From 1a06bed4ee453ec2d67a2e03df34b88dbd071c99 Mon Sep 17 00:00:00 2001
From: DavAug <daugu@equinor.com>
Date: Sat, 27 Sep 2025 12:00:03 +0200
Subject: [PATCH 1/3] Replace setup.py by pyproject.toml

---
 pyproject.toml | 47 ++++++++++++++++++++++++++++++++++++++++++++
 setup.py       | 53 --------------------------------------------------
 2 files changed, 47 insertions(+), 53 deletions(-)
 create mode 100644 pyproject.toml
 delete mode 100644 setup.py

diff --git a/pyproject.toml b/pyproject.toml
new file mode 100644
index 00000000..11732cfd
--- /dev/null
+++ b/pyproject.toml
@@ -0,0 +1,47 @@
+[build-system]
+requires = ["setuptools>=61.0.0", "wheel"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "chi-drm"
+version = "1.0.2"
+description = "A python package to model dose response dynamics."
+readme = { file = "README.md" }
+requires-python = ">=3.8"
+license = { file = "LICENSE.md" }
+authors = [
+    { name = "David Augustin", email = "david.augustin@cervify.com" },
+]
+keywords = ["python", "packaging", "example"]
+classifiers = [
+    "Programming Language :: Python :: 3",
+    "License :: OSI Approved :: BSD 3-clause license",
+    "Operating System :: OS Independent",
+]
+
+dependencies = [
+    'arviz>=0.17',
+    'myokit>=1.34',
+    'numpy>=1.17',
+    'pandas>=0.24',
+    'pints>=0.4',
+    'plotly>=4.8.1',
+    'scipy>=1.11',  # 07/2024 - ArviZ seems to not yet keep up with SciPy
+    'tqdm>=4.46.1',
+    'xarray>=0.19',
+]
+
+[project.optional-dependencies]
+docs = [
+    'sphinx-rtd-theme>=1.3',
+    'sphinx>=1.5, !=1.7.3',     # For doc generation
+    'sphinx-copybutton>=0.5.2'
+]
+
+notebooks = [
+    'jupyter==1.0.0',
+]
+
+[project.urls]
+Documentation = "https://chi.readthedocs.io"
+Repository = "https://github.com/DavAug/chi"
\ No newline at end of file
diff --git a/setup.py b/setup.py
deleted file mode 100644
index a67d3ecd..00000000
--- a/setup.py
+++ /dev/null
@@ -1,53 +0,0 @@
-from setuptools import setup, find_packages
-
-# Load text for description
-with open('README.md') as f:
-    readme = f.read()
-
-
-# Go!
-setup(
-    # Module name
-    name='chi-drm',
-    version='1.0.2',
-    description='Package to model dose response dynamics',
-    long_description=readme,
-    long_description_content_type="text/markdown",
-    url="https://chi.readthedocs.io",
-
-    # License name
-    license='BSD 3-clause license',
-
-    # Maintainer information
-    maintainer='David Augustin',
-    maintainer_email='david.augustin@cs.ox.ac.uk',
-
-    # Packages and data to include
-    packages=find_packages(
-        include=('chi', 'chi.*'),
-        exclude=('chi/tests',)),
-    include_package_data=True,
-
-    # List of dependencies
-    install_requires=[
-        'arviz>=0.17',
-        'myokit>=1.34',
-        'numpy>=1.17',
-        'pandas>=0.24',
-        'pints>=0.4',
-        'plotly>=4.8.1',
-        'scipy>=1.11',  # 07/2024 - ArviZ seems to not yet keep up with SciPy
-        'tqdm>=4.46.1',
-        'xarray>=0.19',
-    ],
-    extras_require={
-        'docs': [
-            'sphinx-rtd-theme>=1.3',
-            'sphinx>=1.5, !=1.7.3',     # For doc generation
-            'sphinx-copybutton>=0.5.2'
-        ],
-        'notebooks': [
-            'jupyter==1.0.0',
-        ]
-    },
-)

From 34cb2d0ae435d9f0f556928db1903863cc961205 Mon Sep 17 00:00:00 2001
From: DavAug <daugu@equinor.com>
Date: Sat, 27 Sep 2025 12:04:02 +0200
Subject: [PATCH 2/3] Tweaks

---
 pyproject.toml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 11732cfd..c9155188 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -6,9 +6,9 @@ build-backend = "setuptools.build_meta"
 name = "chi-drm"
 version = "1.0.2"
 description = "A python package to model dose response dynamics."
-readme = { file = "README.md" }
+readme = "README.md"
 requires-python = ">=3.8"
-license = { file = "LICENSE.md" }
+license = "LICENSE.md"
 authors = [
     { name = "David Augustin", email = "david.augustin@cervify.com" },
 ]

From d5c3584699378e09a1fa6dc1fb71e1c93e150352 Mon Sep 17 00:00:00 2001
From: DavAug <daugu@equinor.com>
Date: Sat, 27 Sep 2025 12:08:34 +0200
Subject: [PATCH 3/3] FIx license reference

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index c9155188..7e48caf8 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -8,7 +8,7 @@ version = "1.0.2"
 description = "A python package to model dose response dynamics."
 readme = "README.md"
 requires-python = ">=3.8"
-license = "LICENSE.md"
+license = { file = "LICENSE.md" }
 authors = [
     { name = "David Augustin", email = "david.augustin@cervify.com" },
 ]