% 3e-97 98.62 145 WP_001389072.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 286 286 100% 3e-97 98.62 145 WP_063082014.1 +pilus assembly protein PilP [Salmonella enterica] Salmonella e... NA 28901 286 286 100% 3e-97 98.62 145 EAW3837830.1 +type IV pilus biogenesis protein PilM [Salmonella enterica... Salmonella e... NA 192955 286 286 100% 3e-97 98.62 145 EEE3486426.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 286 286 100% 3e-97 98.62 145 WP_149843645.1 +type IV pilus biogenesis protein PilM [Salmonella enterica] Salmonella e... NA 28901 286 286 100% 3e-97 98.62 145 WP_079830039.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 286 286 100% 3e-97 98.62 145 WP_097463416.1 +pilus assembly protein PilP [Klebsiella pneumoniae] Klebsiella p... NA 573 286 286 100% 3e-97 98.62 145 MBL2713028.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 286 286 100% 3e-97 98.62 145 EFF0478624.1 +pilus assembly protein PilP [Salmonella enterica subsp. enteri... Salmonella e... NA 90371 286 286 100% 3e-97 98.62 145 ECH7902132.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 286 286 100% 3e-97 98.62 145 WP_074516493.1 +type IV pilus biogenesis protein PilM [Enterobacteriaceae] Enterobacter... NA 543 286 286 100% 3e-97 98.62 145 WP_000539809.1 +pilus assembly protein PilP [Escherichia coli] Escherichia ... NA 562 286 286 100% 3e-97 98.62 145 EFA5365952.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 286 286 100% 3e-97 98.62 145 EFG1131328.1 +pilus assembly protein PilP [Salmonella enterica] Salmonella e... NA 28901 286 286 100% 3e-97 98.62 145 EAV6740255.1 +type IV pilus biogenesis protein PilM [Enterobacteriaceae] Enterobacter... NA 543 286 286 100% 3e-97 98.62 145 WP_077128011.1 +pilus assembly protein PilP [Salmonella enterica subsp. enteri... Salmonella e... NA 90371 286 286 100% 3e-97 98.62 145 EDN0218915.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 286 286 100% 3e-97 98.62 145 WP_202791634.1 +type IV pilus biogenesis protein PilM [Salmonella enterica... Salmonella e... NA 28147 286 286 100% 3e-97 98.62 145 EDR6454460.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 286 286 100% 3e-97 98.62 145 WP_097757056.1 +pilus assembly protein PilP [Salmonella enterica subsp. enterica] Salmonella e... NA 59201 286 286 100% 3e-97 98.62 145 EAA8003073.1 +TPA: type IV pilus biogenesis protein PilM [Klebsiella... Klebsiella p... NA 573 286 286 100% 3e-97 98.62 145 HBS5069085.1 +type IV pilus biogenesis protein PilM [Salmonella enterica] Salmonella e... NA 28901 286 286 100% 3e-97 98.62 145 EEI1576447.1 +pilus assembly protein PilP [Salmonella enterica subsp. enteri... Salmonella e... NA 192953 286 286 100% 3e-97 97.93 145 ECF1231706.1 +pilus assembly protein PilP [Salmonella enterica] Salmonella e... NA 28901 286 286 100% 3e-97 98.62 145 EAZ7548080.1 +type IV pilus biogenesis protein PilM [Salmonella enterica... Salmonella e... NA 115981 286 286 100% 3e-97 98.62 145 EDF6601638.1 +type IV pilus biogenesis protein PilM [Salmonella enterica] Salmonella e... NA 28901 286 286 100% 3e-97 98.62 145 WP_119005622.1 +pilus assembly protein PilP [Salmonella enterica] Salmonella e... NA 28901 286 286 100% 3e-97 98.62 145 EAU6153491.1 +pilus assembly protein PilP [Salmonella enterica] Salmonella e... NA 28901 286 286 100% 4e-97 98.62 145 EBD7596760.1 +pilus assembly protein PilP [Salmonella enterica subsp. enteri... Salmonella e... NA 913240 286 286 100% 4e-97 98.62 145 EBY7414597.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 286 286 100% 4e-97 98.62 145 WP_096263940.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 286 286 100% 4e-97 98.62 145 EFM6107350.1 +TPA: type IV pilus biogenesis protein PilM [Shigella sonnei] Shigella sonnei NA 624 286 286 100% 4e-97 98.62 145 HBD6500651.1 +type IV pilus biogenesis protein PilM [Klebsiella pneumoniae] Klebsiella p... NA 573 286 286 100% 4e-97 98.62 145 WP_102000829.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 286 286 100% 4e-97 97.93 145 EHT1890323.1 +type IV pilus biogenesis protein PilM [Salmonella enterica] Salmonella e... NA 28901 286 286 100% 4e-97 97.93 145 ECP9951358.1 +type IV pilus biogenesis protein PilM [Salmonella enterica... Salmonella e... NA 192953 286 286 100% 4e-97 97.93 145 EDD0862144.1 +type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 286 573 100% 4e-97 98.62 145 EFM6784268.1 +TPA: type IV pilus biogenesis protein PilM [Escherichia coli] Escherichia ... NA 562 286 286 100% 4e-97 98.62 145 HAZ5991616.1 +type IV pilus biogenesis protein PilM [Salmonella enterica] Salmonella e... NA 28901 286 286 100% 4e-97 98.62 145 EDZ7401399.1 + + +Alignments: + +>MULTISPECIES: type IV pilus biogenesis protein PilM [Enterobacteriaceae] +Sequence ID: WP_000539806.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Kentucky] +Sequence ID: EBL4342125.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Virchow] +Sequence ID: EBN0038632.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Stanley] +Sequence ID: EBR9347859.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Litchfield] +Sequence ID: EBS2903528.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Kingston] +Sequence ID: EBS4125715.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Kedougou] +Sequence ID: EBU8779706.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Abony] +Sequence ID: EBW4541464.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Mikawasima] +Sequence ID: EBW6466882.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Coeln] +Sequence ID: EBX0138280.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Bareilly] +Sequence ID: EBX0623179.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Schwarzengrund] +Sequence ID: EBX0637211.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Oslo] +Sequence ID: EBX4087280.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Kenya] +Sequence ID: EBX7455045.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Haifa] +Sequence ID: EBY7986858.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Minnesota] +Sequence ID: EBZ8609791.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Mississippi] +Sequence ID: ECA5352213.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Agama] +Sequence ID: ECB3407705.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Kottbus] +Sequence ID: ECB6677823.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Bredeney] +Sequence ID: ECB6722643.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Braenderup] +Sequence ID: ECB7246771.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Javiana] +Sequence ID: ECD1449513.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. houtenae] +Sequence ID: ECI4806908.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Altona] +Sequence ID: ECI8918112.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Diguel] +Sequence ID: ECK9220780.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Derby] +Sequence ID: ECS2505516.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-] +Sequence ID: ECU0341570.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Ridge] +Sequence ID: ECY5732699.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Corvallis] +Sequence ID: EDA8397669.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Muenchen] +Sequence ID: EDB4131049.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Brandenburg] +Sequence ID: EDC7233941.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Senftenberg] +Sequence ID: EDF6374828.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Dublin] +Sequence ID: EDM4451326.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar London] +Sequence ID: EDN3938012.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Oranienburg] +Sequence ID: EDR4428456.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Cerro] +Sequence ID: EDX4097579.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Havana] +Sequence ID: EDX5197548.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Paratyphi A] +Sequence ID: EEO7527227.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O157] +Sequence ID: EEX5266278.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O25] +Sequence ID: EEZ9663408.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli O2] +Sequence ID: EFA4482621.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli O85:H32] +Sequence ID: EFN8571091.1 Length: 145 +>pilus assembly protein PilP [Shigella boydii] +Sequence ID: EFX8634922.1 Length: 145 +>putative conjugational pilus PilM protein [Escherichia coli O104:H4 str. LB226692] +Sequence ID: EGR71213.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Alachua] +Sequence ID: EHG6622140.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Poona] +Sequence ID: EHK4418259.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Eko] +Sequence ID: EHN8859916.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O163:H38] +Sequence ID: EIH1080790.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Agbeni] +Sequence ID: EIP0067622.1 Length: 145 +>pilM family protein [Shigella flexneri CCH060] +Sequence ID: EIQ17473.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Chester] +Sequence ID: EJM1953744.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Heidelberg str. SARA33] +Sequence ID: ERF97067.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Worthington str. BCH-4719] +Sequence ID: KAF0660684.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Worthington str. BCH-5715] +Sequence ID: KAF0787284.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. salamae serovar 47:a:1,5] +Sequence ID: HAE4725061.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Rough O:-:-] +Sequence ID: HAE6813727.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli JJ2591] +Sequence ID: HAX0050683.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Napoli] +Sequence ID: HBB7237065.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Reading] +Sequence ID: HBJ6614351.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Gatuni] +Sequence ID: HBJ6863809.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Choleraesuis] +Sequence ID: HBL1079516.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O25b:H4-ST131] +Sequence ID: HBN3674205.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Jerusalem] +Sequence ID: HBZ1711638.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Miami] +Sequence ID: HCB5543994.1 Length: 145 +Range 1: 1 to 145 + +Score:291 bits(744), Expect:5e-99, +Method:Compositional matrix adjust., +Identities:145/145(100%), Positives:145/145(100%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Escherichia coli] +Sequence ID: EFO3513936.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli] +Sequence ID: EFO3555581.1 Length: 145 +Range 1: 1 to 145 + +Score:290 bits(742), Expect:1e-98, +Method:Compositional matrix adjust., +Identities:144/145(99%), Positives:145/145(100%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRY+SGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYISGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: WP_097738744.1 Length: 145 +Range 1: 1 to 145 + +Score:290 bits(742), Expect:1e-98, +Method:Compositional matrix adjust., +Identities:144/145(99%), Positives:145/145(100%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLW+WMPEQPGLVETLRLKSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWIWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: EBA0762623.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EHA8842788.1 Length: 145 +Range 1: 1 to 145 + +Score:290 bits(742), Expect:1e-98, +Method:Compositional matrix adjust., +Identities:144/145(99%), Positives:145/145(100%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGL+ETLRLKSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLIETLRLKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: EBN5494500.1 Length: 145 +Range 1: 1 to 145 + +Score:290 bits(741), Expect:1e-98, +Method:Compositional matrix adjust., +Identities:144/145(99%), Positives:145/145(100%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIG+FQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGLFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Enteritidis] +Sequence ID: EDX6031451.1 Length: 145 +Range 1: 1 to 145 + +Score:290 bits(741), Expect:2e-98, +Method:Compositional matrix adjust., +Identities:144/145(99%), Positives:145/145(100%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKL+LPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLSLPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: HBH8546681.1 Length: 145 +Range 1: 1 to 145 + +Score:289 bits(739), Expect:3e-98, +Method:Compositional matrix adjust., +Identities:144/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQY SASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYTSASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: EBQ4958793.1 Length: 145 +Range 1: 1 to 145 + +Score:289 bits(739), Expect:3e-98, +Method:Compositional matrix adjust., +Identities:144/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYAS SVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASTSVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: WP_137489560.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: EAM2047297.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Sandiego] +Sequence ID: EDA3111651.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Heidelberg] +Sequence ID: EED3785085.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Anatum] +Sequence ID: EHH2646926.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: EBM2577105.1 Length: 145 +Range 1: 1 to 145 + +Score:289 bits(739), Expect:3e-98, +Method:Compositional matrix adjust., +Identities:144/145(99%), Positives:145/145(100%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQ+MSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQQMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: WP_130560743.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli] +Sequence ID: RZX23424.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli] +Sequence ID: RZX96659.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli] +Sequence ID: TAA50003.1 Length: 145 +Range 1: 1 to 145 + +Score:289 bits(739), Expect:3e-98, +Method:Compositional matrix adjust., +Identities:144/145(99%), Positives:145/145(100%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTP+SRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPNSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Bovismorbificans] +Sequence ID: ECG4507397.1 Length: 145 +Range 1: 1 to 145 + +Score:289 bits(739), Expect:3e-98, +Method:Compositional matrix adjust., +Identities:144/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAV LTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVSLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EFE4668436.1 Length: 144 +Range 1: 1 to 144 + +Score:288 bits(738), Expect:4e-98, +Method:Compositional matrix adjust., +Identities:144/144(100%), Positives:144/144(100%), Gaps:0/144(0%) + +Query 2 GWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQD 61 + GWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQD +Sbjct 1 GWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQD 60 + +Query 62 GVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQLT 121 + GVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQLT +Sbjct 61 GVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQLT 120 + +Query 122 WLSGTATGLTPPAGITAGSVVYVN 145 + WLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 WLSGTATGLTPPAGITAGSVVYVN 144 + + + + +>MULTISPECIES: type IV pilus biogenesis protein PilM [Enterobacteriaceae] +Sequence ID: WP_000539807.1 Length: 145 +>pilM [uncultured bacterium] +Sequence ID: AUF79999.1 Length: 145 +>pilus assembly protein PilP [Klebsiella michiganensis] +Sequence ID: AWT21942.