-
- 
-
-```
-* change ig.ini template to name of directory
-```yaml
-;template = fhir.base.template#current
-template = joel-template
-```
-* run ig publisher and view output
-## Setting up the CI build
-* https://github.com/FHIR/auto-ig-builder
-* add .index.json to .gitignore
-* check-in and sync
-* in github.com, go to settings/webhooks, select add webhook
- * payload: https://us-central1-fhir-org-starter-project.cloudfunctions.net/ig-commit-trigger
- * content: application/json
-* edit a file in github, commit, and see it build on the CI build
-## History
-* https://github.com/HL7/fhir-ig-history-template
diff --git a/_gencontinuous.bat b/_gencontinuous.bat
new file mode 100644
index 0000000..ca2867a
--- /dev/null
+++ b/_gencontinuous.bat
@@ -0,0 +1,2 @@
+@ECHO OFF
+CALL ./_genonce.bat -watch
\ No newline at end of file
diff --git a/_gencontinuous.sh b/_gencontinuous.sh
new file mode 100644
index 0000000..b9ac593
--- /dev/null
+++ b/_gencontinuous.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+./_genonce.sh -watch
diff --git a/_genonce.bat b/_genonce.bat
new file mode 100644
index 0000000..a9864ef
--- /dev/null
+++ b/_genonce.bat
@@ -0,0 +1,27 @@
+@ECHO OFF
+SET publisher_jar=publisher.jar
+SET input_cache_path=%CD%\input-cache
+
+ECHO Checking internet connection...
+PING tx.fhir.org -4 -n 1 -w 1000 | FINDSTR TTL && GOTO isonline
+ECHO We're offline...
+SET txoption=-tx n/a
+GOTO igpublish
+
+:isonline
+ECHO We're online
+SET txoption=
+
+:igpublish
+
+SET JAVA_TOOL_OPTIONS=-Dfile.encoding=UTF-8
+
+IF EXIST "%input_cache_path%\%publisher_jar%" (
+ JAVA -jar "%input_cache_path%\%publisher_jar%" -ig . %txoption% %*
+) ELSE If exist "..\%publisher_jar%" (
+ JAVA -jar "..\%publisher_jar%" -ig . %txoption% %*
+) ELSE (
+ ECHO IG Publisher NOT FOUND in input-cache or parent folder. Please run _updatePublisher. Aborting...
+)
+
+PAUSE
diff --git a/_genonce.sh b/_genonce.sh
new file mode 100755
index 0000000..38efcb4
--- /dev/null
+++ b/_genonce.sh
@@ -0,0 +1,28 @@
+#!/bin/bash
+publisher_jar=publisher.jar
+input_cache_path=./input-cache/
+echo Checking internet connection...
+curl -sSf tx.fhir.org > /dev/null
+
+if [ $? -eq 0 ]; then
+ echo "Online"
+ txoption=""
+else
+ echo "Offline"
+ txoption="-tx n/a"
+fi
+
+echo "$txoption"
+
+publisher=$input_cache_path/$publisher_jar
+if test -f "$publisher"; then
+ java -jar $publisher -ig . $txoption $*
+
+else
+ publisher=../$publisher_jar
+ if test -f "$publisher"; then
+ java -jar $publisher -ig . $txoption $*
+ else
+ echo IG Publisher NOT FOUND in input-cache or parent folder. Please run _updatePublisher. Aborting...
+ fi
+fi
diff --git a/_updatePublisher.bat b/_updatePublisher.bat
new file mode 100644
index 0000000..67aebf5
--- /dev/null
+++ b/_updatePublisher.bat
@@ -0,0 +1,219 @@
+@ECHO OFF
+
+SETLOCAL
+
+SET dlurl=https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar
+SET publisher_jar=publisher.jar
+SET input_cache_path=%CD%\input-cache\
+SET skipPrompts=false
+
+SET scriptdlroot=https://raw.githubusercontent.com/HL7/ig-publisher-scripts/main
+SET update_bat_url=%scriptdlroot%/_updatePublisher.bat
+SET gen_bat_url=%scriptdlroot%/_genonce.bat
+SET gencont_bat_url=%scriptdlroot%/_gencontinuous.bat
+SET gencont_sh_url=%scriptdlroot%/_gencontinuous.sh
+SET gen_sh_url=%scriptdlroot%/_genonce.sh
+SET update_sh_url=%scriptdlroot%/_updatePublisher.sh
+
+IF "%~1"=="/f" SET skipPrompts=y
+
+
+ECHO.
