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---
layout: guidelines
title: "ESIP Software Guidelines Draft | Resources and Bibliography"
---
<h1>References</h1>
<p class="c0"><span>“26.4. Unittest — Unit Testing Framework — Python 3.5.2 Documentation.” Accessed November 23, 2016. https://docs.python.org/3.5/library/unittest.html.</span></p><p class="c0"><span>“Accessibility - W3C.” Accessed June 15, 2016. https://www.w3.org/standards/webdesign/accessibility#wai.</span></p><p class="c0"><span>“Agile Project Management.” Accessed October 20, 2016. https://www.pivotaltracker.com/.</span></p><p class="c0"><span>“A JavaScript Library for Building User Interfaces - React.” Accessed October 26, 2016. https://facebook.github.io/react/.</span></p><p class="c0"><span>Alter, George, George C Banks, Denny Borsboom, Sara D Bowman, Steven J Breckler, Stuart Buck, Chris Chambers, et al. </span><span class="c1">Transparency and Openness Promotion (TOP) Guidelines</span><span>. Open Science Framework, 2016. osf.io/9f6gx.</span></p><p class="c0"><span>“Apache Subversion.” Accessed October 19, 2016. https://subversion.apache.org/.</span></p><p class="c0"><span>“API Blueprint | API Blueprint.” Accessed October 20, 2016. https://apiblueprint.org/.</span></p><p class="c0"><span>Atlassian. “Bitbucket | The Git Solution for Professional Teams.” </span><span class="c1">Bitbucket</span><span>. Accessed October 20, 2016. https://bitbucket.org/.</span></p><p class="c0"><span>“Backbone.js.” Accessed October 26, 2016. http://backbonejs.org/.</span></p><p class="c0"><span>“Best Practice Library | Section508.gov.” Accessed May 24, 2016. http://section508.gov/content/learn/best-practice-library.</span></p><p class="c0"><span>“Bootstrap · The World’s Most Popular Mobile-First and Responsive Front-End Framework.” Accessed October 20, 2016. http://getbootstrap.com/.</span></p><p class="c0"><span>Brutlag, Jake. “Speed Matters.” </span><span class="c1">Google Research Blog</span><span>, June 23, 2009. https://research.googleblog.com/2009/06/speed-matters.html.</span></p><p class="c0"><span>Burger, Matthias, Klaus Juenemann, and Thomas Koenig. </span><span class="c1">RUnit: R Unit Test Framework</span><span> (version 0.4.31), 2015. https://cran.r-project.org/web/packages/RUnit/index.html.</span></p><p class="c0"><span>Burgess, Annie. “2015 AIST Evaluations Overview.” Federation of Earth Science Information Partners, 2016. http://testbed.esipfed.org/sites/default/files/2015_AIST_Evaluations_Overview.pdf.</span></p><p class="c0"><span>Car, Nicholas. “Data Reuse Fitness Assessment Using Provenance.” Denver, CO, 2016. http://www.scidatacon.org/2016/sessions/53/paper/47/.</span></p><p class="c0"><span>“Center for Trustworthy Scientific Cyberinfrastructure.” </span><span class="c1">Center for Trustworthy Scientific Cyberinfrastructure</span><span>. Accessed May 24, 2016. http://trustedci.org/.</span></p><p class="c0"><span>“Chef – Embrace DevOps.” </span><span class="c1">Chef</span><span>. Accessed October 20, 2016. https://www.chef.io/.</span></p><p class="c0"><span>“Choose an Open Source License.” </span><span class="c1">Choose a License</span><span>. Accessed June 13, 2016. http://choosealicense.com/.</span></p><p class="c0"><span>“CLAHub.” </span><span class="c1">Contributor License Agreements on Github</span><span>. Accessed May 24, 2016. https://www.clahub.com/.</span></p><p class="c0"><span>“Code Conventions for the Java Programming Language: Contents,” 1999. http://www.oracle.com/technetwork/java/codeconvtoc-136057.html.</span></p><p class="c0"><span>“Code, Test, and Deploy Together with GitLab Open Source Git Repo Management Software.” </span><span class="c1">GitLab</span><span>. Accessed October 20, 2016. https://about.gitlab.com/.</span></p><p class="c0"><span>“Continuous Integration and Delivery.” </span><span class="c1">CircleCI</span><span>. Accessed June 15, 2016. https://circleci.com/.</span></p><p class="c0"><span>“Coverity - Static Code Analysis (SAST).” Accessed October 20, 2016. http://www.synopsys.com/software-integrity/products/static-code-analysis.html.</span></p><p class="c0"><span>“Creative Commons.” </span><span class="c1">Creative Commons</span><span>. Accessed June 16, 2016. https://creativecommons.org/.</span></p><p class="c0"><span>“CRediT.” </span><span class="c1">CASRAI</span><span>, April 18, 2016. http://casrai.org/credit.</span></p><p class="c0"><span>Crockford, Douglas. “JSLint.” </span><span class="c1">GitHub</span><span>, October 20, 2015. https://github.com/douglascrockford/JSLint.</span></p><p class="c0"><span>“CWICSmart A Programmatic OpenSearch Client.” Accessed June 15, 2016. http://testbed.echo.nasa.gov/cwic-smart/validations.</span></p><p class="c0"><span>“Daring Fireball: Markdown.” Accessed October 20, 2016. https://daringfireball.net/projects/markdown/.</span></p><p class="c0"><span>“DASPOS.” Accessed May 24, 2016. https://daspos.crc.nd.edu/.</span></p><p class="c0"><span>“Docker.” </span><span class="c1">Docker</span><span>. Accessed June 14, 2016. http://www.docker.com/.</span></p><p class="c0"><span>“Draft U.S. Web Design Standards Documentation | UI Components.” Accessed October 20, 2016. https://standards.usa.gov/.</span></p><p class="c0"><span>“ECO-OP.” </span><span class="c1">ECO-OP Repository</span><span>, 2015. https://github.com/tetherless-world/ecoop.</span></p><p class="c0"><span>Eghbal, Nadia. “Contributing Guides: A Template,” n.d. https://github.com/nayafia/contributing-template.</span></p><p class="c0"><span>Ehmke, Coraline Ada. “Contributor Covenant: A Code of Conduct for Open Source Projects.,” 2014. http://contributor-covenant.org/.</span></p><p class="c0"><span>“Ember.js: A Framework for Creating Ambitious Web Applications.” Accessed October 26, 2016. http://emberjs.com/.</span></p><p class="c0"><span>“End-to-End-provenance/RDataTracker.” </span><span class="c1">GitHub</span><span>. Accessed October 20, 2016. https://github.com/End-to-end-provenance/RDataTracker.</span></p><p class="c0"><span>Fielding, Roy T. “Architectural Styles and the Design of Network-Based Software Architectures.” University of California, Irvine, 2000. https://www.ics.uci.edu/~fielding/pubs/dissertation/top.htm.</span></p><p class="c0"><span>“Foundation | The Most Advanced Responsive Front-End Framework in the World.” Accessed October 20, 2016. http://foundation.zurb.com/.</span></p><p class="c0"><span>Fowler, Martin. “Continuous Integration.” </span><span class="c1">Martinfowler.com</span><span>. Accessed June 15, 2016. http://martinfowler.com/articles/continuousIntegration.html.</span></p><p class="c0"><span>———. “Mocks Aren’t Stubs.” </span><span class="c1">Martinfowler.com</span><span>, January 2, 2007. http://martinfowler.com/articles/mocksArentStubs.html.</span></p><p class="c0"><span>Gil, Yolanda, Cédric H. David, Ibrahim Demir, Bakinam T. Essawy, Robinson W. Fulweiler, Jonathan L. Goodall, Leif Karlstrom, et al. “Towards the Geoscience Paper of the Future: Best Practices for Documenting and Sharing Research from Data to Software to Provenance.” </span><span class="c1">Earth and Space Science</span><span>, July 1, 2016, 2015EA000136. doi:10.1002/2015EA000136.</span></p><p class="c0"><span>“Git.” Accessed October 19, 2016. https://git-scm.com/.</span></p><p class="c0"><span>“GNU Coding Standards: Releases.” Accessed June 14, 2016. https://www.gnu.org/prep/standards/html_node/Releases.html#index-version-numbers_002c-for-releases.</span></p><p class="c0"><span>“Google Analytics Solutions - Web Analytics & Marketing Measurement – Google.” Accessed October 20, 2016. https://www.google.com/analytics/#?modal_active=none.</span></p><p class="c0"><span>“Google VSAQ: Vendor Security Assessment Questionnaire.” </span><span class="c1">Google VSAQ</span><span>. Accessed May 24, 2016. https://github.com/google/vsaq.</span></p><p class="c0"><span>“Graceful Degradation versus Progressive Enhancement - W3C Wiki.” Accessed June 16, 2016. https://www.w3.org/wiki/Graceful_degradation_versus_progressive_enhancement.</span></p><p class="c0"><span>Graybeal, John. “ESIP Technology Evaluation Framework Final Recommendations,” January 2016. http://wiki.esipfed.org/images/7/73/ESIP_Technology_Evaluation_Framework_Recommendations.pdf.</span></p><p class="c0"><span>Hettrick, Simon. “Research Software Sustainability: Report on a Knowledge Exchange Workshop.” The Software Sustainability Institute, February 2016. http://repository.jisc.ac.uk/6332/1/Research_Software_Sustainability_Report_on_KE_Workshop_Feb_2016_FINAL.pdf.</span></p><p class="c0"><span>Holdren, John P. “Increasing Access to the Results of Federally Funded Scientific Research,” February 22, 2013. https://www.whitehouse.gov/sites/default/files/microsites/ostp/ostp_public_access_memo_2013.pdf.</span></p><p class="c0"><span>“Home | Open API Initiative.” Accessed October 20, 2016. https://openapis.org/.</span></p><p class="c0"><span>“InCommon Certificate Service.” Accessed June 14, 2016. https://www.incommon.org/certificates/.</span></p><p class="c0"><span>Jackson, Mike, Steve Crouch, and Rob Baxter. “Software Evaluation: Criteria-Based Assessment.” Software Sustainability Institure, November 2011. http://software.ac.uk/sites/default/files/SSI-SoftwareEvaluationCriteria.pdf.</span></p><p class="c0"><span>“Jenkins.” Accessed June 15, 2016. https://jenkins.io/index.html.</span></p><p class="c0"><span>@jlevy. “Jlevy/ghizmo.” </span><span class="c1">GitHub</span><span>. Accessed October 25, 2016. https://github.com/jlevy/ghizmo.</span></p><p class="c0"><span>“Journal of Open Research Software.” Accessed October 17, 2016. http://openresearchsoftware.metajnl.com/.