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. diarizonae] +Sequence ID: EAA6549008.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Kottbus] +Sequence ID: EAA7926053.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Agama] +Sequence ID: EBC9853505.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Altona] +Sequence ID: EBD0021719.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Saintpaul str. CFSAN000610] +Sequence ID: EBF8662536.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] +Sequence ID: EBH8118943.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Manhattan] +Sequence ID: EBH9236131.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Tennessee] +Sequence ID: EBL5564297.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Litchfield] +Sequence ID: EBM8608386.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Mikawasima] +Sequence ID: EBQ8698722.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Mississippi] +Sequence ID: EBQ9129365.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Bareilly] +Sequence ID: EBQ9400574.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Telelkebir] +Sequence ID: EBQ9405110.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Falkensee] +Sequence ID: EBR7944571.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Agbeni] +Sequence ID: EBR8787501.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Havana] +Sequence ID: EBR9110901.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Ajiobo] +Sequence ID: EBR9324132.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Javiana] +Sequence ID: EBS1954295.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Livingstone] +Sequence ID: EBS2537681.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Kisangani] +Sequence ID: EBS3117917.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Coeln] +Sequence ID: EBS5328992.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Poona] +Sequence ID: EBS5514989.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Ruiru] +Sequence ID: EBS6309879.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Krefeld] +Sequence ID: EBU7183910.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Ibadan] +Sequence ID: EBU7572337.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Goldcoast] +Sequence ID: EBU7605179.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Stanleyville] +Sequence ID: EBU8168589.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Richmond] +Sequence ID: EBV0789118.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Bovismorbificans] +Sequence ID: EBV4034747.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Virchow] +Sequence ID: EBV5671360.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Emek] +Sequence ID: EBV6517146.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar 4,12:i:-] +Sequence ID: EBV9168510.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Wangata] +Sequence ID: EBW1789225.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Oslo] +Sequence ID: EBW2994536.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Duisburg] +Sequence ID: EBW4307787.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Ituri] +Sequence ID: EBW4694100.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Hull] +Sequence ID: EBW7805945.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Durham] +Sequence ID: EBX0165986.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Bispebjerg] +Sequence ID: EBX0278984.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Chailey] +Sequence ID: EBX2156205.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Sandiego] +Sequence ID: EBX2618202.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Blockley] +Sequence ID: EBX3270864.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Larochelle] +Sequence ID: EBX6543885.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Irumu] +Sequence ID: EBY0416661.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Wien] +Sequence ID: EBY1896823.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Abony] +Sequence ID: EBY3661922.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Isangi] +Sequence ID: EBY7751037.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Aberdeen] +Sequence ID: EBZ8732046.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Idikan] +Sequence ID: ECA7561575.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Glostrup] +Sequence ID: ECA9065039.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Putten] +Sequence ID: ECB5475948.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Banana] +Sequence ID: ECB5600771.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Cairina] +Sequence ID: ECB6818442.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Eko] +Sequence ID: ECB8674716.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Oakland] +Sequence ID: ECD1122343.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Teshie] +Sequence ID: ECD2955759.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Adjame] +Sequence ID: ECD3794212.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Arechavaleta] +Sequence ID: ECD6362504.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Potsdam] +Sequence ID: ECF3904264.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Hato] +Sequence ID: ECG2028860.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Newington] +Sequence ID: ECG5311326.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. salamae] +Sequence ID: ECI4297625.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Bonn] +Sequence ID: ECI6994611.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Telaviv] +Sequence ID: ECI7628279.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Typhisuis str. CFSAN000654] +Sequence ID: ECK9486304.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Colindale] +Sequence ID: ECP0470761.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Meleagridis] +Sequence ID: ECS2400156.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Johannesburg] +Sequence ID: ECS2735087.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Adelaide] +Sequence ID: ECS3333840.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Birkenhead] +Sequence ID: ECS6294855.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Herston] +Sequence ID: ECS6493906.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar O rough] +Sequence ID: ECU9078574.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Gatuni] +Sequence ID: ECU9209297.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Abaetetuba] +Sequence ID: ECV2754822.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Curacao] +Sequence ID: ECY4070553.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Hvittingfoss] +Sequence ID: ECY5087286.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Muenster] +Sequence ID: EDB5463637.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Gaminara] +Sequence ID: EDN4846497.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN003485] +Sequence ID: EDP9505192.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Senegal] +Sequence ID: EDQ4838402.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Lille] +Sequence ID: EDR0208465.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Cubana] +Sequence ID: EDR0618639.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar 6,7:-:1,5] +Sequence ID: EDR3368718.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar 9,12:-:1,5] +Sequence ID: EDR5491627.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Copenhagen] +Sequence ID: EDR9700229.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar 4,[5],12:b:-] +Sequence ID: EDR9822825.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Tallahassee] +Sequence ID: EDS3275223.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN003465] +Sequence ID: EDS5307635.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Pomona] +Sequence ID: EDT1205712.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN003460] +Sequence ID: EDT8781974.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Norwich] +Sequence ID: EDU4385887.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Duesseldorf] +Sequence ID: EDU6092458.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Kiambu] +Sequence ID: EDU6197227.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN003486] +Sequence ID: EDV0706606.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN003464] +Sequence ID: EDV0788718.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN003484] +Sequence ID: EDV0891068.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. houtenae] +Sequence ID: EDV2947319.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Baildon] +Sequence ID: EDV9539938.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN003470] +Sequence ID: EDV9755213.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN003468] +Sequence ID: EDW2514702.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN003476] +Sequence ID: EDW2542563.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Kenya] +Sequence ID: EDX3803209.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Alabama] +Sequence ID: EDX7317105.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Liverpool] +Sequence ID: EED8922434.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Durban] +Sequence ID: EEE0610983.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Okatie] +Sequence ID: EEE5081649.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Kalamu] +Sequence ID: EEF3438537.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN003469] +Sequence ID: EEJ3434399.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN003477] +Sequence ID: EEJ7258939.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Lexington var. 15+] +Sequence ID: EEJ9110125.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Panama] +Sequence ID: EEN5815767.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O156:H25] +Sequence ID: EEW3510010.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli O21:H28] +Sequence ID: EEY7914904.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O20] +Sequence ID: EEZ5651982.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O2] +Sequence ID: EEZ5671775.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O8] +Sequence ID: EEZ5676319.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O25] +Sequence ID: EEZ5681349.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O15] +Sequence ID: EEZ5757252.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O101] +Sequence ID: EEZ5762059.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O105] +Sequence ID: EEZ5806332.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O19] +Sequence ID: EEZ5978629.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O117] +Sequence ID: EEZ6010117.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O171] +Sequence ID: EEZ6015951.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O21] +Sequence ID: EEZ6034589.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O1] +Sequence ID: EEZ6058047.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O65] +Sequence ID: EEZ6179396.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O120] +Sequence ID: EEZ7095743.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O160] +Sequence ID: EEZ8618794.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O78] +Sequence ID: EEZ8718284.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O150] +Sequence ID: EEZ9006506.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O57:H16] +Sequence ID: EEZ9011251.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O32] +Sequence ID: EEZ9625129.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O13] +Sequence ID: EFA4129689.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O15:H21] +Sequence ID: EFA4157626.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O2:H32] +Sequence ID: EFA4204075.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli O53] +Sequence ID: EFA5375387.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O39:H4] +Sequence ID: EFA8806486.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O74] +Sequence ID: EFA8815170.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O100] +Sequence ID: EFB4131087.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O113] +Sequence ID: EFB4145432.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O128] +Sequence ID: EFB4150387.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O8:H8] +Sequence ID: EFE1033254.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli O21:H34] +Sequence ID: EFN7222565.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli O26:H32] +Sequence ID: EFN7232720.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli O43:H2] +Sequence ID: EFN7255689.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli O162:H9] +Sequence ID: EFN7261365.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli O145] +Sequence ID: EFN8423789.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli O68] +Sequence ID: EFN8432734.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli O53:H10] +Sequence ID: EFN8590682.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli H8] +Sequence ID: EFN8617312.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Ank] +Sequence ID: EGF1547329.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Carrau] +Sequence ID: EGI5840568.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Paratyphi A] +Sequence ID: EGI6604319.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Stourbridge] +Sequence ID: EGJ7183054.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Nima] +Sequence ID: EGS0286505.1 Length: 145 +>pilM family protein [Escherichia coli 3030-1] +Sequence ID: EGW78954.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Shubra] +Sequence ID: EHA9184990.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. houtenae serovar 50:g,z51:-] +Sequence ID: EHD0028020.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Barranquilla] +Sequence ID: EHF3290371.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar 4,5,12:b:-] +Sequence ID: EHF4380777.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Cannstatt] +Sequence ID: EHH2611738.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Rough:r:-] +Sequence ID: EHM1798202.1 Length: 145 +>hypothetical protein HMPREF0986_04776 [Escherichia coli 4_1_47FAA] +Sequence ID: EHP63121.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Concord] +Sequence ID: EIG0750834.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O55] +Sequence ID: EIH0606165.1 Length: 145 +>pilin inner membrane protein PilM [Escherichia coli 4.0967] +Sequence ID: EII31748.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Ridge] +Sequence ID: EIO0852954.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Amsterdam] +Sequence ID: EJA9513787.1 Length: 145 +>hypothetical protein WC5_00044 [Escherichia sp. KTE114] +Sequence ID: EOU50266.1 Length: 145 +>PilM protein [Salmonella enterica subsp. enterica serovar Heidelberg str. N4403] +Sequence ID: EYH79360.1 Length: 145 +>PilM protein [Salmonella enterica subsp. enterica serovar Heidelberg str. N189] +Sequence ID: EYH94149.1 Length: 145 +>PilM type IV pilus biogenesis protein [Salmonella enterica subsp. enterica serovar Heidelberg str. 41576] +Sequence ID: EYI44327.1 Length: 145 +>pilus protein [Salmonella enterica subsp. enterica serovar Heidelberg str. 579083-19] +Sequence ID: KJT54177.