+ECHO Checking internet connection...
+PING tx.fhir.org -4 -n 1 -w 1000 | FINDSTR TTL && GOTO isonline
+ECHO We're offline, nothing to do...
+GOTO end
+
+:isonline
+ECHO We're online
+
+
+:processflags
+SET ARG=%1
+IF DEFINED ARG (
+ IF "%ARG%"=="-f" SET FORCE=true
+ IF "%ARG%"=="--force" SET FORCE=true
+ SHIFT
+ GOTO processflags
+)
+
+FOR %%x IN ("%CD%") DO SET upper_path=%%~dpx
+
+ECHO.
+IF NOT EXIST "%input_cache_path%%publisher_jar%" (
+ IF NOT EXIST "%upper_path%%publisher_jar%" (
+ SET jarlocation="%input_cache_path%%publisher_jar%"
+ SET jarlocationname=Input Cache
+ ECHO IG Publisher is not yet in input-cache or parent folder.
+ REM we don't use jarlocation below because it will be empty because we're in a bracketed if statement
+ GOTO create
+ ) ELSE (
+ ECHO IG Publisher FOUND in parent folder
+ SET jarlocation="%upper_path%%publisher_jar%"
+ SET jarlocationname=Parent folder
+ GOTO upgrade
+ )
+) ELSE (
+ ECHO IG Publisher FOUND in input-cache
+ SET jarlocation="%input_cache_path%%publisher_jar%"
+ SET jarlocationname=Input Cache
+ GOTO upgrade
+)
+
+:create
+IF DEFINED FORCE (
+ MKDIR "%input_cache_path%" 2> NUL
+ GOTO download
+)
+
+IF "%skipPrompts%"=="y" (
+ SET create=Y
+) ELSE (
+ SET /p create="Ok? (Y/N) "
+)
+IF /I "%create%"=="Y" (
+ ECHO Will place publisher jar here: %input_cache_path%%publisher_jar%
+ MKDIR "%input_cache_path%" 2> NUL
+ GOTO download
+)
+GOTO done
+
+:upgrade
+IF "%skipPrompts%"=="y" (
+ SET overwrite=Y
+) ELSE (
+ SET /p overwrite="Overwrite %jarlocation%? (Y/N) "
+)
+
+IF /I "%overwrite%"=="Y" (
+ GOTO download
+)
+GOTO done
+
+:download
+ECHO Downloading most recent publisher to %jarlocationname% - it's ~100 MB, so this may take a bit
+
+FOR /f "tokens=4-5 delims=. " %%i IN ('ver') DO SET VERSION=%%i.%%j
+IF "%version%" == "10.0" GOTO win10
+IF "%version%" == "6.3" GOTO win8.1
+IF "%version%" == "6.2" GOTO win8
+IF "%version%" == "6.1" GOTO win7
+IF "%version%" == "6.0" GOTO vista
+
+ECHO Unrecognized version: %version%
+GOTO done
+
+:win10
+CALL POWERSHELL -command if ('System.Net.WebClient' -as [type]) {(new-object System.Net.WebClient).DownloadFile(\"%dlurl%\",\"%jarlocation%\") } else { Invoke-WebRequest -Uri "%dlurl%" -Outfile "%jarlocation%" }
+
+GOTO done
+
+:win7
+rem this may be triggering the antivirus - bitsadmin.exe is a known threat
+rem CALL bitsadmin /transfer GetPublisher /download /priority normal "%dlurl%" "%jarlocation%"
+
+rem this didn't work in win 10
+rem CALL Start-BitsTransfer /priority normal "%dlurl%" "%jarlocation%"
+
+rem this should work - untested
+call (New-Object Net.WebClient).DownloadFile('%dlurl%', '%jarlocation%')
+GOTO done
+
+:win8.1
+:win8
+:vista
+GOTO done
+
+
+
+:done
+
+
+
+
+ECHO.