</span></p><p class="c0"><span>jquery.org, jquery Foundation-. “jQuery.” Accessed October 26, 2016. https://jquery.com/.</span></p><p class="c0"><span>“Jupyter Notebook Viewer.” Accessed October 27, 2016. https://nbviewer.jupyter.org/.</span></p><p class="c0"><span>Kudrjavets, Gunnar, Nachi Nagappan, and Tom Ball. “Assessing the Relationship between Software Assertions and Code Quality: An Empirical Investigation.” </span><span class="c1">Microsoft Research</span><span>, May 1, 2006. https://www.microsoft.com/en-us/research/publication/assessing-the-relationship-between-software-assertions-and-code-qualityan-empirical-investigation/.</span></p><p class="c0"><span>“Let’s Encrypt - Free SSL/TLS Certificates.” Accessed June 14, 2016. https://letsencrypt.org/.</span></p><p class="c0"><span>“Licenses & Standards | Open Source Initiative.” Accessed October 20, 2016. https://opensource.org/licenses.</span></p><p class="c0"><span>“Linux Containers.” Accessed October 20, 2016. https://linuxcontainers.org/.</span></p><p class="c0"><span>Marcotte, Ethan. “Responsive Web Design.” Accessed June 16, 2016. http://alistapart.com/article/responsive-web-design.</span></p><p class="c0"><span>Ma, Xiaogang, Stace E. Beaulieu, Linyun Fu, Peter Fox, Massimo Di Stefano, and Patrick West. “Documenting Provenance for Reproducible Marine Ecosystem Assessment in Open Science.” In </span><span class="c1">Oceanographic and Marine Cross-Domain Data Management for Sustainable Development</span><span>, edited by Paolo Diviacco, Adam Leadbetter, and Helen Glaves, 100–126. Hershey, PA, 2017. http://www.igi-global.com/chapter/documenting-provenance-for-reproducible-marine-ecosystem-assessment-in-open-science/166838.</span></p><p class="c0"><span>“Mercurial SCM.” Accessed October 19, 2016. https://www.mercurial-scm.org/.</span></p><p class="c0"><span>“Nagios - The Industry Standard In IT Infrastructure Monitoring.” </span><span class="c1">Nagios</span><span>. Accessed October 20, 2016. https://www.nagios.org/.</span></p><p class="c0"><span>Narla, Chaitali, and Diego Salas. “Hermetic Servers.” </span><span class="c1">Google Testing Blog</span><span>, October 3, 2012. https://testing.googleblog.com/2012/10/hermetic-servers.html.</span></p><p class="c0"><span>“NASA Technology Readiness Levels,” October 28, 2012. https://www.nasa.gov/directorates/heo/scan/engineering/technology/txt_accordion1.html.</span></p><p class="c0"><span>Oosterhof, Nikolaas N. “MOxUnit/MOxUnit.” </span><span class="c1">GitHub</span><span>. Accessed November 23, 2016. https://github.com/MOxUnit/MOxUnit.</span></p><p class="c0"><span>“OS X Human Interface Guidelines: Designing for Yosemite.” Accessed June 14, 2016. https://developer.apple.com/library/mac/documentation/UserExperience/Conceptual/OSXHIGuidelines/.</span></p><p class="c0"><span>“OWASP.” </span><span class="c1">The Open Web Application Security Project</span><span>. Accessed May 24, 2016. https://www.owasp.org/index.php/Main_Page.</span></p><p class="c0"><span>@potch. “No Maintenance Intended,” 2016. http://unmaintained.tech/.</span></p><p class="c0"><span>Priem, J., D. Taraborelli, P. Groth, and C. Neylon. “Altmetrics: A Manifesto.” </span><span class="c1">Altmetrics: A Manifesto</span><span>, October 26, 2010. http://altmetrics.org/manifesto/.</span></p><p class="c0"><span>“Project Jupyter.” Accessed October 27, 2016. http://www.jupyter.org.</span></p><p class="c0"><span>“PROV-Overview.” Accessed September 27, 2016. https://www.w3.org/TR/prov-overview/.</span></p><p class="c0"><span>“ProvStore - a Free Provenance Repository.” Accessed September 27, 2016. https://provenance.ecs.soton.ac.uk/store/.</span></p><p class="c0"><span>“Puppet - The Shortest Path to Better Software.” </span><span class="c1">Puppet</span><span>. Accessed October 20, 2016. https://puppet.com/.</span></p><p class="c0"><span>“Pylint,” 2016. https://www.pylint.org/.</span></p><p class="c0"><span>“QGIS: Developing Python Plugins.” Accessed June 15, 2016. http://docs.qgis.org/testing/en/docs/pyqgis_developer_cookbook/plugins.html.</span></p><p class="c0"><span>“QuickCheck: Automatic Testing of Haskell Programs.” Accessed October 20, 2016. https://hackage.haskell.org/package/QuickCheck.</span></p><p class="c0"><span>“RAML.” </span><span class="c1">RAML</span><span>. Accessed June 15, 2016. http://raml.org/.</span></p><p class="c0"><span>Ratnakar, Varun, and Yolanda Gil. “Ontosoft.” </span><span class="c1">Ontosoft</span><span>. Accessed May 24, 2016. http://ontosoft.org/ontology/software/.</span></p><p class="c0"><span>“Read the Docs.” Accessed June 15, 2016. https://readthedocs.org/.</span></p><p class="c0"><span>“Recipy/recipy.” </span><span class="c1">GitHub</span><span>. Accessed October 20, 2016. https://github.com/recipy/recipy.</span></p><p class="c0"><span>Regehr, John. “Use of Assertions – Embedded in Academia,” February 2, 2014. http://blog.regehr.org/archives/1091.</span></p><p class="c0"><span>“reStructuredText.” Accessed June 15, 2016. http://docutils.sourceforge.net/rst.html.</span></p><p class="c0"><span>“R Notebooks.” Accessed October 27, 2016. http://rmarkdown.rstudio.com/r_notebooks.html.</span></p><p class="c0"><span>“Roads and Bridges: The Unseen Labor Behind Our Digital Infrastructure.” </span><span class="c1">Ford Foundation</span><span>. Accessed July 15, 2016. http://www.fordfoundation.org/library/reports-and-studies/roads-and-bridges-the-unseen-labor-behind-our-digital-infrastructure/.</span></p><p class="c0"><span>“R: The R Project for Statistical Computing.” Accessed October 19, 2016. https://www.r-project.org/.</span></p><p class="c0"><span>“Selenium - Web Browser Automation.” Accessed June 15, 2016. http://www.seleniumhq.org/.</span></p><p class="c0"><span>“Semantic Versioning 2.0.0.” Accessed May 24, 2016. http://semver.org/.</span></p><p class="c0"><span>Smith, Arfon M., Daniel S. Katz, Kyle E. Niemeyer, and FORCE11 Software Citation Working Group. “Software Citation Principles.” </span><span class="c1">PeerJ Computer Science</span><span> 2 (September 19, 2016): e86. doi:10.7717/peerj-cs.86.</span></p><p class="c0"><span class="c1">SoftwareX</span><span>. Accessed June 16, 2016. http://www.journals.elsevier.com/softwarex/.</span></p><p class="c0"><span>“SourceClear: Security for Open-Source Code.” </span><span class="c1">SourceClear</span><span>. Accessed October 20, 2016. https://www.sourceclear.com/.</span></p><p class="c0"><span>“Sphinx 1.4.4 Documentation.” Accessed June 15, 2016. http://www.sphinx-doc.org/en/stable/index.html.</span></p><p class="c0"><span>Stodden, Victoria, and Sheila Miguez. “Best Practices for Computational Science: Software Infrastructure and Environments for Reproducible and Extensible Research.” </span><span class="c1">Journal of Open Research Software</span><span> 2, no. 1 (July 9, 2014). doi:10.5334/jors.ay.</span></p><p class="c0"><span>“Substack/tape.” </span><span class="c1">GitHub</span><span>. Accessed November 23, 2016. https://github.com/substack/tape.</span></p><p class="c0"><span>“Swagger – The World’s Most Popular Framework for APIs.” Accessed June 15, 2016. http://swagger.io/.</span></p><p class="c0"><span>“Taverna - Open Source and Domain Independent Workflow Management System.” Accessed September 27, 2016. http://www.taverna.org.uk/.</span></p><p class="c0"><span>“TEAM Engine: OGC Validator.” Accessed June 15, 2016. http://cite.opengeospatial.org/teamengine/.</span></p><p class="c0"><span>“Testing - The Go Programming Language.” Accessed November 23, 2016. https://golang.org/pkg/testing/.</span></p><p class="c0"><span>“The Elastic Stack.” Products. Accessed October 20, 2016. https://www.elastic.co/products.</span></p><p class="c0"><span>“The Journal of Open Source Software,” n.d. http://joss.theoj.org/.</span></p><p class="c0"><span>“The Julia Language.” Accessed October 17, 2016. http://julialang.org/.</span></p><p class="c0"><span>“The Kepler Project — Kepler.” Accessed September 27, 2016. https://kepler-project.org/.</span></p><p class="c0"><span>“The Software Credit Ontology.” Accessed August 15, 2016. https://dagstuhleas.github.io/SoftwareCreditRoles/doc/index-en.html.</span></p><p class="c0"><span>“Travis CI - Test and Deploy Your Code with Confidence.” Accessed June 15, 2016. https://travis-ci.org/.</span></p><p class="c0"><span>“Trello.” Accessed October 20, 2016. https://trello.com.</span></p><p class="c0"><span>Uhlir, P. (ed.), G. (ed.) Clement, and RDA-CODATA Legal Interoperability Interest Group. “Legal Interoperability Principles and Implementation Guidelines_Final.pdf.” Research Data Alliance & CODATA, September 8, 2016. https://rd-alliance.org/sites/default/files/attachment/Legal%20Interoperability%20Principles%20and%20Implementation%20Guidelines_Final.pdf.</span></p><p class="c0"><span>“Understanding the GitHub Flow · GitHub Guides.” Accessed June 15, 2016. https://guides.github.com/introduction/flow/.</span></p><p class="c0"><span>“Using OAuth 2.0 to Access Google APIs | Google Identity Platform.” </span><span class="c1">Google Developers</span><span>. Accessed October 20, 2016. https://developers.google.com/identity/protocols/OAuth2.</span></p><p class="c0"><span>“Vagrant by HashiCorp.” Accessed October 20, 2016. https://www.vagrantup.com/.</span></p><p class="c0"><span>“VisTrails.” Accessed September 27, 2016. https://www.vistrails.org/index.php/Main_Page.</span></p><p class="c0"><span>“WAI-ARIA Overview.” Accessed June 16, 2016. https://www.w3.org/WAI/intro/aria.php.</span></p><p class="c0"><span>“Watir.com.” Watir.com. Accessed November 27, 2016. https://watir.com/.