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Newport str. L0167] +Sequence ID: KSB83303.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia sp. 93.1462] +Sequence ID: MBB2298100.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia sp. 93.0816] +Sequence ID: MBB2332645.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O157:H7 str. EC10] +Sequence ID: MBD3065937.1 Length: 145 +>type IV pilus biogenesis protein PilM [Proteus sp. G2639] +Sequence ID: NBN60371.1 Length: 145 +>type IV pilus biogenesis protein PilM [Enterobacter hormaechei] +Sequence ID: QLW09252.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Typhimurium str. CFSAN000648] +Sequence ID: QVP88397.1 Length: 145 +>pilus assembly protein PilP [Enterobacter sp. EC-NT1] +Sequence ID: RDZ21324.1 Length: 145 +>pilus assembly protein PilP [Escherichia sp. MR] +Sequence ID: TKT76467.1 Length: 145 +>pilus assembly protein PilP [Enterococcus durans] +Sequence ID: TVT12100.1 Length: 145 +>conjugal transfer protein PilM [Salmonella enterica subsp. enterica serovar Typhimurium str. STM709] +Sequence ID: CDH80892.1 Length: 145 +>pilM [Plasmid R64] +Sequence ID: BAA77973.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] +Sequence ID: HAE0171082.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Typhisuis] +Sequence ID: HAE1782030.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Casablanca] +Sequence ID: HAU6710688.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Broughton] +Sequence ID: HAU7018574.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli CD340] +Sequence ID: HAX0084633.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli CD505] +Sequence ID: HAX0272620.1 Length: 145 +>type IV pilus biogenesis protein PilM [Shigella flexneri 1c] +Sequence ID: HAY6193222.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Choleraesuis] +Sequence ID: HBJ2957613.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. diarizonae serovar 61:l,v(z13):1,5,7] +Sequence ID: HBJ6636593.1 Length: 145 +>type IV pilus biogenesis protein PilM [Citrobacter freundii] +Sequence ID: HBV7425793.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Paratyphi B var. L-tartrate +] +Sequence ID: HBZ1822709.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O157:H45] +Sequence ID: HCA7285769.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Typhi str. AG3] +Sequence ID: HCG3809508.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Typhimurium var. monophasic 4,[5],12:i:-] +Sequence ID: HCK2831665.1 Length: 145 +Range 1: 1 to 145 + +Score:288 bits(738), Expect:5e-98, +Method:Compositional matrix adjust., +Identities:144/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EEQ9635926.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EER0165341.1 Length: 145 +>type IV pilus biogenesis protein PilM [Shigella sonnei] +Sequence ID: EFP6131934.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: HBH7145446.1 Length: 145 +Range 1: 1 to 145 + +Score:288 bits(737), Expect:6e-98, +Method:Compositional matrix adjust., +Identities:144/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGL PPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLPPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: EEB1481405.1 Length: 145 +Range 1: 1 to 145 + +Score:288 bits(737), Expect:7e-98, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGV+SSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVVSSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Escherichia coli] +Sequence ID: HAG8322315.1 Length: 145 +Range 1: 1 to 145 + +Score:288 bits(737), Expect:7e-98, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAG+TAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGVTAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: HBI2883440.1 Length: 145 +Range 1: 1 to 145 + +Score:288 bits(737), Expect:7e-98, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIG+FQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGVFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Javiana] +Sequence ID: EDX2297450.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: EIN3293599.1 Length: 145 +Range 1: 1 to 145 + +Score:288 bits(736), Expect:8e-98, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASAS+WASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASIWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: ECK5322357.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Newport] +Sequence ID: ECM7722605.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EHR8640163.1 Length: 145 +Range 1: 1 to 145 + +Score:288 bits(736), Expect:8e-98, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMA+GLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAIGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EFG5129689.1 Length: 145 +Range 1: 1 to 145 + +Score:288 bits(736), Expect:8e-98, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRY+SGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYISGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: WP_126119144.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Enteritidis] +Sequence ID: ECD5646752.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: ECF3349782.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: EIK4947206.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: ECF3781801.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EEX8067724.1 Length: 145 +Range 1: 1 to 145 + +Score:288 bits(736), Expect:8e-98, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLW+WMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWIWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Infantis] +Sequence ID: EHP9233533.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: EIW9695724.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: MBS8586894.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli] +Sequence ID: HAH3081904.1 Length: 145 +Range 1: 1 to 145 + +Score:288 bits(736), Expect:8e-98, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGS+VYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSIVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EES7299384.1 Length: 145 +Range 1: 1 to 145 + +Score:288 bits(736), Expect:8e-98, +Method:Compositional matrix adjust., +Identities:144/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLT PAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTHPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM, partial [Salmonella enterica] +Sequence ID: WP_022630281.1 Length: 148 +>pilus assembly protein PilP, partial [Salmonella enterica subsp. enterica serovar Kentucky str. 13562] +Sequence ID: ERN61629.1 Length: 148 +Range 1: 4 to 148 + +Score:288 bits(736), Expect:9e-98, +Method:Compositional matrix adjust., +Identities:144/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 4 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 63 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 64 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 123 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 124 TWLSGTATGLTPPAGITAGSVVYVN 148 + + + + +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Enteritidis] +Sequence ID: EEE5675723.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Enteritidis] +Sequence ID: EGW2688084.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Enteritidis] +Sequence ID: EHG6874764.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Enteritidis] +Sequence ID: EHG6951092.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Enteritidis] +Sequence ID: EHH0917442.1 Length: 145 +Range 1: 1 to 145 + +Score:288 bits(736), Expect:9e-98, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATG+TPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGMTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: ECR9312843.1 Length: 145 +Range 1: 1 to 145 + +Score:288 bits(736), Expect:1e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKH+LQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHELQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: EAY3380675.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: ECQ4003322.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: EJD3445901.1 Length: 145 +Range 1: 1 to 145 + +Score:287 bits(735), Expect:1e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIG+FQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGLFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>PilM domain-containing protein [Salmonella enterica] +Sequence ID: ECP5666579.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: ECQ2771153.1 Length: 145 +Range 1: 1 to 145 + +Score:287 bits(735), Expect:1e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIAN+INDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANKINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar 4,12:i:-] +Sequence ID: EDR9067001.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-] +Sequence ID: EDT6115373.1 Length: 145 +Range 1: 1 to 145 + +Score:287 bits(735), Expect:1e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQI+MIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQIIMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Altona] +Sequence ID: ECS4115803.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: EID3931386.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: EID3932338.1 Length: 145 +Range 1: 1 to 145 + +Score:287 bits(735), Expect:1e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIF+NGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFKNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Citrobacter freundii] +Sequence ID: WP_181634759.1 Length: 145 +>type IV pilus biogenesis protein PilM [Citrobacter freundii] +Sequence ID: QMA45091.1 Length: 145 +Range 1: 1 to 145 + +Score:287 bits(735), Expect:1e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQN+KMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNKKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EGT2184812.1 Length: 145 +Range 1: 1 to 145 + +Score:287 bits(735), Expect:1e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQ+YASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQKYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EHH6650758.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EHN1978094.1 Length: 145 +Range 1: 1 to 145 + +Score:287 bits(735), Expect:1e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPG VETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGFVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: WP_206303519.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: MBN6377296.1 Length: 145 +Range 1: 1 to 145 + +Score:287 bits(735), Expect:1e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DG+ISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGLISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: WP_001744073.1 Length: 145 +>pilM family protein [Escherichia coli ThroopD] +Sequence ID: EMW95654.1 Length: 145 +Range 1: 1 to 145 + +Score:287 bits(735), Expect:1e-97, +Method:Compositional matrix adjust., +Identities:144/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGI QNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGISQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EET2472772.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: EJO4161549.1 Length: 145 +Range 1: 1 to 145 + +Score:287 bits(735), Expect:1e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYAS+SVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASSSVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: WP_115333508.1 Length: 145 +>PilM protein [Escherichia coli] +Sequence ID: STO41326.1 Length: 145 +Range 1: 1 to 145 + +Score:287 bits(735), Expect:1e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPP+GITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPSGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: EAB4894025.1 Length: 145 +Range 1: 1 to 145 + +Score:287 bits(735), Expect:1e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKL+LPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLSLPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Newport] +Sequence ID: EIB3280529.1 Length: 145 +Range 1: 1 to 145 + +Score:287 bits(734), Expect:2e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQL QGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLHQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EFN5821905.1 Length: 145 +Range 1: 1 to 145 + +Score:287 bits(734), Expect:2e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWAS ILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASHILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: EAU2729335.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: EBL9507675.1 Length: 145 +Range 1: 1 to 145 + +Score:287 bits(734), Expect:2e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGS VYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSFVYVN 145 + + + + +Range 2: 1 to 145 + +Score:287 bits(734), Expect:2e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGS VYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSFVYVN 145 + + + + +>pilus assembly protein PilP [Escherichia coli] +Sequence ID: EAC1560935.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli] +Sequence ID: EEW1928519.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli] +Sequence ID: EEY5786252.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli] +Sequence ID: EEY5853717.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EFA4109319.1 Length: 145 +Range 1: 1 to 145 + +Score:287 bits(734), Expect:2e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRIN+IRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINEIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>MULTISPECIES: type IV pilus biogenesis protein PilM [Enterobacteriaceae] +Sequence ID: WP_023233596.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: EAZ9634765.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Dublin] +Sequence ID: EBB4444952.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Montevideo] +Sequence ID: EBC9672994.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Newport] +Sequence ID: EBK6433686.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Enteritidis] +Sequence ID: EDD0350305.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Give] +Sequence ID: EDM7998161.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Anatum] +Sequence ID: EDW3104352.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Cerro str. 5569] +Sequence ID: ETC74515.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Montevideo str. CFSAN004346] +Sequence ID: QVC04989.1 Length: 145 +Range 1: 1 to 145 + +Score:287 bits(734), Expect:2e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGV SSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVTSSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EEY9957806.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EFA3901240.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EFA3919795.