+ECHO Updating scripts
+IF "%skipPrompts%"=="y" (
+ SET updateScripts=Y
+) ELSE (
+ SET /p updateScripts="Update scripts? (Y/N) "
+)
+IF /I "%updateScripts%"=="Y" (
+ GOTO scripts
+)
+GOTO end
+
+
+:scripts
+
+REM Download all batch files (and this one with a new name)
+
+SETLOCAL DisableDelayedExpansion
+
+
+
+:dl_script_1
+ECHO Updating _updatePublisher.sh
+call POWERSHELL -command if ('System.Net.WebClient' -as [type]) {(new-object System.Net.WebClient).DownloadFile(\"%update_sh_url%\",\"_updatePublisher.new.sh\") } else { Invoke-WebRequest -Uri "%update_sh_url%" -Outfile "_updatePublisher.new.sh" }
+if %ERRORLEVEL% == 0 goto upd_script_1
+echo "Errors encountered during download: %errorlevel%"
+goto dl_script_2
+:upd_script_1
+start copy /y "_updatePublisher.new.sh" "_updatePublisher.sh" ^&^& del "_updatePublisher.new.sh" ^&^& exit
+
+
+:dl_script_2
+ECHO Updating _genonce.bat
+call POWERSHELL -command if ('System.Net.WebClient' -as [type]) {(new-object System.Net.WebClient).DownloadFile(\"%gen_bat_url%\",\"_genonce.new.bat\") } else { Invoke-WebRequest -Uri "%gen_bat_url%" -Outfile "_genonce.bat" }
+if %ERRORLEVEL% == 0 goto upd_script_2
+echo "Errors encountered during download: %errorlevel%"
+goto dl_script_3
+:upd_script_2
+start copy /y "_genonce.new.bat" "_genonce.bat" ^&^& del "_genonce.new.bat" ^&^& exit
+
+:dl_script_3
+ECHO Updating _gencontinuous.bat
+call POWERSHELL -command if ('System.Net.WebClient' -as [type]) {(new-object System.Net.WebClient).DownloadFile(\"%gencont_bat_url%\",\"_gencontinuous.new.bat\") } else { Invoke-WebRequest -Uri "%gencont_bat_url%" -Outfile "_gencontinuous.bat" }
+if %ERRORLEVEL% == 0 goto upd_script_3
+echo "Errors encountered during download: %errorlevel%"
+goto dl_script_4
+:upd_script_3
+start copy /y "_gencontinuous.new.bat" "_gencontinuous.bat" ^&^& del "_gencontinuous.new.bat" ^&^& exit
+
+
+:dl_script_4
+ECHO Updating _genonce.sh
+call POWERSHELL -command if ('System.Net.WebClient' -as [type]) {(new-object System.Net.WebClient).DownloadFile(\"%gen_sh_url%\",\"_genonce.new.sh\") } else { Invoke-WebRequest -Uri "%gen_sh_url%" -Outfile "_genonce.sh" }
+if %ERRORLEVEL% == 0 goto upd_script_4
+echo "Errors encountered during download: %errorlevel%"
+goto dl_script_5
+:upd_script_4
+start copy /y "_genonce.new.sh" "_genonce.sh" ^&^& del "_genonce.new.sh" ^&^& exit
+
+:dl_script_5
+ECHO Updating _gencontinuous.sh
+call POWERSHELL -command if ('System.Net.WebClient' -as [type]) {(new-object System.Net.WebClient).DownloadFile(\"%gencont_sh_url%\",\"_gencontinuous.new.sh\") } else { Invoke-WebRequest -Uri "%gencont_sh_url%" -Outfile "_gencontinuous.sh" }
+if %ERRORLEVEL% == 0 goto upd_script_5
+echo "Errors encountered during download: %errorlevel%"
+goto dl_script_6
+:upd_script_5
+start copy /y "_gencontinuous.new.sh" "_gencontinuous.sh" ^&^& del "_gencontinuous.new.sh" ^&^& exit
+
+
+
+:dl_script_6
+ECHO Updating _updatePublisher.bat
+call POWERSHELL -command if ('System.Net.WebClient' -as [type]) {(new-object System.Net.WebClient).DownloadFile(\"%update_bat_url%\",\"_updatePublisher.new.bat\") } else { Invoke-WebRequest -Uri "%update_bat_url%" -Outfile "_updatePublisher.new.bat" }
+if %ERRORLEVEL% == 0 goto upd_script_6
+echo "Errors encountered during download: %errorlevel%"
+goto end
+:upd_script_6
+start copy /y "_updatePublisher.new.bat" "_updatePublisher.bat" ^&^& del "_updatePublisher.new.bat" ^&^& exit
+
+
+:end
+
+
+IF "%skipPrompts%"=="true" (
+ PAUSE
+)
diff --git a/_updatePublisher.sh b/_updatePublisher.sh
new file mode 100755
index 0000000..f127f66
--- /dev/null
+++ b/_updatePublisher.sh
@@ -0,0 +1,129 @@
+#!/bin/bash
+pubsource=https://github.com/HL7/fhir-ig-publisher/releases/latest/download/
+publisher_jar=publisher.jar
+dlurl=$pubsource$publisher_jar
+
+input_cache_path=$PWD/input-cache/
+
+scriptdlroot=https://raw.githubusercontent.com/HL7/ig-publisher-scripts/main
+update_bat_url=$scriptdlroot/_updatePublisher.bat
+gen_bat_url=$scriptdlroot/_genonce.bat
+gencont_bat_url=$scriptdlroot/_gencontinuous.bat
+gencont_sh_url=$scriptdlroot/_gencontinuous.sh
+gen_sh_url=$scriptdlroot/_genonce.sh
+update_sh_url=$scriptdlroot/_updatePublisher.sh
+
+skipPrompts=false
+FORCE=false
+
+if ! type "curl" > /dev/null; then
+ echo "ERROR: Script needs curl to download latest IG Publisher. Please install curl."