</span></p><p class="c0"><span>“WCAG Overview.” Accessed May 24, 2016. https://www.w3.org/WAI/intro/wcag.</span></p><p class="c0"><span>@weavejester. “Codox.” </span><span class="c1">Codox: Clojure Documentation Tool</span><span>. Accessed June 15, 2016. https://github.com/weavejester/codox.</span></p><p class="c0"><span>“Web Accessibility Initiative.” Accessed May 24, 2016. https://www.w3.org/standards/webdesign/accessibility.</span></p><p class="c0"><span>“Web Analytics Basics,” October 8, 2013. https://www.usability.gov/what-and-why/web-analytics.html.</span></p>
<h1>Sustainable Code</h1>
<p class="c0"><span>“26.4. Unittest — Unit Testing Framework — Python 3.5.2 Documentation.” Accessed November 23, 2016. https://docs.python.org/3.5/library/unittest.html.</span></p><p class="c0"><span>Ambler, Scott. “Introduction to Test Driven Development (TDD),” April 19, 2013. http://agiledata.org/essays/tdd.html.</span></p><p class="c0"><span>Beck, K. </span><span class="c1">Test-Driven Development by Example</span><span>. Addison Wesley, 2003.</span></p><p class="c0"><span>“Best Practices Criteria for Free/Libre and Open Source Software (FLOSS) (version 0.8.0).” </span><span class="c1">Linux Foundation</span><span>, n.d. https://github.com/linuxfoundation/cii-best-practices-badge/blob/master/doc/criteria.md.</span></p><p class="c0"><span>Burger, Matthias, Klaus Juenemann, and Thomas Koenig. </span><span class="c1">RUnit: R Unit Test Framework</span><span> (version 0.4.31), 2015. https://cran.r-project.org/web/packages/RUnit/index.html.</span></p><p class="c0"><span>“Code Conventions for the Java Programming Language: Contents,” 1999. http://www.oracle.com/technetwork/java/codeconvtoc-136057.html.</span></p><p class="c0"><span>“Computational Infrastructure for Geodynamics :: Best Practices.” Accessed June 12, 2016. https://geodynamics.org/cig/dev/best-practices.</span></p><p class="c0"><span>“Conda Kapsel Tutorial — Conda Documentation.” Accessed July 13, 2016. http://conda.pydata.org/docs/kapsel/.</span></p><p class="c0"><span>“Continuous Integration and Delivery.” </span><span class="c1">CircleCI</span><span>. Accessed June 15, 2016. https://circleci.com/.</span></p><p class="c0"><span>“Cookiecutter Data Science.” Accessed October 31, 2016. https://drivendata.github.io/cookiecutter-data-science/.</span></p><p class="c0"><span>Crockford, Douglas. “JSLint.” </span><span class="c1">GitHub</span><span>, October 20, 2015. https://github.com/douglascrockford/JSLint.</span></p><p class="c0"><span>“Docker.” </span><span class="c1">Docker</span><span>. Accessed June 14, 2016. http://www.docker.com/.</span></p><p class="c0"><span>“Falsehoods Programmers Believe About Names.” </span><span class="c1">Kalzumeus Software</span><span>, June 17, 2010. https://www.kalzumeus.com/2010/06/17/falsehoods-programmers-believe-about-names/.</span></p><p class="c0"><span>Forsgren, Nicole, and Jez Humble. “The Role of Continuous Delivery in IT and Organizational Performance.” SSRN Scholarly Paper. Rochester, NY: Social Science Research Network, October 27, 2015. http://papers.ssrn.com/abstract=2681909.</span></p><p class="c0"><span>Fowler, Martin. “Continuous Integration.” </span><span class="c1">Martinfowler.com</span><span>. Accessed June 15, 2016. http://martinfowler.com/articles/continuousIntegration.html.</span></p><p class="c0"><span>———. “Mocks Aren’t Stubs.” </span><span class="c1">Martinfowler.com</span><span>, January 2, 2007. http://martinfowler.com/articles/mocksArentStubs.html.</span></p><p class="c0"><span>Fucci, Davide, Giuseppe Scanniello, Simone Romano, Martin Shepperd, Boyce Sigweni, Fernando Uyaguari, Burak Turhan, Natalia Juristo, and Markku Oivo. “An External Replication on the Effects of Test-Driven Development Using a Multi-Site Blind Analysis Approach.” In </span><span class="c1">Proceedings of the 10th ACM/IEEE International Symposium on Empirical Software Engineering and Measurement</span><span>, 3:1–3:10. ESEM ’16. New York, NY, USA: ACM, 2016. doi:10.1145/2961111.2962592.</span></p><p class="c0"><span>“GNU Coding Standards: Releases.” Accessed June 14, 2016. https://www.gnu.org/prep/standards/html_node/Releases.html#index-version-numbers_002c-for-releases.</span></p><p class="c0"><span>Groen, Derek, Xiaohu Guo, James A. Grogan, Ulf D. Schiller, and James M. Osborne. “Software Development Practices in Academia: A Case Study Comparison.” </span><span class="c1">arXiv:1506.05272 [physics]</span><span>, June 17, 2015. http://arxiv.org/abs/1506.05272.</span></p><p class="c0"><span>Guo, Philip. “The Benefits of Programming with Assertions (a.k.a. Assert Statements),” June 2008. http://pgbovine.net/programming-with-asserts.htm.</span></p><p class="c0"><span>“HumanOps/HumanOps.” </span><span class="c1">GitHub</span><span>. Accessed July 15, 2016. https://github.com/HumanOps/HumanOps.</span></p><p class="c0"><span>invadmin. “The beginner’s guide to BDD.” Text. </span><span class="c1">Inviqa</span><span>, October 7, 2015. https://inviqa.com/blog/bdd-guide.</span></p><p class="c0"><span>“Jenkins.” Accessed June 15, 2016. https://jenkins.io/index.html.</span></p><p class="c0"><span>“Jupyter Notebook Best Practices for Data Science.” Accessed October 27, 2016. http://www.kdnuggets.com/2016/10/jupyter-notebook-best-practices-data-science.html?utm_content=buffer6e24a&utm_medium=social&utm_source=twitter.com&utm_campaign=buffer.</span></p><p class="c0"><span>“Jupyter Notebook Viewer.” Accessed October 27, 2016. https://nbviewer.jupyter.org/.</span></p><p class="c0"><span>“Just Say No to More End-to-End Tests.” </span><span class="c1">Google Testing Blog</span><span>. Accessed October 18, 2016. https://testing.googleblog.com/2015/04/just-say-no-to-more-end-to-end-tests.html.</span></p><p class="c0"><span>Kanewala, Upulee, and James M. Bieman. “Testing Scientific Software: A Systematic Literature Review.” </span><span class="c1">Information and Software Technology</span><span> 56, no. 10 (October 2014): 1219–32. doi:10.1016/j.infsof.2014.05.006.</span></p><p class="c0"><span>Kelly, Diane. “Scientific Software Development Viewed as Knowledge Acquisition: Towards Understanding the Development of Risk-Averse Scientific Software.” </span><span class="c1">Journal of Systems and Software</span><span> 109 (November 2015): 50–61. doi:10.1016/j.jss.2015.07.027.</span></p><p class="c0"><span>Kudrjavets, Gunnar, Nachi Nagappan, and Tom Ball. “Assessing the Relationship between Software Assertions and Code Quality: An Empirical Investigation.” </span><span class="c1">Microsoft Research</span><span>, May 1, 2006. https://www.microsoft.com/en-us/research/publication/assessing-the-relationship-between-software-assertions-and-code-qualityan-empirical-investigation/.</span></p><p class="c0"><span>“Mozilla Developer Guide > Coding Style.” </span><span class="c1">Mozilla Developer Network</span><span>, 2016. https://developer.mozilla.org/en-US/docs/Mozilla/Developer_guide/Coding_Style.</span></p><p class="c0"><span>Munir, Hussan, Krzysztof Wnuk, Kai Petersen, and Misagh Moayyed. “An Experimental Evaluation of Test Driven Development vs. Test-Last Development with Industry Professionals,” 1–10. ACM Press, 2014. doi:10.1145/2601248.2601267.</span></p><p class="c0"><span>Narla, Chaitali, and Diego Salas. “Hermetic Servers.” </span><span class="c1">Google Testing Blog</span><span>, October 3, 2012. https://testing.googleblog.com/2012/10/hermetic-servers.html.</span></p><p class="c0"><span>Oosterhof, Nikolaas N. “MOxUnit/MOxUnit.” </span><span class="c1">GitHub</span><span>. Accessed November 23, 2016. https://github.com/MOxUnit/MOxUnit.</span></p><p class="c0"><span>“Project Jupyter.” Accessed October 27, 2016. http://www.jupyter.org.</span></p><p class="c0"><span>“Pylint,” 2016. https://www.pylint.org/.</span></p><p class="c0"><span>Regehr, John. “Use of Assertions – Embedded in Academia,” February 2, 2014. http://blog.regehr.org/archives/1091.</span></p><p class="c0"><span>“R Notebooks.” Accessed October 27, 2016. http://rmarkdown.rstudio.com/r_notebooks.html.</span></p><p class="c0"><span>“Selenium - Web Browser Automation.” Accessed June 15, 2016. http://www.seleniumhq.org/.</span></p><p class="c0"><span>“Semantic Versioning 2.0.0.” Accessed May 24, 2016. http://semver.org/.</span></p><p class="c0"><span>Smith, NJ. “Sempervirens.” </span><span class="c1">GitHub</span><span>. Accessed June 16, 2016. https://github.com/njsmith/sempervirens.</span></p><p class="c0"><span>“Software Testing and Static Analysis Tools | Coverity.” </span><span class="c1">Synopsys</span><span>. Accessed June 15, 2016. http://www.coverity.com/.</span></p><p class="c0"><span>“Stealing Google’s Coding Practices for Academia.” </span><span class="c1">Stealing Google’s Coding Practices for Academia</span><span>. Accessed May 24, 2016. https://da-data.blogspot.com/2016/04/stealing-googles-coding-practices-for.html.</span></p><p class="c0"><span>“Substack/tape.” </span><span class="c1">GitHub</span><span>. Accessed November 23, 2016. https://github.com/substack/tape.</span></p><p class="c0"><span>“Testing - The Go Programming Language.” Accessed November 23, 2016. https://golang.org/pkg/testing/.</span></p><p class="c0"><span>“The Travis CI Blog: What We Learned about Continuous Integration from Analyzing 2+ Million Travis Builds.” Accessed August 6, 2016. https://blog.travis-ci.com/2016-07-28-what-we-learned-from-analyzing-2-million-travis-builds/.</span></p><p class="c0"><span>“Travis CI - Test and Deploy Your Code with Confidence.” Accessed June 15, 2016. https://travis-ci.org/.</span></p><p class="c0"><span>“Unit Tests, How to Write Testable Code and Why It Matters.” </span><span class="c1">Toptal Engineering Blog</span><span>. Accessed October 18, 2016. https://www.toptal.com/qa/how-to-write-testable-code-and-why-it-matters.</span></p><p class="c0"><span>Whitmore, Jonathan. “Jupyter Notebook Best Practices for Data Science.” </span><span class="c1">Silicon Valley Data Science</span><span>, September 10, 2015. http://svds.com/jupyter-notebook-best-practices-for-data-science/.</span></p><p class="c0"><span>Wiggins, Adam. “The Twelve-Factor App,” 2012. http://12factor.net/.</span></p><p class="c0"><span>Wilson, Greg, D. A. Aruliah, C. Titus Brown, Neil P. Chue Hong, Matt Davis, Richard T. Guy, Steven H. D. Haddock, et al. “Best Practices for Scientific Computing.” </span><span class="c1">PLOS Biol</span><span> 12, no. 1 (January 7, 2014): e1001745. doi:10.1371/journal.pbio.1001745.</span></p><p class="c0"><span>Yuan, Ding, Yu Luo, Xin Zhuang, Guilherme Renna Rodrigues, Xu Zhao, Yongle Zhang, Pranay U. Jain, and Michael Stumm. “Simple Testing Can Prevent Most Critical Failures: An Analysis of Production Failures in Distributed Data-Intensive Systems.” In </span><span class="c1">Proceedings of the 11th USENIX Conference on Operating Systems Design and Implementation</span><span>, 249–65. OSDI’14. Berkeley, CA, USA: USENIX Association, 2014. http://dl.acm.org/citation.cfm?id=2685048.2685068.</span></p><p class="c0"><span>“Watir.com.” Watir.com. Accessed November 27, 2016. https://watir.com/.