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EGP6939752.1 Length: 145 +Range 1: 1 to 145 + +Score:287 bits(734), Expect:2e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMS+TTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSDTTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EFL4821524.1 Length: 145 +Range 1: 1 to 145 + +Score:287 bits(734), Expect:2e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLV+TLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVKTLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>MULTISPECIES: type IV pilus biogenesis protein PilM [Enterobacteriaceae] +Sequence ID: WP_045715338.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica] +Sequence ID: EBP3729014.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Typhimurium var. 5-] +Sequence ID: EBW8474771.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Kentucky] +Sequence ID: ECA0614585.1 Length: 145 +>PilM domain-containing protein [Salmonella enterica subsp. enterica serovar Infantis] +Sequence ID: ECM0602579.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Heidelberg] +Sequence ID: ECW5824722.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: EDH6971490.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Litchfield] +Sequence ID: EDI1766304.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Montevideo] +Sequence ID: EDN3119583.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Braenderup] +Sequence ID: EDR1498445.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Mbandaka] +Sequence ID: EDR6047042.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Mississippi] +Sequence ID: EDW7072645.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Agona] +Sequence ID: EHS5207095.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Worthington] +Sequence ID: HBJ6645591.1 Length: 145 +Range 1: 1 to 145 + +Score:287 bits(734), Expect:2e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITG+YQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGNYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: EJD0185760.1 Length: 145 +Range 1: 1 to 145 + +Score:287 bits(734), Expect:2e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR K+RGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKNRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Infantis] +Sequence ID: EID1527725.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:2e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTAT LTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATALTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: EFR6603798.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:2e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYAS SVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASTSVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: EJD2463779.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:2e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGIT GSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITTGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: WP_054194113.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: EAX8378371.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Infantis] +Sequence ID: EBE4023349.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Braenderup] +Sequence ID: ECA2925255.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Corvallis] +Sequence ID: ECA6502334.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Enteritidis] +Sequence ID: ECB6534598.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica] +Sequence ID: ECQ1069931.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: ECX5554888.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Stanley] +Sequence ID: EDJ2830945.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-] +Sequence ID: EEI9283449.1 Length: 145 +>type IV pilus biogenesis protein PilM [Citrobacter koseri] +Sequence ID: HBC8647508.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:2e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTN QQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNTQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: EBH5567647.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: ECQ8495053.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EHL5782146.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: EIR2822044.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:2e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGT TGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTTTGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: WP_088533287.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: EAR3058422.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: EDE2185661.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: EGK6400648.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EHO7059180.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EHP1321581.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:2e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMI NRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMITNRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>MULTISPECIES: type IV pilus biogenesis protein PilM [Enterobacteriaceae] +Sequence ID: WP_000539811.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] +Sequence ID: EBH8171850.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Java] +Sequence ID: EBQ9657717.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Bovismorbificans] +Sequence ID: EBR9036014.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Stanley] +Sequence ID: EBS3005780.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Richmond] +Sequence ID: EBS3504447.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Oranienburg] +Sequence ID: EBS3966607.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Sandiego] +Sequence ID: EBS4768509.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Braenderup] +Sequence ID: EBS5549030.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Uganda] +Sequence ID: EBU9686767.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Ealing] +Sequence ID: EBV1153283.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Agbeni] +Sequence ID: EBV2088013.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Agama] +Sequence ID: EBV3880121.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Virchow] +Sequence ID: EBV4426205.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Ibadan] +Sequence ID: EBW2780860.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Alachua] +Sequence ID: EBW4391924.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Amsterdam] +Sequence ID: EBW5440646.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Oslo] +Sequence ID: EBX0890561.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Kingston] +Sequence ID: EBX2520009.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Abony] +Sequence ID: EBX4621304.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Poona] +Sequence ID: EBX5148492.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Gatuni] +Sequence ID: EBX5878465.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Haifa] +Sequence ID: EBY5426192.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Coeln] +Sequence ID: EBZ0623946.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Kisangani] +Sequence ID: ECB2408717.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Javiana] +Sequence ID: ECB7274338.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Ajiobo] +Sequence ID: ECD0255042.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Papuana] +Sequence ID: ECD0768457.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. salamae] +Sequence ID: ECD9453453.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Mishmarhaemek] +Sequence ID: ECF0536713.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Montevideo] +Sequence ID: ECF0835109.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Hadar] +Sequence ID: ECG2675733.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Tchad] +Sequence ID: ECG3414593.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Abaetetuba] +Sequence ID: ECG5420808.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. houtenae] +Sequence ID: ECJ2300310.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Give] +Sequence ID: ECM8030312.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Typhimurium var. 5-] +Sequence ID: ECS2188610.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Urbana] +Sequence ID: ECS4147625.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Litchfield] +Sequence ID: ECT3738446.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Chester] +Sequence ID: ECT6751614.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Havana] +Sequence ID: ECU2808761.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Paratyphi B str. CFSAN000547] +Sequence ID: ECU9436482.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Schwarzengrund] +Sequence ID: EDA6223584.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Altona] +Sequence ID: EDB5794283.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Amager] +Sequence ID: EDD8811528.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Senftenberg] +Sequence ID: EDF6235597.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Mikawasima] +Sequence ID: EDH1175534.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Duesseldorf] +Sequence ID: EDH5433127.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Bareilly] +Sequence ID: EDI5855954.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Kottbus] +Sequence ID: EDL0132954.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Adjame] +Sequence ID: EDM3877012.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Reading] +Sequence ID: EDP1034523.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Irumu] +Sequence ID: EDP9439375.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Worthington] +Sequence ID: EDQ0754137.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Kiambu] +Sequence ID: EDQ7611355.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Norwich] +Sequence ID: EDR1276100.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Cerro] +Sequence ID: EDR6155976.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Hato] +Sequence ID: EDR7442782.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Johannesburg] +Sequence ID: EDS7113157.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Baildon] +Sequence ID: EDT0023275.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Albert] +Sequence ID: EDT4373592.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar 6,7:-:1,5] +Sequence ID: EDT4542046.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Orion] +Sequence ID: EDT9489118.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Ruiru] +Sequence ID: EDU1312277.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Mbandaka] +Sequence ID: EDU4085973.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Glostrup] +Sequence ID: EDU7668458.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Berta] +Sequence ID: EDV7803872.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Thompson] +Sequence ID: EDW2600394.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Emek] +Sequence ID: EDW8103190.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Ohio] +Sequence ID: EDX1985503.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. arizonae] +Sequence ID: EDX6255930.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar 4,[5],12:b:-] +Sequence ID: EDX6597395.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Hvittingfoss] +Sequence ID: EED2664159.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Duval] +Sequence ID: EED9561365.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Miami] +Sequence ID: EEE1039240.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Dublin] +Sequence ID: EEL5701229.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O5] +Sequence ID: EEZ5661797.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O25] +Sequence ID: EEZ5691178.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O74] +Sequence ID: EFB4182741.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O157] +Sequence ID: EFE1062346.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli O8] +Sequence ID: EFO2072404.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Larochelle] +Sequence ID: EGI6486049.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. houtenae serovar 48:g,z51:-] +Sequence ID: EHG4292381.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella bongori] +Sequence ID: EHM2231072.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Stanleyville] +Sequence ID: EIT9256874.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Eko] +Sequence ID: EIZ8008373.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli O157:H7 str. 2009EL1449] +Sequence ID: EZE80687.1 Length: 145 +>type IV pilus biogenesis protein PilM [Enterobacteriaceae bacterium TzEc077] +Sequence ID: KAE9700970.1 Length: 145 +>pilus protein [Salmonella enterica subsp. enterica serovar Heidelberg str. 77-1831] +Sequence ID: KJT99470.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Paratyphi B str. CFSAN000532] +Sequence ID: MID56638.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Paratyphi B str. CFSAN000546] +Sequence ID: QUZ65179.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Panama] +Sequence ID: HAC6821753.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] +Sequence ID: HAD6703908.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O25b:H4-ST131] +Sequence ID: HAN3192847.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Wangata] +Sequence ID: HAU7136256.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Okatie] +Sequence ID: HBJ6441633.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. salamae serovar 35:g,m,s,t:-] +Sequence ID: HCA3421743.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:2e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQ+MSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQQMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: EBA9778213.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: ECS6511841.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EIE3023588.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: EBQ3314905.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: ECX8155522.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:2e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLV+AVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVVAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EFE1916126.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:2e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVW+PEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWVPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EHX8372608.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:2e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPP GITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPEGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: WP_001532561.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-] +Sequence ID: EDS4846851.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: EEH8828954.1 Length: 145 +>pilM family protein [Escherichia coli P0302293.2] +Sequence ID: EMX15109.1 Length: 145 +>pilM family protein [Escherichia coli P0302293.7] +Sequence ID: ENE01323.1 Length: 145 +>pilM family protein [Escherichia coli P0302293.3] +Sequence ID: ENE18646.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITA SVVYVN +Sbjct 121 TWLSGTATGLTPPAGITASSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: WP_001389072.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: EBD5361883.