DS_transfer_mouse/pyproject.toml at main · CostelloLab/DS_transfer_mouse · GitHub

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[build-system]
requires = ["setuptools"]
build-backend = "setuptools.build_meta"

[project]
name = "pvae"
version = "0.1.0"

[tool.setuptools.package-dir]
"" = "src"

[tool.setuptools.packages.find]
where = ["src"]
namespaces = false

[tool.pytest.ini_options]
# color output and show skipped
addopts = "--color=yes -rs"

[tool.black]
target-version = ['py39', 'py310', 'py311', 'py312']
line-length = 88

[tool.ruff]
target-version = "py312"
line-length = 88

[tool.ruff.lint]
ignore = [
    "E501",  # line-too-long (black should handle)
    "UP038",  # it produces slower code
]
select = [
    "B",  # flake8-bugbear
    "C",  # flake8-comprehensions
    "C90",  # mccabe
    "E",  # pycodestyle errors
    "F",  # pyflakes
    "I",  # isort
    "UP",  # pyupgrade
    "W",  # pycode warnings
]

[tool.ruff.lint.mccabe]
max-complexity = 19

[tool.ruff.lint.per-file-ignores]
"nbs/**/*.ipynb" = ["B018"]
"nbs/**/*.py" = ["B018"]
"src/linear_signal/**/*.py" = ["F821"]
"tasks.py" = ["B008"]

[tool.pytask.ini_options]
#paths = "pvae/tasks/"
task_files = ["tasks.py"]
show_errors_immediately = true

[tool.pytask.ini_options.markers]
setup_data = "Data setup tasks (downloading external data, processing, etc)"
run_standard_methods = "Run standard methods"
run_pvae = "Run/train the PVAE model"