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NAMESPACE
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108 lines (107 loc) · 3.07 KB
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# Generated by roxygen2: do not edit by hand
export(AnalCorrHuman)
export(BasicAnalHuman)
export(BasicAnalMouse)
export(ComparePeaksHuman)
export(ConservationHuman)
export(ConservationMouse)
export(GetHumanMHCIdata)
export(GetMouseMHCIdata)
export(HousekeepersHuman)
export(MakeCorrHuman)
export(MakeCorrMouse)
export(PlotsHumanProtCorr)
export(PlotsMouseProtCorr)
export(ProgressBar)
export(SigCorrsHuman)
export(SigCorrsMouse)
export(SupplFigure10)
export(SupplFigure2)
export(SupplFigure3)
export(SupplFigure4)
export(SupplFigure5)
export(SupplFigure6)
export(getAccessions)
export(mkFigure2)
export(mkFigure3)
export(mkFigure4)
export(mkFigure5)
export(mkFigure6)
export(mkHumanConnectivityMap)
export(mkMouseConnectivityMap)
importFrom(AnnotationDbi,select)
importFrom(FactoMineR,PCA)
importFrom(GenomicFeatures,exonsBy)
importFrom(GenomicFeatures,genes)
importFrom(GenomicFeatures,promoters)
importFrom(Matrix,forceSymmetric)
importFrom(RColorBrewer,brewer.pal)
importFrom(TxDb.Hsapiens.UCSC.hg38.knownGene,TxDb.Hsapiens.UCSC.hg38.knownGene)
importFrom(TxDb.Mmusculus.UCSC.mm10.knownGene,TxDb.Mmusculus.UCSC.mm10.knownGene)
importFrom(broom,glance)
importFrom(cowplot,draw_plot)
importFrom(cowplot,draw_plot_label)
importFrom(cowplot,ggdraw)
importFrom(data.table,as.data.table)
importFrom(dplyr,count)
importFrom(dplyr,group_by)
importFrom(dplyr,intersect)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_if)
importFrom(dplyr,n)
importFrom(dplyr,summarise)
importFrom(dplyr,summarise_all)
importFrom(factoextra,fviz_pca_var)
importFrom(factoextra,get_pca_var)
importFrom(forcats,fct_reorder)
importFrom(ggforce,facet_zoom)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_smooth)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_brewer)
importFrom(ggplot2,scale_color_gradient)
importFrom(ggplot2,scale_fill_brewer)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,scale_y_log10)
importFrom(ggplot2,sec_axis)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_void)
importFrom(ggplot2,xlab)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(ggplotify,as.ggplot)
importFrom(ggpmisc,stat_poly_eq)
importFrom(ggrepel,geom_text_repel)
importFrom(limma,vennCounts)
importFrom(limma,vennDiagram)
importFrom(magrittr,`%>%`)
importFrom(org.Hs.eg.db,org.Hs.eg.db)
importFrom(org.Mm.eg.db,org.Mm.eg.db)
importFrom(pheatmap,pheatmap)
importFrom(reshape2,dcast)
importFrom(reshape2,melt)
importFrom(rtracklayer,BigWigFile)
importFrom(rtracklayer,import)
importFrom(scales,wrap_format)
importFrom(stats,lm)
importFrom(stats,reshape)
importFrom(tidyr,spread)
importFrom(webr,PieDonut)
importFrom(zoo,rollapply)
importFrom(zoo,zoo)