GATK4 has requirement that the vcf headers for dbsnp contains a valid sequence dictionary.
We will add a step to reference data download to check that the vcf header is valid with GATK ValidateVariants and potentially fix the header using UpdateVcfSequenceDictionary and FixVcfHeader
GATK4 has requirement that the vcf headers for dbsnp contains a valid sequence dictionary.
We will add a step to reference data download to check that the vcf header is valid with GATK
ValidateVariantsand potentially fix the header usingUpdateVcfSequenceDictionaryandFixVcfHeader