</span></p><p class="c0"><span>“Zeppelin.” Accessed October 25, 2016. http://zeppelin.apache.org/.</span></p>
<h1>Interoperable</h1>
<p class="c1"><span>“CWICSmart A Programmatic OpenSearch Client.” Accessed June 15, 2016. http://testbed.echo.nasa.gov/cwic-smart/validations.</span></p><p class="c1"><span>“EarthCube Cross-Domain Interoperability Roadmap | EarthCube.” Accessed June 4, 2016. http://earthcube.org/document/2012/earthcube-cross-domain-interoperability-roadmap.</span></p><p class="c1"><span>Fang, Jun, Songlin Hu, and Yanbo Han. “A Service Interoperability Assessment Model for Service Composition.” In </span><span class="c2">2004 IEEE International Conference on Services Computing, 2004. (SCC 2004). Proceedings</span><span>, 153–58, 2004. doi:10.1109/SCC.2004.1358002.</span></p><p class="c1"><span>Mader, Christian, Bernhard Haslhofer, and Antoine Isaac. “Finding Quality Issues in SKOS Vocabularies.” In </span><span class="c2">Theory and Practice of Digital Libraries</span><span>, edited by Panayiotis Zaphiris, George Buchanan, Edie Rasmussen, and Fernando Loizides, 7489:222–33. Berlin, Heidelberg: Springer Berlin Heidelberg, 2012. http://link.springer.com/10.1007/978-3-642-33290-6_25.</span></p><p class="c1"><span>“Open Services for Lifecycle Collaboration.” Accessed May 24, 2016. http://open-services.net/.</span></p><p class="c1"><span>Rezaei, Reza, Thiam-kian Chiew, and Sai-peck Lee. “A Review of Interoperability Assessment Models.” </span><span class="c2">Journal of Zhejiang University SCIENCE C</span><span> 14, no. 9 (September 6, 2013): 663–81. doi:10.1631/jzus.C1300013.</span></p><p class="c1"><span>“TEAM Engine: OGC Validator.” Accessed June 15, 2016. http://cite.opengeospatial.org/teamengine/.</span></p><p class="c1"><span>Wang, Wenguang, Andreas Tolk, and Weiping Wang. “The Levels of Conceptual Interoperability Model: Applying Systems Engineering Principles to M&S.” In </span><span class="c2">SpringSim’09 Proceedings</span><span>. San Diego, CA, 2009. https://arxiv.org/pdf/0908.0191.pdf.</span></p><p class="c1"><span>Zaveri, Amrapali, Anisa Rula, Andrea Maurino, Ricardo Pietrobon, Jens Lehmann, and Sören Auer. “Quality Assessment for Linked Data: A Survey: A Systematic Literature Review and Conceptual Framework.” Edited by Pascal Hitzler. </span><span class="c2">Semantic Web</span><span> 7, no. 1 (March 17, 2015): 63–93. doi:10.3233/SW-150175.</span></p><p class="c0"><span></span></p><p class="c4"><span></span></p>
<h1>Usable</h1>
<p class="c0"><span>“Accessibility - W3C.” Accessed June 15, 2016. https://www.w3.org/standards/webdesign/accessibility#wai.</span></p><p class="c0"><span>“A JavaScript Library for Building User Interfaces - React.” Accessed October 26, 2016. https://facebook.github.io/react/.</span></p><p class="c0"><span>“Backbone.js.” Accessed October 26, 2016. http://backbonejs.org/.</span></p><p class="c0"><span>“Best Practice Library | Section508.gov.” Accessed May 24, 2016. http://section508.gov/content/learn/best-practice-library.</span></p><p class="c0"><span>“Bootstrap · The World’s Most Popular Mobile-First and Responsive Front-End Framework.” Accessed October 20, 2016. http://getbootstrap.com/.</span></p><p class="c0"><span>Brutlag, Jake. “Speed Matters.” </span><span class="c1">Google Research Blog</span><span>, June 23, 2009. https://research.googleblog.com/2009/06/speed-matters.html.</span></p><p class="c0"><span>“Dequelabs/axe-Core.” </span><span class="c1">GitHub</span><span>. Accessed August 7, 2016. https://github.com/dequelabs/axe-core.</span></p><p class="c0"><span>“Draft U.S. Web Design Standards Documentation | UI Components.” Accessed October 20, 2016. https://standards.usa.gov/.</span></p><p class="c0"><span>“Ember.js: A Framework for Creating Ambitious Web Applications.” Accessed October 26, 2016. http://emberjs.com/.</span></p><p class="c0"><span>Fielding, Roy T. “Architectural Styles and the Design of Network-Based Software Architectures.” University of California, Irvine, 2000. https://www.ics.uci.edu/~fielding/pubs/dissertation/top.htm.</span></p><p class="c0"><span>“Foundation | The Most Advanced Responsive Front-End Framework in the World.” Accessed October 20, 2016. http://foundation.zurb.com/.</span></p><p class="c0"><span>“Graceful Degradation versus Progressive Enhancement - W3C Wiki.” Accessed June 16, 2016. https://www.w3.org/wiki/Graceful_degradation_versus_progressive_enhancement.</span></p><p class="c0"><span>“Guide to WS-Agreement Model & Protocol.” Accessed June 14, 2016. http://wsag4j.sourceforge.net/site/wsag/overview.html.</span></p><p class="c0"><span>Hogan, Lara Callender. “Designing for Performance by Lara Callender Hogan.” Accessed October 7, 2016. http://designingforperformance.com/.</span></p><p class="c0"><span>jenniferc. “Service Level Agreement Examples: A Total Must for Your Business and Mine!” </span><span class="c1">Udemy Blog</span><span>. Accessed June 14, 2016. https://blog.udemy.com/service-level-agreement-examples/.</span></p><p class="c0"><span>jquery.org, jquery Foundation-. “jQuery.” Accessed October 26, 2016. https://jquery.com/.</span></p><p class="c0"><span>Marcotte, Ethan. “Responsive Web Design.” Accessed June 16, 2016. http://alistapart.com/article/responsive-web-design.</span></p><p class="c0"><span>“OS X Human Interface Guidelines: Designing for Yosemite.” Accessed June 14, 2016. https://developer.apple.com/library/mac/documentation/UserExperience/Conceptual/OSXHIGuidelines/.</span></p><p class="c0"><span>Pernice, Kara, and Jakob Nielsen. “Usability Guidelines for Accessible Web Design: Based on Usability Studies with People Using Assistive Technology.” Nielsen Norman Group, 2001. http://www.nngroup.com/reports/usability-guidelines-accessible-web-design.</span></p><p class="c0"><span>“SLA@SOI.” Accessed June 14, 2016. http://sla-at-soi.eu/.</span></p><p class="c0"><span>“Twitter API Rate Limits.” </span><span class="c1">Twitter Developers</span><span>, 2016. https://dev.twitter.com/rest/public/rate-limiting.</span></p><p class="c0"><span>“WAI-ARIA Overview.” Accessed June 16, 2016. https://www.w3.org/WAI/intro/aria.php.</span></p><p class="c0"><span>“WCAG Overview.” Accessed May 24, 2016. https://www.w3.org/WAI/intro/wcag.</span></p><p class="c0"><span>“Web Accessibility Initiative.” Accessed May 24, 2016. https://www.w3.org/standards/webdesign/accessibility.</span></p><p class="c0"><span>“WPO Stats.” Accessed September 3, 2016. https://wpostats.com/.</span></p><p class="c0 c2"><span></span></p><p class="c2 c3"><span></span></p>
<h1>Documented</h1>
<p class="c1"><span>“18F Handbook - Table of Contents.” Accessed September 12, 2016. https://handbook.18f.gov/.</span></p><p class="c1"><span>“BackHub - Backup and Archive Your GitHub Repositories.” Accessed September 5, 2016. https://backhub.co/.</span></p><p class="c1"><span>Baumann, Ryan. “Thinking about Archival and Migration for GitHub.” </span><span class="c0">Ryan Baumann - /etc</span><span>, August 31, 2016. https://ryanfb.github.io/etc/2016/08/31/thinking_about_archival_and_migration_for_github.html.</span></p><p class="c1"><span>@benbalter. “Benbalter/github-Records-Archiver.” </span><span class="c0">GitHub</span><span>. Accessed September 5, 2016. https://github.com/benbalter/github-records-archiver.</span></p><p class="c1"><span>“Conda Kapsel Tutorial — Conda Documentation.” Accessed July 13, 2016. http://conda.pydata.org/docs/kapsel/.</span></p><p class="c1"><span>“Draft U.S. Web Design Standards | Draft U.S. Web Design Standards.” Accessed June 16, 2016. https://standards.usa.gov/.</span></p><p class="c1"><span>“Introduction - 18F Open Source Style Guide.” Accessed June 16, 2016. https://pages.18f.gov/open-source-guide/.</span></p><p class="c1"><span>“Keep a Changelog.” Accessed October 6, 2016. http://keepachangelog.com/en/0.3.0/.</span></p><p class="c1"><span>@noffle. “Noffle/art-of-Readme.” </span><span class="c0">GitHub</span><span>. Accessed October 7, 2016. https://github.com/noffle/art-of-readme.</span></p><p class="c1"><span>“RAML.” </span><span class="c0">RAML</span><span>. Accessed June 15, 2016. http://raml.org/.</span></p><p class="c1"><span>“Read the Docs.” Accessed June 15, 2016. https://readthedocs.org/.</span></p><p class="c1"><span>“reStructuredText.” Accessed June 15, 2016. http://docutils.sourceforge.net/rst.html.</span></p><p class="c1"><span>“Sphinx 1.4.4 Documentation.” Accessed June 15, 2016. http://www.sphinx-doc.org/en/stable/index.html.</span></p><p class="c1"><span>“Swagger – The World’s Most Popular Framework for APIs.” Accessed June 15, 2016. http://swagger.io/.</span></p><p class="c1"><span>@weavejester. “Codox.” </span><span class="c0">Codox: Clojure Documentation Tool</span><span>. Accessed June 15, 2016. https://github.com/weavejester/codox.</span></p><p class="c1 c3"><span></span></p><p class="c2"><span></span></p>
<h1>Secure</h1>