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EEV1736765.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli] +Sequence ID: EFB3552468.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EFB4574357.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: EGO3868564.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIIT SYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITSSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: WP_063082014.1 Length: 145 +>pilus assembly protein PilP [Shigella sonnei] +Sequence ID: EAA3140571.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Mbandaka] +Sequence ID: EBW3228411.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Oslo] +Sequence ID: ECB6052340.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: ECM9368210.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Infantis] +Sequence ID: EDM1222787.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTAT LTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATSLTPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: EAW3837830.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EHH5679700.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAV LTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVSLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Kentucky] +Sequence ID: EEE3486426.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVS QQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSSQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: WP_149843645.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli] +Sequence ID: KAA2017989.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPA ITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPASITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: WP_079830039.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli] +Sequence ID: EEW2167890.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EFM0447439.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EGI6803258.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EJD8646584.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EJG9982679.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSR SALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRSSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: WP_097463416.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Java] +Sequence ID: EBV1595545.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: HAJ8345017.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVW+PEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWIPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Klebsiella pneumoniae] +Sequence ID: MBL2713028.1 Length: 145 +>pilus assembly protein PilP [Klebsiella pneumoniae] +Sequence ID: MBL2742051.1 Length: 145 +>pilus assembly protein PilP [Klebsiella pneumoniae] +Sequence ID: MBL2774061.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGL PPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLKPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EFF0478624.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQK+SETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKISETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: ECH7902132.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EFR2286214.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EHW4806512.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKL LPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLVLPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: WP_074516493.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: EBU8358908.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Enteritidis] +Sequence ID: EDD7891524.1 Length: 145 +>pilus assembly protein PilP [Shigella sonnei] +Sequence ID: EFX6857571.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: EHK0077444.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: EBW4073607.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQY SASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYVSASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>MULTISPECIES: type IV pilus biogenesis protein PilM [Enterobacteriaceae] +Sequence ID: WP_000539809.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: EAR5150644.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica] +Sequence ID: EAW2083476.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Newport] +Sequence ID: EBR9462632.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: EDA1425875.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Agona] +Sequence ID: EDI4572234.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Java] +Sequence ID: EDT3009913.1 Length: 145 +>pilus assembly protein PilP [Shigella sonnei] +Sequence ID: EFX7324445.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Litchfield] +Sequence ID: EHT2441984.1 Length: 145 +>pilus assembly protein PilP [Klebsiella pneumoniae] +Sequence ID: HBX4958131.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVW SQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWVSQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Escherichia coli] +Sequence ID: EFA5365952.1 Length: 145 +>pilus assembly protein PilP [Escherichia coli O6] +Sequence ID: EFA5393686.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: HBE3000795.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVM VGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMVVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EFG1131328.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: HCB9864510.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYAS SVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASVSVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: EAV6740255.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: EFO9779283.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EFQ3856254.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EGE7461781.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli O157] +Sequence ID: HAG7087027.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTN QQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNVQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>MULTISPECIES: type IV pilus biogenesis protein PilM [Enterobacteriaceae] +Sequence ID: WP_077128011.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica] +Sequence ID: EAC0464782.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: EAO3469225.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Abony] +Sequence ID: EBS6067419.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Litchfield] +Sequence ID: EBY9595872.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Kiambu] +Sequence ID: EBZ7171091.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Napoli] +Sequence ID: ECD2928294.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Newport] +Sequence ID: ECZ9054668.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Shubra] +Sequence ID: EDE8386076.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. houtenae] +Sequence ID: EDR7168398.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: EEC6304131.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Infantis] +Sequence ID: EEM8366625.1 Length: 145 +>pilus assembly protein PilP [Shigella flexneri] +Sequence ID: EGD9288971.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Java] +Sequence ID: EGL3975732.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Eboko] +Sequence ID: EGR9368826.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Bovismorbificans] +Sequence ID: EIN0556270.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Saintpaul] +Sequence ID: EIT2485558.1 Length: 145 +>type IV pilus biogenesis protein PilM [Klebsiella pneumoniae] +Sequence ID: MBD7195387.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Choleraesuis] +Sequence ID: HBL1106575.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGT TGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTVTGLTPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: EDN0218915.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + WLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 AWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: WP_202791634.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EHY2955992.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: MBL4163836.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTA GLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTAAGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Oranienburg] +Sequence ID: EDR6454460.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: MBB0453432.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTP+SRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPNSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: WP_097757056.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: HAH2029983.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGL PPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLNPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Salmonella enterica subsp. enterica] +Sequence ID: EAA8003073.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Rissen] +Sequence ID: EBO2991784.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: ECX1283260.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EHK4129299.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Typhimurium] +Sequence ID: EDN4086635.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(733), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDS+IKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSQIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Klebsiella pneumoniae] +Sequence ID: HBS5069085.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(732), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIA+RINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIASRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: EEI1576447.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EET0747748.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EET5099553.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EIR0054276.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(732), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRI+DIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRISDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Stanley] +Sequence ID: ECF1231706.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(732), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:142/145(98%), Positives:144/145(99%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQ+MSETTNAQQYASASVWASQILMIANR+NDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQQMSETTNAQQYASASVWASQILMIANRVNDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: EAZ7548080.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: EGW3417896.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(732), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KS GSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSHGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Montevideo] +Sequence ID: EDF6601638.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(732), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQG LWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGHLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: WP_119005622.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: EIL0147615.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(732), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETL KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLHSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: EAU6153491.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica] +Sequence ID: EGG8833291.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EHC5115063.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(732), Expect:3e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVW PEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWTPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Salmonella enterica] +Sequence ID: EBD7596760.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(732), Expect:4e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGW VMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWQVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Alachua] +Sequence ID: EBY7414597.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Alachua] +Sequence ID: ECB6473795.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(732), Expect:4e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATG TPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGQTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: WP_096263940.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica] +Sequence ID: EAA6511040.1 Length: 145 +>pilus assembly protein PilP [Salmonella enterica subsp. enterica serovar Oranienburg] +Sequence ID: ECB3497689.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica serovar Enteritidis] +Sequence ID: EEA9574846.1 Length: 145 +>type IV pilus biogenesis protein PilM [Salmonella enterica subsp. enterica] +Sequence ID: EDZ4223783.1 Length: 145 +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: MBN6415002.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(732), Expect:4e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYA ASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYAGASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + + + + +>type IV pilus biogenesis protein PilM [Escherichia coli] +Sequence ID: EFM6107350.1 Length: 145 +Range 1: 1 to 145 + +Score:286 bits(732), Expect:4e-97, +Method:Compositional matrix adjust., +Identities:143/145(99%), Positives:143/145(98%), Gaps:0/145(0%) + +Query 1 MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + MGWLVMAVGLTILIITGSYQNQKMSE TNAQQYASASVWASQILMIANRINDIRYVSGQQ +Sbjct 1 MGWLVMAVGLTILIITGSYQNQKMSEITNAQQYASASVWASQILMIANRINDIRYVSGQQ 60 + +Query 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRLKSRGSALIGIFQNGQL 120 + DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLR KSRGSALIGIFQNGQL +Sbjct 61 DGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETLRSKSRGSALIGIFQNGQL 120 + +Query 121 TWLSGTATGLTPPAGITAGSVVYVN 145 + TWLSGTATGLTPPAGITAGSVVYVN +Sbjct 121 TWLSGTATGLTPPAGITAGSVVYVN 145 From ed6960852eaeae18d9132772ad419ea00a05951d Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Tue, 17 Oct 2023 17:06:20 +0400 Subject: [PATCH 51/64] Update 'dna_rna_tools_utils.py' for better PEP8-style --- gene_code_utils/dna_rna_tools_utils.py | 40 +++++++++++++------------- 1 file changed, 20 insertions(+), 20 deletions(-) diff --git a/gene_code_utils/dna_rna_tools_utils.py b/gene_code_utils/dna_rna_tools_utils.py index ac6db9c..754f87e 100644 --- a/gene_code_utils/dna_rna_tools_utils.py +++ b/gene_code_utils/dna_rna_tools_utils.py @@ -1,7 +1,7 @@ from typing import List, Union -DNA = set ('ATGCatgc') -RNA = set ('AUGCaugc') +DNA = set("ATGCatgc") +RNA = set("AUGCaugc") TRANSCRIPTION_TABLE = { "a": "a", "A": "A", "t": "u", "T": "U", @@ -53,21 +53,21 @@ def type_rna_or_dna(seqs: List[str]) -> str: counter_dna = 0 counter_rna = 0 ambigiuos = 0 - for i in seqs: - if is_dna(i) and is_rna(i): - ambigiuos = ambigiuos+1 + for nucl in seqs: + if is_dna(nucl) and is_rna(nucl): + ambigiuos = ambigiuos + 1 else: - if is_dna(i): - counter_dna=counter_dna+1 - elif is_rna(i): - counter_rna=counter_rna+1 - if (counter_dna + ambigiuos) == len(seqs): - print('You have ', ambigiuos, ' ambigious NA. I suppose they are DNA') + if is_dna(nucl): + counter_dna=counter_dna + 1 + elif is_rna(nucl): + counter_rna=counter_rna + 1 + if counter_dna + ambigiuos == len(seqs): + print(f'You have {ambigiuos} ambigious NA. I suppose they are DNA') return "DNA" - elif (counter_rna + ambigiuos) == len(seqs): - print('You have ', ambigiuos, ' ambigious NA. I suppose they are RNA') + elif counter_rna + ambigiuos == len(seqs): + print(f'You have {ambigiuos} ambigious NA. I suppose they are RNA') return "RNA" - elif (counter_dna + counter_rna + ambigiuos) == len(seqs): + elif counter_dna + counter_rna + ambigiuos == len(seqs): return "MIXED" else: raise ValueError("I can work only with RNA and DNA. \n Check your sequences and try one more time!") @@ -103,8 +103,8 @@ def complement(seq: str) -> str: complement_dict = {'A': 'U', 'a': 'u', 'C': 'G', 'c': 'g', 'G': 'C', 'g': 'c', 'U': 'A', 'u': 'a'} else: raise ValueError("Input sequence must be DNA or RNA.") - for i in seq: - new_seq.append(complement_dict.get(i)) + for nucl in seq: + new_seq.append(complement_dict.get(nucl)) return ''.join(new_seq) @@ -133,11 +133,11 @@ def reverse_transcription(seq: str) -> str: """ c_dna = [] u_to_t = {'U': 'T', 'u': 't'} - for i in seq: - if i in u_to_t: - c_dna.append(u_to_t.get(i)) + for nucl in seq: + if nucl in u_to_t: + c_dna.append(u_to_t.get(nucl)) else: - c_dna.append(i) + c_dna.append(nucl) return ''.join(c_dna) From 560242dfeda76c10687c0fb9d7b853cfdd2f2cc2 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Tue, 17 Oct 2023 17:08:28 +0400 Subject: [PATCH 52/64] Update 'amino_analyzer_utils.py' to improve PEP8 style --- gene_code_utils/amino_analyzer_utils.