+ exit 1
+fi
+
+while [ "$#" -gt 0 ]; do
+ case $1 in
+ -f|--force) FORCE=true ;;
+ -y|--yes) skipPrompts=true ; FORCE=true ;;
+ *) echo "Unknown parameter passed: $1. Exiting"; exit 1 ;;
+ esac
+ shift
+done
+
+echo "Checking internet connection"
+curl -sSf tx.fhir.org > /dev/null
+
+if [ $? -ne 0 ] ; then
+ echo "Offline (or the terminology server is down), unable to update. Exiting"
+ exit 1
+fi
+
+if [ ! -d "$input_cache_path" ] ; then
+ if [ $FORCE != true ]; then
+ echo "$input_cache_path does not exist"
+ message="create it?"
+ read -r -p "$message" response
+ else
+ response=y
+ fi
+fi
+
+if [[ $response =~ ^[yY].*$ ]] ; then
+ mkdir ./input-cache
+fi
+
+publisher="$input_cache_path$publisher_jar"
+
+if test -f "$publisher" ; then
+ echo "IG Publisher FOUND in input-cache"
+ jarlocation="$publisher"
+ jarlocationname="Input Cache"
+ upgrade=true
+else
+ publisher="../$publisher_jar"
+ upgrade=true
+ if test -f "$publisher"; then
+ echo "IG Publisher FOUND in parent folder"
+ jarlocation="$publisher"
+ jarlocationname="Parent Folder"
+ upgrade=true
+ else
+ echo "IG Publisher NOT FOUND in input-cache or parent folder"
+ jarlocation=$input_cache_path$publisher_jar
+ jarlocationname="Input Cache"
+ upgrade=false
+ fi
+fi
+
+if [[ $skipPrompts == false ]]; then
+
+ if [[ $upgrade == true ]]; then
+ message="Overwrite $jarlocation? (Y/N) "
+ else
+ echo Will place publisher jar here: "$jarlocation"
+ message="Ok (enter 'y' or 'Y' to continue, any other key to cancel)?"
+ fi
+ read -r -p "$message" response
+else
+ response=y
+fi
+if [[ $skipPrompts == true ]] || [[ $response =~ ^[yY].*$ ]]; then
+
+ echo "Downloading most recent publisher to $jarlocationname - it's ~100 MB, so this may take a bit"
+ curl -L $dlurl -o "$jarlocation" --create-dirs
+else
+ echo cancelled publisher update
+fi
+
+if [[ $skipPrompts != true ]]; then
+ message="Update scripts? (enter 'y' or 'Y' to continue, any other key to cancel)?"