<p class="c1"><span>“API Resource Guide, API Security.” </span><span class="c3">API Management Blog - Akana</span><span>, February 20, 2014. https://blog.akana.com/api-security-resource-guide/.</span></p><p class="c1"><span>“Google VSAQ: Vendor Security Assessment Questionnaire.” </span><span class="c3">Google VSAQ</span><span>. Accessed May 24, 2016. https://github.com/google/vsaq.</span></p><p class="c1"><span>“InCommon Certificate Service.” Accessed June 14, 2016. https://www.incommon.org/certificates/.</span></p><p class="c1"><span>“Indexing HTTPS Pages by Default.” </span><span class="c3">Google Online Security Blog</span><span>, December 17, 2015. https://security.googleblog.com/2015/12/indexing-https-pages-by-default.html.</span></p><p class="c1"><span>“Introduction to Container Security.” Docker, March 18, 2015. https://d3oypxn00j2a10.cloudfront.net/assets/img/Docker%20Security/WP_Intro_to_container_security_03.20.2015.pdf.</span></p><p class="c1"><span>“Let’s Encrypt - Free SSL/TLS Certificates.” Accessed June 14, 2016. https://letsencrypt.org/.</span></p><p class="c1"><span>“Mozilla/http-Observatory.” </span><span class="c3">GitHub</span><span>. Accessed September 5, 2016. https://github.com/mozilla/http-observatory.</span></p><p class="c1"><span>“OWASP.” </span><span class="c3">The Open Web Application Security Project</span><span>. Accessed May 24, 2016. https://www.owasp.org/index.php/Main_Page.</span></p><p class="c1"><span>“OWASP/DevGuide.” </span><span class="c3">GitHub</span><span>. Accessed June 13, 2016. https://github.com/OWASP/DevGuide.</span></p><p class="c1"><span>“Public Licenses and Data: So What to Do Instead? – Luis Villa: Open Law and Strategy.” Accessed October 7, 2016. http://lu.is/blog/2016/09/26/public-licenses-and-data-so-what-to-do-instead/.</span></p><p class="c1"><span>“QCon NewYork 2016: The Verification of a Distributed System.” </span><span class="c3">Speaker Deck</span><span>. Accessed June 15, 2016. https://speakerdeck.com/caitiem20/qcon-newyork-2016-the-verification-of-a-distributed-system.</span></p><p class="c1"><span>“StartSSL</span><span class="c0">TM</span><span> Certificates & Public Key Infrastructure.” Accessed June 14, 2016. https://www.startssl.com/StartEncrypt.</span></p><p class="c1 c2"><span></span></p><p class="c2 c4"><span></span></p>
<h1>Sharable</h1>
<p class="c0"><span>Calamito, Anthony. “Understanding The Flexibility of Open Source Licensing.” </span><span class="c1">Boundless</span><span>, June 21, 2016. http://boundlessgeo.com/2016/06/understanding-the-flexibility-of-open-source-licensing/.</span></p><p class="c0"><span>“Choose an Open Source License.” </span><span class="c1">Choose a License</span><span>. Accessed June 13, 2016. http://choosealicense.com/.</span></p><p class="c0"><span>“CLAHub.” </span><span class="c1">Contributor License Agreements on Github</span><span>. Accessed May 24, 2016. https://www.clahub.com/.</span></p><p class="c0"><span>“Creative Commons.” </span><span class="c1">Creative Commons</span><span>. Accessed June 16, 2016. https://creativecommons.org/.</span></p><p class="c0"><span>Eghbal, Nadia. “Contributing Guides: A Template,” n.d. https://github.com/nayafia/contributing-template.</span></p><p class="c0"><span>Ehmke, Coraline Ada. “Contributor Covenant: A Code of Conduct for Open Source Projects.,” 2014. http://contributor-covenant.org/.</span></p><p class="c0"><span>“Federal Source Code Policy | Introduction.” Accessed September 14, 2016. https://sourcecode.cio.gov/.</span></p><p class="c0"><span>Holdren, John P. “Increasing Access to the Results of Federally Funded Scientific Research,” February 22, 2013. https://www.whitehouse.gov/sites/default/files/microsites/ostp/ostp_public_access_memo_2013.pdf.</span></p><p class="c0"><span>“OSTP Initiatives.” </span><span class="c1">The White House</span><span>. Accessed September 26, 2016. https://www.whitehouse.gov/node/232081.</span></p><p class="c0"><span>@potch. “No Maintenance Intended,” 2016. http://unmaintained.tech/.</span></p><p class="c0"><span>Uhlir, P. (ed.), G. (ed.) Clement, and RDA-CODATA Legal Interoperability Interest Group. “Legal Interoperability Principles and Implementation Guidelines_Final.pdf.” Research Data Alliance & CODATA, September 8, 2016. https://rd-alliance.org/sites/default/files/attachment/Legal%20Interoperability%20Principles%20and%20Implementation%20Guidelines_Final.pdf.</span></p><p class="c0 c2"><span></span></p><p class="c2 c4"><span></span></p>
<h1>Governed</h1>
<p class="c0"><span>Barcellini, Flore, Françoise Détienne, and Jean-Marie Burkhardt. “A Situated Approach of Roles and Participation in Open Source Software Communities.” </span><span class="c1">Human–Computer Interaction</span><span> 29, no. 3 (May 4, 2014): 205–55. doi:10.1080/07370024.2013.812409.</span></p><p class="c0"><span>Baysal, Olga, Oleksii Kononenko, Reid Holmes, and Michael W. Godfrey. “The Secret Life of Patches: A Firefox Case Study.” In </span><span class="c1">Proceedings of the 2012 19th Working Conference on Reverse Engineering</span><span>, 447–55. WCRE ’12. Washington, DC, USA: IEEE Computer Society, 2012. doi:10.1109/WCRE.2012.54.</span></p><p class="c0"><span>“Best Practices Criteria for Free/Libre and Open Source Software (FLOSS) (version 0.8.0).” </span><span class="c1">Linux Foundation</span><span>, n.d. https://github.com/linuxfoundation/cii-best-practices-badge/blob/master/doc/criteria.md.</span></p><p class="c0"><span>Chełkowski, Tadeusz, Peter Gloor, and Dariusz Jemielniak. “Inequalities in Open Source Software Development: Analysis of Contributor’s Commits in Apache Software Foundation Projects.” </span><span class="c1">PLoS ONE</span><span> 11, no. 4 (April 20, 2016). doi:10.1371/journal.pone.0152976.</span></p><p class="c0"><span>“Ecological Studies of Open Source Software Ecosystems.” Accessed May 24, 2016. http://informatique.umons.ac.be/genlog/projects/ecos/.</span></p><p class="c0"><span>Eghbal, Nadia. “Contributing Guides: A Template,” n.d. https://github.com/nayafia/contributing-template.</span></p><p class="c0"><span>———. “Posted Slides from My @codeconf Talk on Liberal Contribution Models: http://www.slideshare.net/NadiaEghbal/emerging-Models-for-Open-Source-Contributions … The History Was Fun to Research!” Microblog. </span><span class="c1">@nayafia</span><span>, July 14, 2016. https://twitter.com/nayafia/status/753599900454121472.</span></p><p class="c0"><span>Ehmke, Coraline Ada. “Contributor Covenant: A Code of Conduct for Open Source Projects.,” 2014. http://contributor-covenant.org/.</span></p><p class="c0"><span>“Emerging Models for Open Source Contributions.” 14:35:29 UTC. http://www.slideshare.net/NadiaEghbal/emerging-models-for-open-source-contributions.</span></p><p class="c0"><span>Fitzgerald, Brian, and Klaas-Jan Stol. “Continuous Software Engineering and Beyond: Trends and Challenges.” In </span><span class="c1">Proceedings of the 1st International Workshop on Rapid Continuous Software Engineering</span><span>, 1–9. RCoSE 2014. New York, NY, USA: ACM, 2014. doi:10.1145/2593812.2593813.</span></p><p class="c0"><span>Fogel, Karl. “Producing Open Source Software.” Accessed May 24, 2016. http://producingoss.com/en/producingoss.html.</span></p><p class="c0"><span>Gharehyazie, Mohammad, Daryl Posnett, Bogdan Vasilescu, and Vladimir Filkov. “Developer Initiation and Social Interactions in OSS: A Case Study of the Apache Software Foundation.” </span><span class="c1">Empirical Software Engineering</span><span> 20, no. 5 (August 22, 2014): 1318–53. doi:10.1007/s10664-014-9332-x.</span></p><p class="c0"><span>“GitHub Community Guidelines - User Documentation.” Accessed October 24, 2016. https://help.github.com/articles/github-community-guidelines/.</span></p><p class="c0"><span>Marlow, Jennifer, Laura Dabbish, and Jim Herbsleb. “Impression Formation in Online Peer Production: Activity Traces and Personal Profiles in Github.” In </span><span class="c1">Proceedings of the 2013 Conference on Computer Supported Cooperative Work</span><span>, 117–28. CSCW ’13. New York, NY, USA: ACM, 2013. doi:10.1145/2441776.2441792.</span></p><p class="c0"><span>Moe, Nils Brede, Aybüke Aurum, and Tore Dybå. “Challenges of Shared Decision-Making: A Multiple Case Study of Agile Software Development.” </span><span class="c1">Information and Software Technology</span><span>, Special Issue: Voice of the Editorial BoardSpecial Issue: Voice of the Editorial Board, 54, no. 8 (August 2012): 853–65. doi:10.1016/j.infsof.2011.11.006.</span></p><p class="c0"><span>“Onboarding at rOpenSci: A Year in Reviews.” Website. Accessed July 2, 2016. /blog/2016/03/28/software-review.</span></p><p class="c0"><span>“Practices Perfected In OSS Can Reshape Enterprise Development.” </span><span class="c1">The Npm Blog</span><span>. Accessed May 24, 2016. http://blog.npmjs.org/post/139373244435/practices-perfected-in-oss-can-reshape-enterprise.</span></p><p class="c0"><span>Scott, Adam. “Ethical Web Development,” 2016. https://ethicalweb.org/.</span></p><p class="c0"><span>Silva, F. Q. B. d, S. S. J. O. Cruz, T. B. Gouveia, and L. F. Capretz. “Using Meta-Ethnography to Synthesize Research: A Worked Example of the Relations between Personality and Software Team Processes.” In </span><span class="c1">2013 ACM / IEEE International Symposium on Empirical Software Engineering and Measurement</span><span>, 153–62, 2013. doi:10.1109/ESEM.2013.11.</span></p><p class="c0"><span>Smith, Arfon. “The Shape of Open Source.” </span><span class="c1">GitHub</span><span>, June 23, 2016. https://github.com/blog/2195-the-shape-of-open-source.</span></p><p class="c0"><span>Steinmacher, Igor, Marco Aurelio Graciotto Silva, Marco Aurelio Gerosa, and David F. Redmiles. “A Systematic Literature Review on the Barriers Faced by Newcomers to Open Source Software Projects.” </span><span class="c1">Information and Software Technology</span><span> 59 (March 2015): 67–85. doi:10.1016/j.infsof.2014.11.001.</span></p><p class="c0"><span>“Test Double | Our Thinking | The Social Coding Contract.” Accessed July 13, 2016. http://blog.testdouble.com/posts/2014-12-02-the-social-coding-contract.html.</span></p><p class="c0"><span>“The Agile Design Team Maturity Scale | UX Magazine.” Accessed July 16, 2016. http://uxmag.com/articles/the-agile-design-team-maturity-scale.</span></p><p class="c0"><span>“Top 5 Open Source Community Metrics to Track.” </span><span class="c1">Opensource.com</span><span>. Accessed September 5, 2016. https://opensource.com/business/15/12/top-5-open-source-community-metrics-track.</span></p><p class="c0"><span>“Understanding the GitHub Flow · GitHub Guides.” Accessed June 15, 2016. https://guides.github.com/introduction/flow/.</span></p><p class="c0"><span>West, Joel, and Siobhan O’Mahony. “Contrasting Community Building in Sponsored and Community Founded Open Source Projects.” In </span><span class="c1">Proceedings of the Proceedings of the 38th Annual Hawaii International Conference on System Sciences - Volume 07</span><span>, 196.3 – . HICSS ’05. Washington, DC, USA: IEEE Computer Society, 2005. doi:10.1109/HICSS.2005.166.</span></p><p class="c0"><span>Williams, Laurie. “What Agile Teams Think of Agile Principles.” </span><span class="c1">Commun. ACM</span><span> 55, no. 4 (April 2012): 71–76. doi:10.1145/2133806.2133823.</span></p><p class="c0 c3"><span></span></p><p class="c2"><span></span></p>