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/gene_code_utils/amino_analyzer_utils.py b/gene_code_utils/amino_analyzer_utils.py index f01958e..68a351a 100644 --- a/gene_code_utils/amino_analyzer_utils.py +++ b/gene_code_utils/amino_analyzer_utils.py @@ -1,5 +1,5 @@ -AA_SET = set(['V', 'I', 'L', 'E', 'Q', 'D', 'N', 'H', 'W', 'F', 'Y', 'R', 'K', 'S', 'T', 'M', 'A', 'G', 'P', 'C', - 'v', 'i', 'l', 'e', 'q', 'd', 'n', 'h', 'w', 'f', 'y', 'r', 'k', 's', 't', 'm', 'a', 'g', 'p', 'c']) +AA_SET = {'V', 'I', 'L', 'E', 'Q', 'D', 'N', 'H', 'W', 'F', 'Y', 'R', 'K', 'S', 'T', 'M', 'A', 'G', 'P', 'C', + 'v', 'i', 'l', 'e', 'q', 'd', 'n', 'h', 'w', 'f', 'y', 'r', 'k', 's', 't', 'm', 'a', 'g', 'p', 'c'} HYDROPHOBIC_AA = ['A', 'V', 'L', 'I', 'P', 'F', 'W', 'M'] HYDROPHILIC_AA = ['R', 'N', 'D', 'C', 'Q', 'E', 'G', 'H', 'K', 'S', 'T', 'Y'] AMINO_ACIDS = {'A': 'Ala', 'C': 'Cys', 'D': 'Asp', 'E': 'Glu', 'F': 'Phe', 'G': 'Gly', 'H': 'His', 'I': 'Ile', 'K': 'Lys', 'L': 'Leu', @@ -107,7 +107,7 @@ def peptide_cutter(sequence: str, enzyme: str = "trypsin") -> list: return "You have chosen an enzyme that is not provided. Please choose between trypsin and chymotrypsin." if enzyme == "trypsin": # Trypsin cuts peptide chains mainly at the carboxyl side of the amino acids lysine or arginine. - for aa in range(len(sequence)-1): + for aa in range(len(sequence) - 1): if sequence[aa] in ['K', 'R', 'k', 'r'] and sequence[aa+1] not in ['P','p']: cleavage_sites.append(aa + 1) From e820d51588f2cc53cc4a89d8b80fcd9dcf2ba4c6 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Tue, 17 Oct 2023 17:11:21 +0400 Subject: [PATCH 53/64] Update 'filter_dna_utils.py' for better PEP8 style --- gene_code_utils/filter_dna_utils.py | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/gene_code_utils/filter_dna_utils.py b/gene_code_utils/filter_dna_utils.py index 9518808..cd0117b 100644 --- a/gene_code_utils/filter_dna_utils.py +++ b/gene_code_utils/filter_dna_utils.py @@ -84,8 +84,7 @@ def count_gc_content(dna: str) -> float: """ dna = dna.upper() gc = dna.count('G') + dna.count('C') - at = dna.count('A') + dna.count('T') - gc_content = gc / (at + gc) * 100 + gc_content = gc / len(dna) * 100 return gc_content From 03943771e6ead7239f894bbe00b82d5ec6513fba Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Tue, 17 Oct 2023 17:13:05 +0400 Subject: [PATCH 54/64] Add float type for gc_bound in 'gene_code_main_operations' function --- gene_code_main_operations | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gene_code_main_operations b/gene_code_main_operations index d6cf98b..8da095f 100644 --- a/gene_code_main_operations +++ b/gene_code_main_operations @@ -38,7 +38,7 @@ def filter_dna(input_path: str, output_filename: str = '', gc_bounds: Union[Tupl filtered_seqs = dict() for fastq_name, (seq, seq_comment, quality) in seqs.items(): if is_dna(seq): - if type(gc_bounds) == int: + if (type(gc_bounds) == int) or (type(gc_bounds) == float): gc_bounds = (0, gc_bounds) if type(length_bounds) == int: length_bounds = (0, length_bounds) From 5368bb3064a35e3a08ed3cb5c4975034d3bea64e Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Wed, 18 Oct 2023 14:50:12 +0300 Subject: [PATCH 55/64] Update 'filter_dna' function to write output file in directory --- gene_code_main_operations | 16 ++++++++++------ 1 file changed, 10 insertions(+), 6 deletions(-) diff --git a/gene_code_main_operations b/gene_code_main_operations index 8da095f..15d5ddb 100644 --- a/gene_code_main_operations +++ b/gene_code_main_operations @@ -1,17 +1,18 @@ -from typing import Dict, Tuple, Union, List +from typing import Tuple, Union, List from gene_code_utils.filter_dna_utils import is_dna, is_in_gc_bounds, is_in_length_bounds, check_quality, write_filtered_fastq, read_fastq_file from gene_code_utils.amino_analyzer_utils import is_aa, aa_weight, count_hydroaffinity, peptide_cutter, one_to_three_letter_code, sulphur_containing_aa_counter from gene_code_utils.dna_rna_tools_utils import type_rna_or_dna, transcribe, reverse_transcription, has_start_codon, reverse, complement, reverse_complement, is_palindrome +import os def filter_dna(input_path: str, output_filename: str = '', gc_bounds: Union[Tuple[int, int], int] = (0, 100), - length_bounds: Union[Tuple[int, int], int] = (0, 2**32), quality_threshold: int = 0) -> Dict[str, Tuple[str, str]]: + length_bounds: Union[Tuple[int, int], int] = (0, 2**32), quality_threshold: int = 0) -> None: """ Filter and process a dictionary of FASTQ sequences based on specified criteria. Args: input_path (str): Path to the input FASTQ file. Please write your path with directory etc. You can use os.path.join(dir_name, file_name) - output_filename (str): Name of the output FASTQ file (without the file extension). By default, it is the same as the input name. + output_filename (str): Name of the output FASTQ file. By default, it is the same as the input name. gc_bounds (tuple or int): GC content filtering bounds. If a tuple, it represents the lower and upper bounds (inclusive) for GC content as percentages. If an int, it represents the upper bound for GC content as a percentage. @@ -38,7 +39,7 @@ def filter_dna(input_path: str, output_filename: str = '', gc_bounds: Union[Tupl filtered_seqs = dict() for fastq_name, (seq, seq_comment, quality) in seqs.items(): if is_dna(seq): - if (type(gc_bounds) == int) or (type(gc_bounds) == float): + if type(gc_bounds) == int: gc_bounds = (0, gc_bounds) if type(length_bounds) == int: length_bounds = (0, length_bounds) @@ -46,10 +47,13 @@ def filter_dna(input_path: str, output_filename: str = '', gc_bounds: Union[Tupl filtered_seqs[fastq_name] = (seq,seq_comment, quality) if output_filename == '': - output_filename = input_path + output_filename = os.path.basename(input_path) + if not os.path.exists('fastq_filtrator_results'): + os.mkdir('fastq_filtrator_results') + output_filename = os.path.join('fastq_filtrator_results', output_filename) write_filtered_fastq(filtered_seqs, output_filename) - return filtered_seqs + return None def run_amino_analyzer(sequence: str, procedure: str, *, weight_type: str = 'average', enzyme: str = 'trypsin'): From 96e99a7023f48d32a28cbc312fb4a281c80a4cf9 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Tue, 31 Oct 2023 19:07:30 +0400 Subject: [PATCH 56/64] Rename gene_code_main_operations to gene_code_main_operations.py --- gene_code_main_operations => gene_code_main_operations.py | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename gene_code_main_operations => gene_code_main_operations.py (100%) diff --git a/gene_code_main_operations b/gene_code_main_operations.py similarity index 100% rename from gene_code_main_operations rename to gene_code_main_operations.py From 3279f69db130171399b23327372c0c7c30093875 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Tue, 31 Oct 2023 19:08:20 +0400 Subject: [PATCH 57/64] Update gene_code_utils/filter_dna_utils.py Co-authored-by: pavlovanadia <111665536+pavlovanadia@users.noreply.github.com> --- gene_code_utils/filter_dna_utils.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gene_code_utils/filter_dna_utils.py b/gene_code_utils/filter_dna_utils.py index cd0117b..8ed495c 100644 --- a/gene_code_utils/filter_dna_utils.py +++ b/gene_code_utils/filter_dna_utils.py @@ -54,7 +54,7 @@ def write_filtered_fastq(filtered_seqs: Dict[str, Tuple[str, str, str]], output_ """ with open(f'{output_filename}', 'w') as file: for name, (seq, comment, quality) in filtered_seqs.items(): - file.write(f'@{name}_{seq}_{comment}_{quality}\n') + file.write(f'@{name}\n{seq}\n{comment}\n{quality}\n') def is_dna(seq: str) -> bool: From 879cc4e8b550d20bed8023b20de19d653e763062 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Fri, 23 Feb 2024 18:17:30 +0300 Subject: [PATCH 58/64] Delete gene_code_utils directory --- gene_code_utils/amino_analyzer_utils.py | 157 --------------------- gene_code_utils/dna_rna_tools_utils.py | 178 ------------------------ gene_code_utils/filter_dna_utils.py | 152 -------------------- 3 files changed, 487 deletions(-) delete mode 100644 gene_code_utils/amino_analyzer_utils.py delete mode 100644 gene_code_utils/dna_rna_tools_utils.py delete mode 100644 gene_code_utils/filter_dna_utils.py diff --git a/gene_code_utils/amino_analyzer_utils.py b/gene_code_utils/amino_analyzer_utils.py deleted file mode 100644 index 68a351a..0000000 --- a/gene_code_utils/amino_analyzer_utils.py +++ /dev/null @@ -1,157 +0,0 @@ -AA_SET = {'V', 'I', 'L', 'E', 'Q', 'D', 'N', 'H', 'W', 'F', 'Y', 'R', 'K', 'S', 'T', 'M', 'A', 'G', 'P', 'C', - 'v', 'i', 'l', 'e', 'q', 'd', 'n', 'h', 'w', 'f', 'y', 'r', 'k', 's', 't', 'm', 'a', 'g', 'p', 'c'} -HYDROPHOBIC_AA = ['A', 'V', 'L', 'I', 'P', 'F', 'W', 'M'] -HYDROPHILIC_AA = ['R', 'N', 'D', 'C', 'Q', 'E', 'G', 'H', 'K', 'S', 'T', 'Y'] -AMINO_ACIDS = {'A': 'Ala', 'C': 'Cys', 'D': 'Asp', 'E': 'Glu', 'F': 'Phe', 'G': 'Gly', 'H': 'His', 'I': 'Ile', 'K': 'Lys', 'L': 'Leu', - 'M': 'Met', 'N': 'Asn', 'P': 'Pro', 'Q': 'Gln', 'R': 'Arg', 'S': 'Ser', 'T': 'Thr', 'V': 'Val', 'W': 'Trp', 'Y': 'Tyr'} - - -def is_aa(seq: str) -> bool: - """ - Check if a sequence contains only amino acids. - - Args: - seq (str): The input sequence to be checked. - - Returns: - bool: True if the sequence contains only amino acids, False otherwise. - """ - unique_chars = set(seq) - return unique_chars <= AA_SET - - -def choose_weight(weight: str) -> dict: - """ - Choose the weight type of amino acids - average or monoisotopic. - - Args: - weight (str): The type of weight to choose, either 'average' or 'monoisotopic'. - - Returns: - dict: A dictionary mapping amino acids to their weights based on the chosen type. - """ - if weight == 'average': - average_weights = { - 'A': 71.0788, 'R': 156.1875, 'N': 114.1038, 'D': 115.0886, 'C': 103.1388, - 'E': 129.1155, 'Q': 128.1307, 'G': 57.0519, 'H': 137.1411, 'I': 113.1594, - 'L': 113.1594, 'K': 128.1741, 'M': 131.1926, 'F': 147.1766, 'P': 97.1167, - 'S': 87.0782, 'T': 101.1051, 'W': 186.2132, 'Y': 163.1760, 'V': 99.1326 - } - elif weight == 'monoisotopic': - monoisotopic_weights = { - 'A': 71.03711, 'R': 156.10111, 'N': 114.04293, 'D': 115.02694, 'C': 103.00919, - 'E': 129.04259, 'Q': 128.05858, 'G': 57.02146, 'H': 137.05891, 'I': 113.08406, - 'L': 113.08406, 'K': 128.09496, 'M': 131.04049, 'F': 147.06841, 'P': 97.05276, - 'S': 87.03203, 'T': 101.04768, 'W': 186.07931, 'Y': 163.06333, 'V': 99.06841 - } - else: - raise ValueError(f"I do not know what '{weight}' is :( \n Read help or just do not write anything except your sequence") - - return average_weights if weight == 'average' else monoisotopic_weights - - -def aa_weight(seq: str, weight: str = 'average') -> float: - """ - Calculate the amino acids weight in a protein sequence. - - Args: - seq (str): The amino acid sequence to calculate the weight for. - weight (str, optional): The type of weight to use, either 'average' or 'monoisotopic'. Default is 'average'. - - Returns: - float: The calculated weight of the amino acid sequence. - """ - weights_aa = choose_weight(weight) - final_weight = 0 - for aa in seq.upper(): - final_weight += weights_aa[aa] - return round(final_weight, 3) - - -def count_hydroaffinity(seq: str) -> list: - """ - Count the quantity of hydrophobic and hydrophilic amino acids in a protein sequence. - - Args: - seq (str): The protein sequence for which to count hydrophobic and hydrophilic amino acids. - - Returns: - tuple: A tuple containing the count of hydrophobic and hydrophilic amino acids, respectively. - """ - hydrophobic_count = 0 - hydrophilic_count = 0 - seq = seq.upper() - - for aa in seq: - if aa in HYDROPHOBIC_AA: - hydrophobic_count += 1 - elif aa in HYDROPHILIC_AA: - hydrophilic_count += 1 - - return [hydrophobic_count, hydrophilic_count] - - -def peptide_cutter(sequence: str, enzyme: str = "trypsin") -> list: - """ - This function identifies cleavage sites in a given peptide sequence using a specified enzyme. - - Args: - sequence (str): The input peptide sequence. - enzyme (str): The enzyme to be used for cleavage. Choose between "trypsin" and "chymotrypsin". Default is "trypsin". - - Returns: - str: A message indicating the number and positions of cleavage sites, or an error message if an invalid enzyme is provided. - """ - cleavage_sites = [] - if enzyme not in ("trypsin", "chymotrypsin"): - return "You have chosen an enzyme that is not provided. Please choose between trypsin and chymotrypsin." - - if enzyme == "trypsin": # Trypsin cuts peptide chains mainly at the carboxyl side of the amino acids lysine or arginine. - for aa in range(len(sequence) - 1): - if sequence[aa] in ['K', 'R', 'k', 'r'] and sequence[aa+1] not in ['P','p']: - cleavage_sites.append(aa + 1) - - if enzyme == "chymotrypsin": # Chymotrypsin preferentially cleaves at Trp, Tyr and Phe in position P1(high specificity) - for aa in range(len(sequence) - 1): - if sequence[aa] in ['W', 'Y', 'F', 'w', 'y', 'f'] and sequence[aa+1] not in ['P','p']: - cleavage_sites.append(aa + 1) - - if cleavage_sites: - print( f"Found {len(cleavage_sites)} {enzyme} cleavage sites at positions {', '.join(map(str, cleavage_sites))}") - return cleavage_sites# list(', '.join(map(str, cleavage_sites))) - else: - print(f"No {enzyme} cleavage sites were found.") - return 0 - - -def one_to_three_letter_code(sequence: str) -> str: - """ - This function converts a protein sequence from one-letter amino acid code to three-letter code. - - Args: - sequence (str): The input protein sequence in one-letter code. - - Returns: - str: The converted protein sequence in three-letter code. - """ - three_letter_code = [AMINO_ACIDS.get(aa.upper()) for aa in sequence] - return '-'.join(three_letter_code) - - -def sulphur_containing_aa_counter(sequence: str) -> int: - """ - This function counts sulphur-containing amino acids (Cysteine and Methionine) in a protein sequence. - - Args: - sequence (str): The input protein sequence in one-letter code. - - Returns: - str: The number of sulphur-containing amino acids in a protein sequence. - """ - counter = 0 - sequence = sequence.upper() - for aa in sequence: - if aa == 'C' or aa == 'M': - counter += 1 - answer = str(counter) - return answer diff --git a/gene_code_utils/dna_rna_tools_utils.py b/gene_code_utils/dna_rna_tools_utils.py deleted file mode 100644 index 754f87e..0000000 --- a/gene_code_utils/dna_rna_tools_utils.py +++ /dev/null @@ -1,178 +0,0 @@ -from typing import List, Union - -DNA = set("ATGCatgc") -RNA = set("AUGCaugc") -TRANSCRIPTION_TABLE = { - "a": "a", "A": "A", - "t": "u", "T": "U", - "u": "t", "U": "T", - "g": "g", "G": "G", - "c": "c", "C": "C" -} - - -def is_dna(seq: str) -> bool: - """ - Check if a sequence is DNA. - - Args: - seq (str): The input sequence to check. - - Returns: - bool: True if the sequence is DNA, False otherwise. - """ - unique_chars = set(seq) - return unique_chars <= DNA - - -def is_rna(seq: str) -> bool: - """ - Check if a sequence is RNA. - - Args: - seq (str): The input sequence to check. - - Returns: - bool: True if the sequence is RNA, False otherwise. - """ - unique_chars = set(seq) - return unique_chars <= RNA - - -def type_rna_or_dna(seqs: List[str]) -> str: - """ - Determine the type of RNA or DNA from a list of sequences. - - Args: - seqs (List[str]): List of sequences to determine their type. - - Returns: - str: 'DNA' if all sequences are DNA, 'RNA' if all sequences are RNA, - 'MIXED' if there are both DNA and RNA sequences, or raises a ValueError for unsupported sequences. - """ - counter_dna = 0 - counter_rna = 0 - ambigiuos = 0 - for nucl in seqs: - if is_dna(nucl) and is_rna(nucl): - ambigiuos = ambigiuos + 1 - else: - if is_dna(nucl): - counter_dna=counter_dna + 1 - elif is_rna(nucl): - counter_rna=counter_rna + 1 - if counter_dna + ambigiuos == len(seqs): - print(f'You have {ambigiuos} ambigious NA. I suppose they are DNA') - return "DNA" - elif counter_rna + ambigiuos == len(seqs): - print(f'You have {ambigiuos} ambigious NA. I suppose they are RNA') - return "RNA" - elif counter_dna + counter_rna + ambigiuos == len(seqs): - return "MIXED" - else: - raise ValueError("I can work only with RNA and DNA. \n Check your sequences and try one more time!") - - -def reverse(seq: str) -> str: - """ - Reverse a sequence. - - Args: - seq (str): The input sequence. - - Returns: - str: The reversed sequence. - """ - return seq[::-1] - - -def complement(seq: str) -> str: - """ - Find the complement of a DNA or RNA sequence. - - Args: - seq (str): The input DNA or RNA sequence. - - Returns: - str: The complemented sequence. - """ - new_seq = [] - if is_dna(seq): - complement_dict = {'A': 'T', 'a': 't', 'C': 'G', 'c': 'g', 'G': 'C', 'g': 'c', 'T': 'A', 't': 'a'} - elif is_rna(seq): - complement_dict = {'A': 'U', 'a': 'u', 'C': 'G', 'c': 'g', 'G': 'C', 'g': 'c', 'U': 'A', 'u': 'a'} - else: - raise ValueError("Input sequence must be DNA or RNA.") - for nucl in seq: - new_seq.append(complement_dict.get(nucl)) - return ''.join(new_seq) - - -def reverse_complement(seq: str) -> str: - """ - Find the reverse complement of a DNA or RNA sequence. - - Args: - seq (str): The input DNA or RNA sequence. - - Returns: - str: The reverse complemented sequence. - """ - return reverse(complement(seq)) - - -def reverse_transcription(seq: str) -> str: - """ - Perform reverse transcription on an RNA sequence. - - Args: - seq (str): The input RNA sequence. - - Returns: - str: The reverse transcribed DNA sequence. - """ - c_dna = [] - u_to_t = {'U': 'T', 'u': 't'} - for nucl in seq: - if nucl in u_to_t: - c_dna.append(u_to_t.get(nucl)) - else: - c_dna.append(nucl) - return ''.join(c_dna) - - -def has_start_codon(seq: str) -> Union[bool, str]: - """ - Check if an RNA sequence has a start codon. - - Args: - seq (str): The input RNA sequence. - - Returns: - Union[bool, str]: True if a start codon is found, False if not found, - '?' if the input is DNA and needs to be transcribed first. - """ - if is_rna(seq): - return "AUG" in seq.upper() - if is_dna(seq): - print("First, you should transcribe your DNA.") - return '?' - raise ValueError("Input sequence must be DNA or RNA.") - - -def is_palindrome(seq: str) -> bool: - """ - Check if a sequence is a palindrome. - - Args: - seq (str): The input sequence to check. - - Returns: - bool: True if the sequence is a palindrome, False otherwise. - """ - new_seq = reverse_complement(seq) - return new_seq.upper() == seq.upper() - - -def transcribe(seq): - return ''.join([TRANSCRIPTION_TABLE[i] for i in seq]) diff --git a/gene_code_utils/filter_dna_utils.py b/gene_code_utils/filter_dna_utils.py deleted file mode 100644 index 8ed495c..0000000 --- a/gene_code_utils/filter_dna_utils.py +++ /dev/null @@ -1,152 +0,0 @@ -from typing import Dict, Tuple - - -def read_fastq_file(input_path: str) -> Dict[str, Tuple[str, str, str]]: - """ - Read a FASTQ file and convert it into a dictionary. - - Args: - input_path (str): Path to the input FASTQ file. - - Returns: - fastq_dict (dict): A dictionary containing FASTQ sequences. - Key: Sequence name (string). - Value: Tuple of three strings (sequence, comment, quality). - """ - fastq_dict = {} - current_name = '' - current_seq = '' - current_comment = '' - current_quality = '' - line_counter = 1 - - with open(input_path, 'r') as file: - for line in file: - line = line.strip() - - if line_counter == 1: - current_name = line[1:] - line_counter += 1 - elif line_counter == 2: - current_seq = line - line_counter += 1 - elif line_counter == 3: - current_comment = line - line_counter += 1 - elif line_counter == 4: - current_quality = line - line_counter += 1 - - if line_counter == 5: - fastq_dict[current_name] = (current_seq, current_comment, current_quality) - line_counter = 1 - - return fastq_dict - - -def write_filtered_fastq(filtered_seqs: Dict[str, Tuple[str, str, str]], output_filename: str): - """ - Write a FASTQ file - - Args: - filtered_seqs (dict): dict of FASTQ to write them in output - output_filename (str): Path to the output FASTQ file. By default, it is the same as the input name. - """ - with open(f'{output_filename}', 'w') as file: - for name, (seq, comment, quality) in filtered_seqs.items(): - file.write(f'@{name}\n{seq}\n{comment}\n{quality}\n') - - -def is_dna(seq: str) -> bool: - """ - Check if the input sequence consists only of DNA characters. - - Args: - seq (str): The input DNA sequence. - - Returns: - bool: True if the sequence contains only DNA characters, False otherwise. - """ - unique_chars = set(seq) - nucleotides = set('ATGCatgc') - return unique_chars <= nucleotides - - -def count_gc_content(dna: str) -> float: - """ - Calculate the GC content percentage of a DNA sequence. - - Args: - dna (str): The input DNA sequence. - - Returns: - float: The GC content percentage. - """ - dna = dna.upper() - gc = dna.count('G') + dna.count('C') - gc_content = gc / len(dna) * 100 - return gc_content - - -def is_in_gc_bounds(bounds: tuple, dna: str) -> bool: - """ - Check if the GC content of a DNA sequence falls within the specified bounds. - - Args: - bounds (tuple): A tuple specifying the lower and upper bounds for GC content. - dna (str): The input DNA sequence. - - Returns: - bool: True if the GC content is within the bounds, False otherwise. - """ - gc_content = count_gc_content(dna) - upper_bound = max(bounds[0], bounds[1]) - lower_bound = min(bounds[0], bounds[1]) - if upper_bound < 0 or lower_bound < 0: - raise ValueError("Invalid gc_bounds. Each value must be greater than zero.") - if upper_bound == lower_bound: - upper_bound += 1 - return lower_bound <= gc_content <= upper_bound - - -def is_in_length_bounds(bounds: tuple, dna: str) -> bool: - """ - Check if the length of a DNA sequence falls within the specified bounds. - - Args: - bounds (tuple): A tuple specifying the lower and upper bounds for sequence length. - dna (str): The input DNA sequence. - - Returns: - bool: True if the sequence length is within the bounds, False otherwise. - """ - dna_length = len(dna) - lower_bound = min(bounds[0], bounds[1]) - upper_bound = max(bounds[0], bounds[1]) - if upper_bound < 0 or lower_bound < 0: - raise ValueError("Invalid length_bounds. Each value must be greater than zero.") - if upper_bound == lower_bound: - upper_bound += 1 - return lower_bound <= dna_length <= upper_bound - - -def check_quality(quality_threshold: int, quality: str) -> bool: - """ - Check if the average quality score of a sequence exceeds a threshold. - - Args: - quality_threshold (int): The quality threshold for filtering sequences. - quality (str): The quality string (in Phred+33 format). - - Returns: - bool: True if the average quality score is above the threshold, False otherwise. - """ - if quality_threshold < 0 or quality_threshold > 42: - raise ValueError("Invalid quality_threshold. Must be an integer in the range [0, 42]") - score = 0 - for char in quality: - score += ord(char) - 33 - if ord(char) < 33 or ord(char) > 126: - return False - avg_quality = score / len(quality) - return quality_threshold <= avg_quality From cd3461014bacaec99ca2fdc3a4bd00401f86da9e Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Fri, 23 Feb 2024 18:19:05 +0300 Subject: [PATCH 59/64] Delete gene_code_utils functions --- gene_code_main_operations.py | 94 ------------------------------------ 1 file changed, 94 deletions(-) diff --git a/gene_code_main_operations.py b/gene_code_main_operations.py index 15d5ddb..e406142 100644 --- a/gene_code_main_operations.py +++ b/gene_code_main_operations.py @@ -1,7 +1,4 @@ from typing import Tuple, Union, List -from gene_code_utils.filter_dna_utils import is_dna, is_in_gc_bounds, is_in_length_bounds, check_quality, write_filtered_fastq, read_fastq_file -from gene_code_utils.amino_analyzer_utils import is_aa, aa_weight, count_hydroaffinity, peptide_cutter, one_to_three_letter_code, sulphur_containing_aa_counter -from gene_code_utils.dna_rna_tools_utils import type_rna_or_dna, transcribe, reverse_transcription, has_start_codon, reverse, complement, reverse_complement, is_palindrome import os @@ -54,94 +51,3 @@ def filter_dna(input_path: str, output_filename: str = '', gc_bounds: Union[Tupl write_filtered_fastq(filtered_seqs, output_filename) return None - - -def run_amino_analyzer(sequence: str, procedure: str, *, weight_type: str = 'average', enzyme: str = 'trypsin'): - """ - This is the main function to run the amino-analyzer.py tool. - - Args: - sequence (str): The input protein sequence in one-letter code. - procedure (str): amino-analyzer.py tool has 5 functions at all: - 1. aa_weight - Calculate the amino acids weight in a protein sequence. Return float weight - weight_type = 'average': default argument for 'aa_weight' function. weight_type = 'monoisotopic' can be used as a second option. - 2. count_hydroaffinity - Count the quantity of hydrophobic and hydrophilic amino acids in a protein sequence. Return list in order: hydrophobic, hydrophilic - 3. peptide_cutter - This function identifies cleavage sites in a given peptide sequence using a specified enzyme. Return list of cleavage sites - enzyme = 'trypsin': default argument for 'peptide_cutter' function. enzyme = 'chymotrypsin' can be used as a second option. - 4. one_to_three_letter_code - This function converts a protein sequence from one-letter amino acid code to three-letter code. Return string of amino acids in three-letter code - 5. sulphur_containing_aa_counter - This function counts sulphur-containing amino acids in a protein sequence. Return quantaty of sulphur-containing amino acids - - Returns: - The result of the specified procedure. - - Raises: - ValueError: If the procedure is not recognized or if the input sequence contains non-amino acid characters. - - Note: - - Supported amino acid characters: V, I, L, E, Q, D, N, H, W, F, Y, R, K, S, T, M, A, G, P, C, v, i, l, e, q, d, n, h, w, f, y, r, k, s, t, m, a, g, p, c. - - Make sure to provide a valid procedure name and sequence for analysis. - """ - - procedures = ['aa_weight', 'count_hydroaffinity', 'peptide_cutter', 'one_to_three_letter_code', 'sulphur_containing_aa_counter'] - if procedure not in procedures: - raise ValueError(f"Incorrect procedure. Acceptable procedures: {', '.join(procedures)}") - - if not is_aa(sequence): - raise ValueError("Incorrect sequence. Only amino acids are allowed (V, I, L, E, Q, D, N, H, W, F, Y, R, K, S, T, M, A, G, P, C, v, i, l, e, q, d, n, h, w, f, y, r, k, s, t, m, a, g, p, c).") - - if procedure == 'aa_weight': - result = aa_weight(sequence, weight_type) - elif procedure == 'count_hydroaffinity': - result = count_hydroaffinity(sequence) - elif procedure == 'peptide_cutter': - result = peptide_cutter(sequence, enzyme) - elif procedure == 'one_to_three_letter_code': - result = one_to_three_letter_code(sequence) - elif procedure == 'sulphur_containing_aa_counter': - result = sulphur_containing_aa_counter(sequence) - return result - - -def run_dna_rna_tools(seq: str, *args: Union[str, Tuple[str, ...]]) -> Union[str, List[str]]: - """ - Run various DNA and RNA sequence operations. - - Args: - seq (str): The input DNA or RNA sequence. - *args (Union[str, Tuple[str, ...]]): Additional sequences or options. - If the last argument is a string, it specifies the operation to perform. - If the last argument is 'transcribe', 'reverse_transcription', or 'has_start_codon', the input sequence(s) must be RNA. - Otherwise, the input sequence(s) must be DNA. - - Returns: - Union[str, List[str]]: The result of the specified operation(s). - If a single operation is performed, the result is a string. - If multiple operations are performed, the result is a list of strings. - """ - procedure = args[len(args)-1] - seqs = list((seq,)+args[:-1]) - dna_or_rna = type_rna_or_dna(seqs) - new_seq = [] - - operation_map = { - 'transcribe': transcribe, - 'reverse_transcription': reverse_transcription, - 'has_start_codon': has_start_codon, - 'reverse': reverse, - 'complement': complement, - 'reverse_complement': reverse_complement, - 'is_palindrome': is_palindrome, - } - - if procedure not in operation_map: - raise ValueError("Invalid procedure. Check your sequences and try again.") - if (procedure in ('transcribe')) and (dna_or_rna == 'RNA'): - raise ValueError("This procedure is only for DNA sequences. Check your sequences and try again.") - elif (procedure in ('reverse_transcription', 'has_start_codon')) and (dna_or_rna == 'DNA'): - raise ValueError("This procedure is only for RNA sequences. Check your sequences and try again.") - - print(f"Hi! Here is your {procedure} for all your {dna_or_rna} sequences") - - operation_func = operation_map[procedure] - new_seq = [operation_func(i) for i in seqs] - return new_seq[0] if len(new_seq) == 1 else new_seq From b9a0cd450f99e828f7b6b38f1045f6e9145b0026 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Fri, 23 Feb 2024 21:32:43 +0300 Subject: [PATCH 60/64] Add filter_dna with biopyhton functions --- gene_code_main_operations.py | 97 +++++++++++++++++++++++++++++------- 1 file changed, 80 insertions(+), 17 deletions(-) diff --git a/gene_code_main_operations.py b/gene_code_main_operations.py index e406142..8de2914 100644 --- a/gene_code_main_operations.py +++ b/gene_code_main_operations.py @@ -1,14 +1,31 @@ -from typing import Tuple, Union, List import os +from typing import Tuple, Union + +import numpy as np +from Bio import SeqIO +from Bio import SeqUtils + + +class InvalidInput(ValueError): + """ + Exception raised for invalid input values. + + Inherits from ValueError. + + Attributes: + message (str): Explanation of the error. + """ + pass def filter_dna(input_path: str, output_filename: str = '', gc_bounds: Union[Tuple[int, int], int] = (0, 100), - length_bounds: Union[Tuple[int, int], int] = (0, 2**32), quality_threshold: int = 0) -> None: + length_bounds: Union[Tuple[int, int], int] = (0, 2 ** 32), quality_threshold: int = 0) -> None: """ Filter and process a dictionary of FASTQ sequences based on specified criteria. Args: - input_path (str): Path to the input FASTQ file. Please write your path with directory etc. You can use os.path.join(dir_name, file_name) + input_path (str): Path to the input FASTQ file. Please write your path with directory etc. + You can use os.path.join(dir_name, file_name) output_filename (str): Name of the output FASTQ file. By default, it is the same as the input name. gc_bounds (tuple or int): GC content filtering bounds. If a tuple, it represents the lower and upper bounds (inclusive) for GC content as percentages. @@ -22,7 +39,7 @@ def filter_dna(input_path: str, output_filename: str = '', gc_bounds: Union[Tupl Default is 0 (phred33 scale). Returns: - filtered_seqs (dict): A dictionary containing filtered FASTQ sequences. + filtered_seqs (dict): A file containing filtered FASTQ sequences. Key: Sequence name (string). Value: Tuple of two strings (sequence, comment, quality). @@ -32,22 +49,68 @@ def filter_dna(input_path: str, output_filename: str = '', gc_bounds: Union[Tupl quality_threshold will be 30 <= sequence score """ - seqs = read_fastq_file(input_path) - filtered_seqs = dict() - for fastq_name, (seq, seq_comment, quality) in seqs.items(): - if is_dna(seq): - if type(gc_bounds) == int: - gc_bounds = (0, gc_bounds) - if type(length_bounds) == int: - length_bounds = (0, length_bounds) - if is_in_gc_bounds(gc_bounds, seq) and is_in_length_bounds(length_bounds, seq) and check_quality(quality_threshold, quality): - filtered_seqs[fastq_name] = (seq,seq_comment, quality) - + + good_reads = [] + records = SeqIO.parse(input_path, "fastq") + if isinstance(gc_bounds, int): + gc_bounds = (0, gc_bounds) + if isinstance(length_bounds, int): + length_bounds = (0, length_bounds) + if not isinstance(gc_bounds, tuple) or not isinstance(length_bounds, tuple): + raise InvalidInput() + for record in records: + if (np.mean(record.letter_annotations["phred_quality"]) >= quality_threshold) and \ + is_in_gc_bounds(gc_bounds, SeqUtils.gc_fraction(record) * 100) and \ + is_in_length_bounds(length_bounds, len(record.seq)): + good_reads.append(record) + if output_filename == '': - output_filename = os.path.basename(input_path) + output_filename = os.path.basename(input_path) if not os.path.exists('fastq_filtrator_results'): os.mkdir('fastq_filtrator_results') output_filename = os.path.join('fastq_filtrator_results', output_filename) - write_filtered_fastq(filtered_seqs, output_filename) + SeqIO.write(good_reads, handle=output_filename, format="fastq") return None + + +def is_in_gc_bounds(bounds: tuple, gc_content: float) -> bool: + """ + Check if the GC content of a DNA sequence falls within the specified bounds. + + Args: + bounds (tuple): A tuple specifying the lower and upper bounds for GC content. + gc_content (float): GC content of input DNA. + + Returns: + bool: True if the GC content is within the bounds, False otherwise. + """ + + upper_bound = max(bounds[0], bounds[1]) + lower_bound = min(bounds[0], bounds[1]) + if upper_bound <= 0 or lower_bound < 0: + raise InvalidInput("Invalid gc_bounds. Each value must be greater than zero.") + if upper_bound == lower_bound: + upper_bound += 1 + return lower_bound <= gc_content <= upper_bound + + +def is_in_length_bounds(bounds: tuple, dna_length: int) -> bool: + """ + Check if the length of a DNA sequence falls within the specified bounds. + + Args: + bounds (tuple): A tuple specifying the lower and upper bounds for sequence length. + dna_length (int): The length of input DNA sequence. + + Returns: + bool: True if the sequence length is within the bounds, False otherwise. + """ + + lower_bound = min(bounds[0], bounds[1]) + upper_bound = max(bounds[0], bounds[1]) + if upper_bound < 0 or lower_bound < 0: + raise ValueError("Invalid length_bounds. Each value must be greater than zero.") + if upper_bound == lower_bound: + upper_bound += 1 + return lower_bound <= dna_length <= upper_bound From f5ec4dafc249d62647d135dc94a56870bb1e15c1 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 24 Feb 2024 15:16:37 +0300 Subject: [PATCH 61/64] Add BiologicalSequence class and subclasses --- gene_code_main_operations.py | 146 ++++++++++++++++++++++++++++++++++- 1 file changed, 144 insertions(+), 2 deletions(-) diff --git a/gene_code_main_operations.py b/gene_code_main_operations.py index 8de2914..880d884 100644 --- a/gene_code_main_operations.py +++ b/gene_code_main_operations.py @@ -1,5 +1,6 @@ import os -from typing import Tuple, Union +from typing import Tuple, Union, Type +from abc import ABC, abstractmethod import numpy as np from Bio import SeqIO @@ -18,6 +19,148 @@ class InvalidInput(ValueError): pass +class BiologicalSequence(ABC, str): + + @abstractmethod + def __str__(self): + pass + + @abstractmethod + def check_alphabet(self): + pass + + +class NucleicAcidSequence(BiologicalSequence): + def __init__(self, sequence: str, alphabet: dict, complement_alphabet: dict = None): + self.sequence = None + self.alphabet = None + self.complement_alphabet = None + + + def setter(self, sequence: str, alphabet: dict, complement_alphabet: dict = None): + self.sequence = sequence + self.alphabet = alphabet + self.complement_alphabet = complement_alphabet + + + def __str__(self): + return (str(self.sequence)) + + + def check_alphabet(self) -> Type: + """ + Check if a sequence is DNA or RNA. + + Returns: + bool: True if the sequence is DNA or RNA, False otherwise. + """ + + unique_chars = set(self.sequence) + if not (unique_chars <= self.alphabet): + raise InvalidInput() + return type(self) # ??? + + + def complement(self) -> str: + """ + Find the complement of a DNA or RNA sequence. + + Returns: + str: The complemented sequence. + """ + + new_seq = [] + for nucl in self.sequence: + new_seq.append(self.complement_alphabet.get(nucl)) + return type(self)(''.join(new_seq)) + + + def gc_content(self): + return SeqUtils.gc_fraction(self.sequence) + + +class DNASequence(NucleicAcidSequence): + _alphabet = {'A', 'T', 'G', 'C', 'a', 't', 'g', 'c'} + _complement_alphabet = {'A': 'T', 'a': 't', 'C': 'G', 'c': 'g', 'G': 'C', 'g': 'c', 'T': 'A', 't': 'a'} + transcribe_alphabet = { + "a": "a", "A": "A", + "t": "u", "T": "U", + "u": "t", "U": "T", + "g": "g", "G": "G", + "c": "c", "C": "C" + } + + def __init__(self, sequence: str, alphabet: dict = _alphabet, + complement_alphabet: dict = _complement_alphabet): + super().setter(sequence, alphabet, complement_alphabet) + + def transcribe(self): + return RNASequence(''.join([self.transcribe_alphabet[i] for i in self.sequence])) + + +class RNASequence(NucleicAcidSequence): + _alphabet = {'A', 'U', 'G', 'C', 'a', 'u', 'g', 'c'} + _complement_alphabet = {'A': 'U', 'a': 'u', 'C': 'G', 'c': 'g', 'G': 'C', 'g': 'c', 'U': 'A', 'u': 'a'} + + def __init__(self, sequence: str, alphabet: dict = _alphabet, + complement_alphabet: dict = _complement_alphabet): + super().setter(sequence, alphabet, complement_alphabet) + + +class AminoAcidSequence(BiologicalSequence): + alphabet = {'V', 'I', 'L', 'E', 'Q', 'D', 'N', 'H', 'W', 'F', 'Y', 'R', 'K', 'S', 'T', 'M', 'A', 'G', 'P', + 'C', 'v', 'i', 'l', 'e', 'q', 'd', 'n', 'h', 'w', 'f', 'y', 'r', 'k', 's', 't', 'm', 'a', 'g', 'p', 'c'} + average_weights = { + 'A': 71.0788, 'R': 156.1875, 'N': 114.1038, 'D': 115.0886, 'C': 103.1388, + 'E': 129.1155, 'Q': 128.1307, 'G': 57.0519, 'H': 137.1411, 'I': 113.1594, + 'L': 113.1594, 'K': 128.1741, 'M': 131.1926, 'F': 147.1766, 'P': 97.1167, + 'S': 87.0782, 'T': 101.1051, 'W': 186.2132, 'Y': 163.1760, 'V': 99.1326 + } + three_letter_alphabet = {'A': 'Ala', 'C': 'Cys', 'D': 'Asp', 'E': 'Glu', 'F': 'Phe', 'G': 'Gly', 'H': 'His', + 'I': 'Ile', 'K': 'Lys', 'L': 'Leu', + 'M': 'Met', 'N': 'Asn', 'P': 'Pro', 'Q': 'Gln', 'R': 'Arg', 'S': 'Ser', 'T': 'Thr', + 'V': 'Val', 'W': 'Trp', 'Y': 'Tyr'} + + def __init__(self, sequence: str): + self.sequence = sequence + + def __str__(self): + return (str(self.sequence)) + + + def aa_average_weight(self, weight: str = 'average') -> float: + """ + Calculate the amino acids weight in a protein sequence. + + Args: + seq (str): The amino acid sequence to calculate the weight for. + weight (str, optional): The type of weight to use, either 'average' or 'monoisotopic'. Default is 'average'. + + Returns: + float: The calculated weight of the amino acid sequence. + """ + + final_weight = 0 + for aa in self.sequence.upper(): + final_weight += self.average_weights[aa] + return round(final_weight, 3) + + + def one_to_three_letter_code(self) -> str: + """ + This function converts a protein sequence from one-letter amino acid code to three-letter code. + + Args: + sequence (str): The input protein sequence in one-letter code. + + Returns: + str: The converted protein sequence in three-letter code. + """ + + three_letter_code = [self.three_letter_alphabet.get(aa.upper()) for aa in self.sequence] + return '-'.join(three_letter_code) + + def filter_dna(input_path: str, output_filename: str = '', gc_bounds: Union[Tuple[int, int], int] = (0, 100), length_bounds: Union[Tuple[int, int], int] = (0, 2 ** 32), quality_threshold: int = 0) -> None: """ @@ -70,7 +213,6 @@ def filter_dna(input_path: str, output_filename: str = '', gc_bounds: Union[Tupl os.mkdir('fastq_filtrator_results') output_filename = os.path.join('fastq_filtrator_results', output_filename) SeqIO.write(good_reads, handle=output_filename, format="fastq") - return None From 022848270d22a4f4ce775a6fc5d5f4b25b0721fe Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 24 Feb 2024 17:40:42 +0300 Subject: [PATCH 62/64] Add NotImplementedError --- gene_code_main_operations.py | 27 +++++++++++++++++---------- 1 file changed, 17 insertions(+), 10 deletions(-) diff --git a/gene_code_main_operations.py b/gene_code_main_operations.py index 880d884..586ea6e 100644 --- a/gene_code_main_operations.py +++ b/gene_code_main_operations.py @@ -19,6 +19,18 @@ class InvalidInput(ValueError): pass +class NotImplementedError(ValueError): + """ + Exception raised for call invalid class sample. + + Inherits from ValueError. + + Attributes: + message (str): Explanation of the error. + """ + pass + + class BiologicalSequence(ABC, str): @abstractmethod @@ -31,22 +43,20 @@ def check_alphabet(self): class NucleicAcidSequence(BiologicalSequence): - def __init__(self, sequence: str, alphabet: dict, complement_alphabet: dict = None): + def __init__(self, sequence: str, alphabet: dict = None, complement_alphabet: dict = None): self.sequence = None self.alphabet = None self.complement_alphabet = None - + def setter(self, sequence: str, alphabet: dict, complement_alphabet: dict = None): self.sequence = sequence self.alphabet = alphabet self.complement_alphabet = complement_alphabet - def __str__(self): return (str(self.sequence)) - def check_alphabet(self) -> Type: """ Check if a sequence is DNA or RNA. @@ -60,7 +70,6 @@ def check_alphabet(self) -> Type: raise InvalidInput() return type(self) # ??? - def complement(self) -> str: """ Find the complement of a DNA or RNA sequence. @@ -68,13 +77,13 @@ def complement(self) -> str: Returns: str: The complemented sequence. """ - + if self.alphabet == None: + raise NotImplementedError() new_seq = [] for nucl in self.sequence: new_seq.append(self.complement_alphabet.get(nucl)) return type(self)(''.join(new_seq)) - def gc_content(self): return SeqUtils.gc_fraction(self.sequence) @@ -127,7 +136,6 @@ def __init__(self, sequence: str): def __str__(self): return (str(self.sequence)) - def aa_average_weight(self, weight: str = 'average') -> float: """ Calculate the amino acids weight in a protein sequence. @@ -145,7 +153,6 @@ def aa_average_weight(self, weight: str = 'average') -> float: final_weight += self.average_weights[aa] return round(final_weight, 3) - def one_to_three_letter_code(self) -> str: """ This function converts a protein sequence from one-letter amino acid code to three-letter code. @@ -213,8 +220,8 @@ def filter_dna(input_path: str, output_filename: str = '', gc_bounds: Union[Tupl os.mkdir('fastq_filtrator_results') output_filename = os.path.join('fastq_filtrator_results', output_filename) SeqIO.write(good_reads, handle=output_filename, format="fastq") - return None + return None def is_in_gc_bounds(bounds: tuple, gc_content: float) -> bool: """ From e00b9b20e51c65a18491936dc05e1a26880e2f08 Mon Sep 17 00:00:00 2001 From: CaptnClementine <131146976+CaptnClementine@users.noreply.github.com> Date: Sat, 24 Feb 2024 18:13:41 +0300 Subject: [PATCH 63/64] Add requirements.txt --- requirements.txt | Bin 0 -> 158 bytes 1 file changed, 0 insertions(+), 0 deletions(-) create mode 100644 requirements.txt diff --git a/requirements.txt b/requirements.txt new file mode 100644 index 0000000000000000000000000000000000000000..ab6242611125965c98306821c529cacb26ecc88e GIT binary patch literal 158 zcmX|)+X_HX6hzmv@+&6}i3dNU6y Date: Sun, 25 Feb 2024 09:11:23 +0300 Subject: [PATCH 64/64] Add check_alphabet to class AminoAcidSequence --- gene_code_main_operations.py | 23 +++++++++++++++++++---- 1 file changed, 19 insertions(+), 4 deletions(-) diff --git a/gene_code_main_operations.py b/gene_code_main_operations.py index 586ea6e..5060bd3 100644 --- a/gene_code_main_operations.py +++ b/gene_code_main_operations.py @@ -18,7 +18,6 @@ class InvalidInput(ValueError): """ pass - class NotImplementedError(ValueError): """ Exception raised for call invalid class sample. @@ -57,7 +56,7 @@ def setter(self, sequence: str, alphabet: dict, complement_alphabet: dict = None def __str__(self): return (str(self.sequence)) - def check_alphabet(self) -> Type: + def check_alphabet(self) -> bool: """ Check if a sequence is DNA or RNA. @@ -67,8 +66,8 @@ def check_alphabet(self) -> Type: unique_chars = set(self.sequence) if not (unique_chars <= self.alphabet): - raise InvalidInput() - return type(self) # ??? + return False + return True def complement(self) -> str: """ @@ -135,7 +134,22 @@ def __init__(self, sequence: str): def __str__(self): return (str(self.sequence)) + + + def check_alphabet(self) -> bool: + """ + Check if a sequence is DNA or RNA. + + Returns: + bool: True if the sequence is DNA or RNA, False otherwise. + """ + unique_chars = set(self.sequence) + if not (unique_chars <= self.alphabet): + return False + return True + + def aa_average_weight(self, weight: str = 'average') -> float: """ Calculate the amino acids weight in a protein sequence. @@ -153,6 +167,7 @@ def aa_average_weight(self, weight: str = 'average') -> float: final_weight += self.average_weights[aa] return round(final_weight, 3) + def one_to_three_letter_code(self) -> str: """ This function converts a protein sequence from one-letter amino acid code to three-letter code.