<h1>Code as Research Products</h1>
<p class="c0"><span>Alter, George, George C Banks, Denny Borsboom, Sara D Bowman, Steven J Breckler, Stuart Buck, Chris Chambers, et al. </span><span class="c1">Transparency and Openness Promotion (TOP) Guidelines</span><span>. Open Science Framework, 2016. osf.io/9f6gx.</span></p><p class="c0"><span>“BackHub - Backup and Archive Your GitHub Repositories.” Accessed September 5, 2016. https://backhub.co/.</span></p><p class="c0"><span>Baumann, Ryan. “Thinking about Archival and Migration for GitHub.” </span><span class="c1">Ryan Baumann - /etc</span><span>, August 31, 2016. https://ryanfb.github.io/etc/2016/08/31/thinking_about_archival_and_migration_for_github.html.</span></p><p class="c0"><span>@benbalter. “Benbalter/github-Records-Archiver.” </span><span class="c1">GitHub</span><span>. Accessed September 5, 2016. https://github.com/benbalter/github-records-archiver.</span></p><p class="c0"><span>Car, Nicholas. “Data Reuse Fitness Assessment Using Provenance.” Denver, CO, 2016. http://www.scidatacon.org/2016/sessions/53/paper/47/.</span></p><p class="c0"><span>“Center for Trustworthy Scientific Cyberinfrastructure.” </span><span class="c1">Center for Trustworthy Scientific Cyberinfrastructure</span><span>. Accessed May 24, 2016. http://trustedci.org/.</span></p><p class="c0"><span>“Codemeta/codemeta.” </span><span class="c1">GitHub</span><span>. Accessed June 1, 2016. https://github.com/codemeta/codemeta.</span></p><p class="c0"><span>“Cookiecutter Data Science.” Accessed October 31, 2016. https://drivendata.github.io/cookiecutter-data-science/.</span></p><p class="c0"><span>“CRediT.” </span><span class="c1">CASRAI</span><span>, April 18, 2016. http://casrai.org/credit.</span></p><p class="c0"><span>“Dagstuhl Seminar on Reproducibility.” </span><span class="c1">RDA</span><span>, September 17, 2016. https://rd-alliance.org/dagstuhl-seminar-reproducibility.</span></p><p class="c0"><span>“DASPOS.” Accessed May 24, 2016. https://daspos.crc.nd.edu/.</span></p><p class="c0"><span>“Data and Code Sharing Roundtable.” Accessed September 14, 2016. http://web.stanford.edu/~vcs/Conferences/RoundtableNov212009/.</span></p><p class="c0"><span>“Depsy.” Accessed May 26, 2016. http://depsy.org/.</span></p><p class="c0"><span>“Duecredit/duecredit.” </span><span class="c1">Duecredit</span><span>. Accessed May 24, 2016. https://github.com/duecredit/duecredit.</span></p><p class="c0"><span>“ECO-OP.” </span><span class="c1">ECO-OP Repository</span><span>, 2015. https://github.com/tetherless-world/ecoop.</span></p><p class="c0"><span>“ECOOP Prov Capture Ontology.” Accessed October 28, 2016. http://cmapspublic3.ihmc.us/rid=1M8GX7GPX-1B78PMS-15CC/ECOOP%20pro.</span></p><p class="c0"><span>Freire, Juliana, Norbert Fuhr, and Andreas Rauber. “Reproducibility of Data-Oriented Experiments in E-Science (Dagstuhl Seminar 16041).” Edited by Juliana Freire, Norbert Fuhr, and Andreas Rauber. </span><span class="c1">Dagstuhl Reports</span><span> 6, no. 1 (2016): 108–59. doi:http://dx.doi.org/10.4230/DagRep.6.1.108.</span></p><p class="c0"><span>Gent, Ian, Catherine Jones, and Brian Matthews. “GUIDELINES FOR PERSISTENTLY IDENTIFYING SOFTWARE USING DATACITE: A JISC RESEARCH DATA SPRING PROJECT,” September 2015. http://rrr.cs.st-andrews.ac.uk/wp-content/uploads/2015/10/guidelines-software-identification.pdf.</span></p><p class="c0"><span>Gil, Yolanda, Cédric H. David, Ibrahim Demir, Bakinam T. Essawy, Robinson W. Fulweiler, Jonathan L. Goodall, Leif Karlstrom, et al. “Towards the Geoscience Paper of the Future: Best Practices for Documenting and Sharing Research from Data to Software to Provenance.” </span><span class="c1">Earth and Space Science</span><span>, July 1, 2016, 2015EA000136. doi:10.1002/2015EA000136.</span></p><p class="c0"><span>Gutzman, Karen, Stacy Konkiel, Marijane White, Matthew Brush, Violeta Ilik, Michael Conlon, Melissa Haendel, and Kristi Holmes. “Attribution of Work in the Scholarly Ecosystem,” April 13, 2016. https://figshare.com/articles/Attribution_of_Work_in_the_Scholarly_Ecosystem/3175198.</span></p><p class="c0"><span>“ICSU Statute 5 — ICSU.” Page. Accessed September 14, 2016. http://www.icsu.org/freedom-responsibility/cfrs/statute-5.</span></p><p class="c0"><span>“Image Processing On Line: Software Guidelines.” Accessed October 7, 2016. https://tools.ipol.im/wiki/ref/software_guidelines/#implementation.</span></p><p class="c0"><span>@jlevy. “Jlevy/ghizmo.” </span><span class="c1">GitHub</span><span>. Accessed October 25, 2016. https://github.com/jlevy/ghizmo.</span></p><p class="c0"><span>“Journal of Open Research Software.” Accessed October 17, 2016. http://openresearchsoftware.metajnl.com/.</span></p><p class="c0"><span>“Making Your Code Citable · GitHub Guides.” Accessed September 28, 2016. https://guides.github.com/activities/citable-code/.</span></p><p class="c0"><span>Ma, Xiaogang, Stace E. Beaulieu, Linyun Fu, Peter Fox, Massimo Di Stefano, and Patrick West. “Documenting Provenance for Reproducible Marine Ecosystem Assessment in Open Science.” In </span><span class="c1">Oceanographic and Marine Cross-Domain Data Management for Sustainable Development</span><span>, edited by Paolo Diviacco, Adam Leadbetter, and Helen Glaves, 100–126. Hershey, PA, 2017. http://www.igi-global.com/chapter/documenting-provenance-for-reproducible-marine-ecosystem-assessment-in-open-science/166838.</span></p><p class="c0"><span>Nosek, B. A., G. Alter, G. C. Banks, D. Borsboom, S. D. Bowman, S. J. Breckler, S. Buck, et al. “Promoting an Open Research Culture.” </span><span class="c1">Science</span><span> 348, no. 6242 (June 26, 2015): 1422–25. doi:10.1126/science.aab2374.</span></p><p class="c0"><span>“Openrif/contribution-Ontology.” </span><span class="c1">GitHub</span><span>. Accessed June 23, 2016. https://github.com/openrif/contribution-ontology.</span></p><p class="c0"><span>“OSTP Initiatives.” </span><span class="c1">The White House</span><span>. Accessed September 26, 2016. https://www.whitehouse.gov/node/232081.</span></p><p class="c0"><span>Piccolo, Stephen R., and Michael B. Frampton. “Tools and Techniques for Computational Reproducibility.” </span><span class="c1">GigaScience</span><span> 5 (2016): 30. doi:10.1186/s13742-016-0135-4.</span></p><p class="c0"><span>Priem, J., D. Taraborelli, P. Groth, and C. Neylon. “Altmetrics: A Manifesto.” </span><span class="c1">Altmetrics: A Manifesto</span><span>, October 26, 2010. http://altmetrics.org/manifesto/.</span></p><p class="c0"><span>“ProjectTIER/ProjectTIER_R.” </span><span class="c1">GitHub</span><span>. Accessed August 3, 2016. https://github.com/ProjectTIER/ProjectTIER_R.</span></p><p class="c0"><span>“ProjectTIER/ProjectTIER_STATA.” </span><span class="c1">GitHub</span><span>. Accessed August 3, 2016. https://github.com/ProjectTIER/ProjectTIER_STATA.</span></p><p class="c0"><span>“Project TIER Protocol v2.0.” Accessed August 3, 2016. https://www.haverford.edu/project-tier/protocol-v2.</span></p><p class="c0"><span>Ratnakar, Varun, and Yolanda Gil. “Ontosoft.” </span><span class="c1">Ontosoft</span><span>. Accessed May 24, 2016. http://ontosoft.org/ontology/software/.</span></p><p class="c0"><span>“Reproducible-Builds.org.” </span><span class="c1">Reproducible Builds</span><span>. Accessed May 24, 2016. https://reproducible-builds.org/.</span></p><p class="c0"><span>“Result and Artifact Review and Badging — Association for Computing Machinery.” Accessed June 27, 2016. http://www.acm.org/publications/policies/artifact-review-badging.</span></p><p class="c0"><span>“RRR « Reuse, Repurposing, Reproducibility.” Accessed September 23, 2016. http://rrr.cs.st-andrews.ac.uk/.</span></p><p class="c0"><span>Smith, Arfon M., Daniel S. Katz, Kyle E. Niemeyer, and FORCE11 Software Citation Working Group. “Software Citation Principles.” </span><span class="c1">PeerJ Computer Science</span><span> 2 (September 19, 2016): e86. doi:10.7717/peerj-cs.86.</span></p><p class="c0"><span>“Software Heritage.” Accessed December 6, 2016. https://www.softwareheritage.org/.</span></p><p class="c0"><span>“Software Preservation Network.” Accessed June 16, 2016. http://www.softwarepreservationnetwork.org/.</span></p><p class="c0"><span class="c1">SoftwareX</span><span>. Accessed June 16, 2016. http://www.journals.elsevier.com/softwarex/.</span></p><p class="c0"><span>Stodden, Victoria, and Sheila Miguez. “Best Practices for Computational Science: Software Infrastructure and Environments for Reproducible and Extensible Research.” </span><span class="c1">Journal of Open Research Software</span><span> 2, no. 1 (July 9, 2014). doi:10.5334/jors.ay.</span></p><p class="c0"><span>“The Journal of Open Source Software Reviewer Guidelines.” </span><span class="c1">The Journal of Open Source Software</span><span>. Accessed July 2, 2016. http://joss.theoj.org/about#reviewer_guidelines.</span></p><p class="c0"><span>“The Open Definition - Open Definition - Defining Open in Open Data, Open Content and Open Knowledge.” Accessed May 24, 2016. http://opendefinition.org/.</span></p><p class="c0"><span>“The PRIMAD Model of Reproducibility.” Accessed October 7, 2016. http://www.is.informatik.uni-duisburg.de/bib/docs/Fuhr_16z.html.en.</span></p><p class="c0"><span>“The ReScience Journal.” Accessed September 26, 2016. http://rescience.github.io/.</span></p><p class="c0"><span>“The Software Credit Ontology.” Accessed August 15, 2016. https://dagstuhleas.github.io/SoftwareCreditRoles/doc/index-en.html.</span></p><p class="c0"><span>Uhlir, P. (ed.), G. (ed.) Clement, and RDA-CODATA Legal Interoperability Interest Group. “Legal Interoperability Principles and Implementation Guidelines_Final.pdf.” Research Data Alliance & CODATA, September 8, 2016. https://rd-alliance.org/sites/default/files/attachment/Legal%20Interoperability%20Principles%20and%20Implementation%20Guidelines_Final.pdf.</span></p>
<h1>Sustainability & Reusability/Adoption</h1>
<p class="c0"><span>“6 Things to Know About Successful (and Failed) Open-Source Software.” Accessed June 1, 2016. http://mediashift.org/2013/08/6-things-to-know-about-successful-open-source-software/.</span></p><p class="c0"><span>“2016 Software Infrastructure for Sustained Innovation (SI2) PI Workshop Report.” Arlington, VA: Software Infrastructure for Sustained Innovation (SI2) Principal Investigators (PI), February 16, 2016. http://cococubed.asu.edu/si2_pi_workshop_2016/ewExternalFiles/SI2_PI_2016_report_final-1.pdf.</span></p><p class="c0"><span>“All the Apache Streaming Projects: An Exploratory Guide.” </span><span class="c1">The New Stack</span><span>, July 8, 2016. http://thenewstack.io/apache-streaming-projects-exploratory-guide/.</span></p><p class="c0"><span>“Billions at Stake in University Patent Fights.” </span><span class="c1">Bloomberg.com</span><span>. Accessed July 9, 2016. http://www.bloomberg.com/graphics/2016-university-patents/.</span></p><p class="c0"><span>Buckley, Jim, Tom Mens, Matthias Zenger, Awais Rashid, and Günter Kniesel. “Towards a Taxonomy of Software Change: Research Articles.” </span><span class="c1">J. Softw. Maint. Evol.</span><span> 17, no. 5 (September 2005): 309–32. doi:10.1002/smr.v17:5.</span></p><p class="c0"><span>Donker, Frederika Welle, and Bastiaan van Loenen. “How to Assess the Success of the Open Data Ecosystem?” </span><span class="c1">International Journal of Digital Earth</span><span> 0, no. 0 (September 9, 2016): 1–23. doi:10.1080/17538947.2016.1224938.</span></p><p class="c0"><span>“Funding - Django REST Framework.” Accessed June 17, 2016. https://fund.django-rest-framework.org/topics/funding/.</span></p><p class="c0"><span>“Funding Open Source with Marketing Money — Surfing in Kansas.” Accessed September 3, 2016. http://ericholscher.com/blog/2016/aug/31/funding-oss-marketing-money/.</span></p><p class="c0"><span>Gousios, Georgios, Martin Pinzger, and Arie van Deursen. “An Exploratory Study of the Pull-Based Software Development Model.” In </span><span class="c1">Proceedings of the 36th International Conference on Software Engineering</span><span>, 345–55. ICSE 2014. New York, NY, USA: ACM, 2014. doi:10.1145/2568225.2568260.</span></p><p class="c0"><span>Gousios, Georgios, Andy Zaidman, Margaret-Anne Storey, and Arie van Deursen. “Work Practices and Challenges in Pull-Based Development: The Integrator’s Perspective.” In </span><span class="c1">Proceedings of the 37th International Conference on Software Engineering - Volume 1</span><span>, 358–68. ICSE ’15. Piscataway, NJ, USA: IEEE Press, 2015. http://dl.acm.org/citation.cfm?id=2818754.2818800.</span></p><p class="c0"><span>Gumm, Dorina C. “Distribution Dimensions in Software Development Projects: A Taxonomy.” </span><span class="c1">IEEE Softw.</span><span> 23, no. 5 (September 2006): 45–51. doi:10.1109/MS.2006.122.</span></p><p class="c0"><span>Guzmán, Liliana, Constanza Lampasona, Carolyn Seaman, and Dieter Rombach. “Survey on Research Synthesis in Software Engineering.” In </span><span class="c1">Proceedings of the 18th International Conference on Evaluation and Assessment in Software Engineering</span><span>, 2:1–2:10. EASE ’14. New York, NY, USA: ACM, 2014. doi:10.1145/2601248.2601273.</span></p><p class="c0"><span>Hettrick, Simon, Neil Chue Hong, Les Carr, David De Roure, Giacomo Peru, Stephen Crouch, Aleksandra Nenadic, et al. “UK Research Software Survey 2014.” </span><span class="c1">Zenodo</span><span>, December 4, 2014. doi:10.5281/zenodo.14809.</span></p><p class="c0"><span>Hong, Neil Chue. “Open Software for Open Science,” May 23, 2015. https://figshare.com/articles/Open_Software_for_Open_Science/1424440.</span></p><p class="c0"><span>Huang, Xing, Xianghua Ding, Charlotte P. Lee, Tun Lu, and Ning Gu. “Meanings and Boundaries of Scientific Software Sharing.” In </span><span class="c1">Proceedings of the 2013 Conference on Computer Supported Cooperative Work</span><span>, 423–34. CSCW ’13. New York, NY, USA: ACM, 2013. doi:10.1145/2441776.2441825.</span></p><p class="c0"><span>Huang, X., T. Lu, X. Ding, T. Liu, and N. Gu. “A Provenance-Based Solution for Software Selection in Scientific Software Sharing.” In </span><span class="c1">2013 IEEE 17th International Conference on Computer Supported Cooperative Work in Design (CSCWD)</span><span>, 172–77, 2013. doi:10.1109/CSCWD.2013.6580958.</span></p><p class="c0"><span>“Icecrime/vossibility-Stack.” </span><span class="c1">GitHub</span><span>. Accessed October 29, 2016. https://github.com/icecrime/vossibility-stack.</span></p><p class="c0"><span>“istlab/Alitheia-Core.” </span><span class="c1">GitHub</span><span>. Accessed June 1, 2016. https://github.com/istlab/Alitheia-Core.</span></p><p class="c0"><span>Joppa, Lucas N., Greg McInerny, Richard Harper, Lara Salido, Kenji Takeda, Kenton O’Hara, David Gavaghan, and Stephen Emmott. “Troubling Trends in Scientific Software Use.” </span><span class="c1">Science</span><span> 340, no. 6134 (May 17, 2013): 814–15. doi:10.1126/science.1231535.</span></p><p class="c0"><span>Kalliamvakou, Eirini, Georgios Gousios, Kelly Blincoe, Leif Singer, Daniel M. German, and Daniela Damian. “The Promises and Perils of Mining GitHub.” In </span><span class="c1">Proceedings of the 11th Working Conference on Mining Software Repositories</span><span>, 92–101. MSR 2014. New York, NY, USA: ACM, 2014. doi:10.1145/2597073.2597074.</span></p><p class="c0"><span>Katz, Daniel S. “Danielskatz/sustaining-Research-Projects.” </span><span class="c1">GitHub</span><span>, 2016. https://github.com/danielskatz/sustaining-research-projects.</span></p><p class="c0"><span>Keyes, David, and Valerie Taylor. “National Science Foundation Advisory Committee for CyberInfrastructure Task Force on Software for Science and Engineering.” National Science Foundation, March 2011. https://www.nsf.gov/cise/aci/taskforces/TaskForceReport_Software.pdf.</span></p><p class="c0"><span>Liu, Manlu, Clyde Eiríkur Hull, and Yu-Ting Caisy Hung. “Starting Open Source Collaborative Innovation: The Antecedents of Network Formation in Community Source.” </span><span class="c1">Information Systems Journal</span><span>, January 1, 2016, n/a – n/a. doi:10.1111/isj.12113.</span></p><p class="c0"><span>“LuaJIT Sponsorship Program.” Accessed September 12, 2016. http://luajit.org/sponsors.html.</span></p><p class="c0"><span>Marlow, Jennifer, Laura Dabbish, and Jim Herbsleb. “Impression Formation in Online Peer Production: Activity Traces and Personal Profiles in Github.” In </span><span class="c1">Proceedings of the 2013 Conference on Computer Supported Cooperative Work</span><span>, 117–28. CSCW ’13. New York, NY, USA: ACM, 2013. doi:10.1145/2441776.2441792.</span></p><p class="c0"><span>“NumFOCUS Receives Grant for Project Sustainability.” </span><span class="c1">NumFOCUS | Open Code = Better Science</span><span>. Accessed July 2, 2016. http://www.numfocus.org/1/post/2016/06/numfocus-receives-grant-for-project-sustainability.html.</span></p><p class="c0"><span>“Open Hub, the Open Source Network.” Accessed September 5, 2016. https://www.openhub.net/.</span></p><p class="c0"><span>“Open Source Collective Is on Open Collective.” Accessed August 19, 2016. https://opencollective.com/opensource.</span></p><p class="c0"><span>Passani, Antonella, Fabiana Monacciani, Shenja Van Der Graaf, Francesca Spagnoli, Francesco Bellini, Marie Debicki, and Paolo Dini. “SEQUOIA: A Methodology for the Socio-Economic Impact Assessment of Software-as-a-Service and Internet of Services Research Projects.” </span><span class="c1">Research Evaluation</span><span> 23, no. 2 (April 1, 2014): 133–49. doi:10.1093/reseval/rvu004.</span></p><p class="c0"><span>Passos, Carol, Daniela S. Cruzes, Tore Dyb\a a, and Manoel Mendonça. “Challenges of Applying Ethnography to Study Software Practices.” In </span><span class="c1">Proceedings of the ACM-IEEE International Symposium on Empirical Software Engineering and Measurement</span><span>, 9–18. ESEM ’12. New York, NY, USA: ACM, 2012. doi:10.1145/2372251.2372255.</span></p><p class="c0"><span>Petersen, Kai, Sairam Vakkalanka, and Ludwik Kuzniarz. “Guidelines for Conducting Systematic Mapping Studies in Software Engineering: An Update.” </span><span class="c1">Information and Software Technology</span><span> 64 (August 2015): 1–18. doi:10.1016/j.infsof.2015.03.007.</span></p><p class="c0"><span>Petre, Marian, and Greg Wilson. “PLOS/Mozilla Scientific Code Review Pilot: Summary of Findings.” </span><span class="c1">CoRR</span><span> abs/1311.2412 (2013). http://arxiv.org/abs/1311.2412.</span></p><p class="c0"><span>“RepoGrams/RepoGrams.” </span><span class="c1">RepoGrams</span><span>. Accessed May 24, 2016. https://github.com/RepoGrams/RepoGrams.</span></p><p class="c0"><span>“Report - S&E Indicators 2016 | NSF - National Science Foundation.” Accessed September 13, 2016. https://nsf.gov/statistics/2016/nsb20161/#/report.</span></p><p class="c0"><span>Rigby, Peter C., and Margaret-Anne Storey. “Understanding Broadcast Based Peer Review on Open Source Software Projects.” In </span><span class="c1">Proceedings of the 33rd International Conference on Software Engineering</span><span>, 541–50. ICSE ’11. New York, NY, USA: ACM, 2011. doi:10.1145/1985793.1985867.</span></p><p class="c0"><span>“Roads and Bridges: The Unseen Labor Behind Our Digital Infrastructure.” </span><span class="c1">Ford Foundation</span><span>. Accessed July 15, 2016. http://www.fordfoundation.org/library/reports-and-studies/roads-and-bridges-the-unseen-labor-behind-our-digital-infrastructure/.</span></p><p class="c0"><span>Sarma, Meera, and Thomas Matheus. “‘Hybrid’ Open Source Software Virtual Communities of Practice – a Conceptual Framework.” </span><span class="c1">Technology Analysis & Strategic Management</span><span> 27, no. 5 (May 28, 2015): 569–85. doi:10.1080/09537325.2015.1019452.</span></p><p class="c0"><span>Smith, Arfon. “The Shape of Open Source.” </span><span class="c1">GitHub</span><span>, June 23, 2016. https://github.com/blog/2195-the-shape-of-open-source.</span></p><p class="c0"><span>Teixeira, Jose, Gregorio Robles, and Jesús M. González-Barahona. “Lessons Learned from Applying Social Network Analysis on an Industrial Free/Libre/Open Source Software Ecosystem.” </span><span class="c1">Journal of Internet Services and Applications</span><span> 6, no. 1 (August 2015). doi:10.1186/s13174-015-0028-2.</span></p><p class="c0"><span>“The Gordon and Betty Moore Foundation Grant for Numba and Dask.” </span><span class="c1">Continuum</span><span>, July 13, 2016. https://www.continuum.io/blog/developer-blog/gordon-and-betty-moore-foundation-grant-numba-and-dask.</span></p><p class="c0"><span>“Top 5 Open Source Community Metrics to Track.” </span><span class="c1">Opensource.com</span><span>. Accessed September 5, 2016. https://opensource.com/business/15/12/top-5-open-source-community-metrics-track.</span></p><p class="c0"><span>“Update on InfluxDB Clustering, High-Availability and Monetization | InfluxData.” Accessed July 2, 2016. https://influxdata.com/blog/update-on-influxdb-clustering-high-availability-and-monetization/.</span></p><p class="c0"><span>Velden, Theresa, Matthew J. Bietz, E. Ilana Diamant, James D. Herbsleb, James Howison, David Ribes, and Stephanie B. Steinhardt. “Sharing, Re-Use and Circulation of Resources in Cooperative Scientific Work.” In </span><span class="c1">Proceedings of the Companion Publication of the 17th ACM Conference on Computer Supported Cooperative Work & Social Computing</span><span>, 347–50. CSCW Companion ’14. New York, NY, USA: ACM, 2014. doi:10.1145/2556420.2558853.</span></p><p class="c0"><span>“Who Sponsors Drupal Development? | Dries Buytaert.” Accessed September 6, 2016. http://buytaert.net/who-sponsors-drupal-development.</span></p><p class="c0"><span>Zilia Iskoujina, and Joanne Roberts. “Knowledge Sharing in Open Source Software Communities: Motivations and Management.” </span><span class="c1">Journal of Knowledge Management</span><span> 19, no. 4 (June 12, 2015): 791–813. doi:10.1108/JKM-10-2014-0446.</span></p><p class="c0 c2"><span></span></p><p class="c2 c3"><span></span></p>
<h1>Software Quality Research</h1>
<p class="c0"><span>Alspaugh, Thomas A. “Kinds of Software Quality (Ilities).” Accessed May 28, 2016. http://www.thomasalspaugh.org/pub/fnd/ility.html.</span></p><p class="c0"><span>“[ARCHIVED] Open Source Maturity Model.” Accessed May 24, 2016. http://oss-watch.ac.uk/resources/archived/osmm#how-the-osmm-compares-against-the-brr.</span></p><p class="c0"><span>Azizian, Nazanin, Shahram Sarkani, and Thomas Mazzuchi. “A Comprehensive Review and Analysis of Maturity Assessment Approaches for Improved Decision Support to Achieve Efficient Defense Acquisition.” In </span><span class="c1">Proceedings of the World Congress on Engineering and Computer Science 2009</span><span>. San Francisco, 2009. http://www.iaeng.org/publication/WCECS2009/WCECS2009_pp1150-1157.pdf.</span></p><p class="c0"><span>Berander, Patrik, Lars-Ola Damm, Jeanette Eriksson, Tony Gorschek, Kennet Henningsson, Per Jönsson, Simon Kågström, et al. </span><span class="c1">Software Quality Attributes and Trade-Offs</span><span>, 2005. http://www.bth.se/com/besq.nsf/(WebFiles)/5A52350A52726F51C12570A8004CB613/$FILE/Software_quality_attributes.pdf.</span></p><p class="c0"><span>Burgess, Annie. “2015 AIST Evaluations Overview.” Federation of Earth Science Information Partners, 2016. http://testbed.esipfed.org/sites/default/files/2015_AIST_Evaluations_Overview.pdf.</span></p><p class="c0"><span>Crouch, Steve, Mike Jackson, and Rob Baxter. “Software Evaluation Guide.” </span><span class="c1">Software Sustainability Institute</span><span>, November 11, 2014. http://www.software.ac.uk/software-evaluation-guide.</span></p><p class="c0"><span>Debattista, Jeremy, Makx Dekkers, Christophe Guéret, Deirdre Lee, Nandana Mihindukulasooriya, and Amrapali Zaveri. “Data on the Web Best Practices: Data Quality Vocabulary,” 2016. https://www.w3.org/TR/vocab-dqv/.</span></p><p class="c0"><span>Downs, Robert R., and James J. Marshall. “A Proposal on Using Reuse Readiness Levels to Measure Software Reusability.” </span><span class="c1">Data Science Journal</span><span> 9 (2010). doi:10.7916/D8ZS2V7W.</span></p><p class="c0"><span>Duijnhouwer, Frans-Wilhelm, and Chris Widdows. “Open Source Maturity Model.” Capgemini, August 2003. http://jose-manuel.me/thesis/references/GB_Expert_Letter_Open_Source_Maturity_Model_1.5.3.pdf.</span></p><p class="c0"><span>“EarthCube Integration and Testing Environment (ECITE) | EarthCube.” Accessed June 1, 2016. http://earthcube.org/group/earthcube-integration-testing-environment-ecite.</span></p><p class="c0"><span>“ESSI-SCOPE Quality Characteristics and Their Application.” Accessed May 24, 2016. http://www.cse.dcu.ie/essiscope/sm2/9126ref.html.</span></p><p class="c0"><span>Graybeal, John. “ESIP Technology Evaluation Framework.” </span><span class="c1">GitHub</span><span>, February 10, 2016. https://github.com/ESIPFed/technology-evaluation-framework.</span></p><p class="c0"><span>———. “ESIP Technology Evaluation Framework Final Recommendations,” January 2016. http://wiki.esipfed.org/images/7/73/ESIP_Technology_Evaluation_Framework_Recommendations.pdf.</span></p><p class="c0"><span>Hettrick, Simon. “Research Software Sustainability: Report on a Knowledge Exchange Workshop.” The Software Sustainability Institute, February 2016. http://repository.jisc.ac.uk/6332/1/Research_Software_Sustainability_Report_on_KE_Workshop_Feb_2016_FINAL.pdf.</span></p><p class="c0"><span>“ISO 25010.” Accessed May 25, 2016. http://iso25000.com/index.php/en/iso-25000-standards/iso-25010?limit=3&limitstart=0.</span></p><p class="c0"><span>“ISO/EIC 9126-1,” 2000. http://www.cse.unsw.edu.au/~cs3710/PMmaterials/Resources/9126-1%20Standard.pdf.</span></p><p class="c0"><span>“ISO/IEC 25010:2011 - Systems and Software Engineering -- Systems and Software Quality Requirements and Evaluation (SQuaRE) -- System and Software Quality Models.” </span><span class="c1">ISO</span><span>. Accessed May 24, 2016. http://www.iso.org/iso/home/store/catalogue_ics/catalogue_detail_ics.htm?csnumber=35733.</span></p><p class="c0"><span>Jackson, Mike, Steve Crouch, and Rob Baxter. “Software Evaluation: Criteria-Based Assessment.” Software Sustainability Institure, November 2011. http://software.ac.uk/sites/default/files/SSI-SoftwareEvaluationCriteria.pdf.</span></p><p class="c0"><span>Mattmann, Chris A., Robert R. Downs, James J. Marshall, Neal F. Most, and Shahin Samadi. “TOOLS TO SUPPORT THE REUSE OF SOFTWARE ASSETS FOR THE NASA EARTH SCIENCE DECADAL SURVEY MISSIONS.” </span><span class="c1">IEEE Geoscience and Remote Sensing Society Newsletter</span><span>, March 2011. http://ntrs.nasa.gov/archive/nasa/casi.ntrs.nasa.gov/20120010312.pdf.</span></p><p class="c0"><span>Miguel, Jóse P., David Mauricio, and Glen Rodríguez. “A Review of Software Quality Models for the Evaluation of Software Products.” </span><span class="c1">International Journal of Software Engineering & Applications (IJSEA),</span><span> 5, no. 6 (November 2014). doi:DOI : 10.5121/ijsea.2014.5603.</span></p><p class="c0"><span>“NASA Technology Readiness Levels,” October 28, 2012. https://www.nasa.gov/directorates/heo/scan/engineering/technology/txt_accordion1.html.</span></p><p class="c0"><span>“Reuse Readiness Levels (RRLs).” NASA Earth Science Data Systems - Software Reuse Working Group, April 30, 2010. https://earthdata.nasa.gov/files/RRLs_v1.0.pdf.</span></p><p class="c0"><span>“SQA Software Quality Assurance: FURPS.” Accessed May 24, 2016. http://www.sqa.net/index.htm#furps.</span></p><p class="c0"><span>“SQA Software Quality Assurance in Practice.” Accessed May 24, 2016. http://www.sqa.net/sqa-practice.html.</span></p><p class="c0"><span>“SQC Software Quality Control.” Accessed May 24, 2016. http://www.sqa.net/softwarequalityattributes.html.</span></p><p class="c0"><span>Stig, Daniel Corin, Ulf Högman, and Dag Bergsjö. “Assessment for the Readiness for Internal Technology Transfer - A Case Study,” 2011. http://www.ics.kth.se/INCOSE/Assesment%20of%20Readiness%20for%20Internal%20Technology%20Transfer.pdf.</span></p><p class="c0"><span>Urban-Mathieux, Brigitta. “NGDA Lifecycle Maturity Assessment.” </span><span class="c1">GEOPLATFORM.gov</span><span>, n.d. https://cms.geoplatform.gov/A-16-NGDA-Theme-Community/LMA.</span></p><p class="c0"><span>“Welcome to the Standard Technical Evaluation Process Toolkit.” </span><span class="c1">MITRE STEP Toolkit</span><span>. Accessed May 24, 2016. http://www2.mitre.org/work/sepo/toolkits/STEP/.</span></p><p class="c0"><span>Welker, Kurt D. “The Software Maintainability Index Revisited.” </span><span class="c1">The Journal of Defense Software Engineering</span><span>, August 2001. http://static1.1.sqspcdn.com/static/f/702523/9457031/1290003349713/200108-Welker.pdf?token=0hc4bxA%2BnY3KAhFrq0AESeTW0M4%3D.</span></p><p class="c0 c4"><span></span></p><p class="c3"><span></span></p>