+ read -r -p "$message" response
+ fi
+
+if [[ $skipPrompts == true ]] || [[ $response =~ ^[yY].*$ ]]; then
+ echo "Downloading most recent scripts "
+
+ curl -L $update_bat_url -o /tmp/_updatePublisher.new
+ cp /tmp/_updatePublisher.new _updatePublisher.bat
+ rm /tmp/_updatePublisher.new
+
+ curl -L $gen_bat_url -o /tmp/_genonce.new
+ cp /tmp/_genonce.new _genonce.bat
+ rm /tmp/_genonce.new
+
+ curl -L $gencont_bat_url -o /tmp/_gencontinuous.new
+ cp /tmp/_gencontinuous.new _gencontinuous.bat
+ rm /tmp/_gencontinuous.new
+
+ curl -L $gencont_sh_url -o /tmp/_gencontinuous.new
+ cp /tmp/_gencontinuous.new _gencontinuous.sh
+ rm /tmp/_gencontinuous.new
+
+ curl -L $gen_sh_url -o /tmp/_genonce.new
+ cp /tmp/_genonce.new _genonce.sh
+ rm /tmp/_genonce.new
+
+ curl -L $update_sh_url -o /tmp/_updatePublisher.new
+ cp /tmp/_updatePublisher.new _updatePublisher.sh
+ rm /tmp/_updatePublisher.new
+fi
diff --git a/fsh-generated/ignore.txt b/fsh-generated/ignore.txt
new file mode 100644
index 0000000..e69de29
diff --git a/ig.ini b/ig.ini
new file mode 100644
index 0000000..8381cc6
--- /dev/null
+++ b/ig.ini
@@ -0,0 +1,3 @@
+[IG]
+ig = fsh-generated/resources/ImplementationGuide-fhir.example.json
+template = fhir.base.template#current
\ No newline at end of file
diff --git a/input/fsh/patient.fsh b/input/fsh/patient.fsh
new file mode 100644
index 0000000..ff0e7c6
--- /dev/null
+++ b/input/fsh/patient.fsh
@@ -0,0 +1,21 @@
+// This is a simple example of a FSH file.
+// This file can be renamed, and additional FSH files can be added.
+// SUSHI will look for definitions in any file using the .fsh ending.
+
+Invariant: pat-1
+Description: "Invalid Invariant"
+Severity: #error
+Expression: "name.exists()."
+
+Profile: MyPatient
+Parent: Patient
+Description: "An example profile of the Patient resource."
+* name 1..* MS
+* name obeys pat-1
+
+Instance: PatientExample
+InstanceOf: MyPatient
+Description: "An example of a patient with a license to krill."
+* name
+ * given[0] = "James"
+ * family = "Pond"
\ No newline at end of file
diff --git a/input/ignoreWarnings.txt b/input/ignoreWarnings.txt
new file mode 100644
index 0000000..d03142b
--- /dev/null
+++ b/input/ignoreWarnings.txt
@@ -0,0 +1,5 @@
+== Suppressed Messages ==
+
+# Add warning and/or information messages here after you've confirmed that they aren't really a problem
+# (And include comments like this justifying why)
+# See https://github.com/FHIR/sample-ig/blob/master/input/ignoreWarnings.txt for examples
\ No newline at end of file
diff --git a/input/pagecontent/index.md b/input/pagecontent/index.md
new file mode 100644
index 0000000..31f036f
--- /dev/null
+++ b/input/pagecontent/index.md
@@ -0,0 +1,3 @@
+# ExampleIG
+
+Feel free to modify this index page with your own awesome content!
\ No newline at end of file
diff --git a/sushi-config.yaml b/sushi-config.yaml
new file mode 100644
index 0000000..e44c70d
--- /dev/null
+++ b/sushi-config.yaml
@@ -0,0 +1,200 @@
+# ╭─────────────────────────Commonly Used ImplementationGuide Properties───────────────────────────╮
+# │ The properties below are used to create the ImplementationGuide resource. The most commonly │
+# │ used properties are included. For a list of all supported properties and their functions, │
+# │ see: https://fshschool.org/docs/sushi/configuration/. │
+# ╰────────────────────────────────────────────────────────────────────────────────────────────────╯
+id: fhir.example
+canonical: http://example.org
+name: ExampleIG
+# title: Example Title
+# description: Example Implementation Guide for getting started with SUSHI
+status: draft # draft | active | retired | unknown
+version: 0.1.0
+fhirVersion: 4.0.1 # https://www.hl7.org/fhir/valueset-FHIR-version.html
+copyrightYear: 2022+
+releaseLabel: ci-build # ci-build | draft | qa-preview | ballot | trial-use | release | update | normative+trial-use
+# license: CC0-1.0 # https://www.hl7.org/fhir/valueset-spdx-license.html
+jurisdiction: urn:iso:std:iso:3166#CA
+publisher:
+ name: Example Publisher
+ url: http://example.org/example-publisher
+ # email: test@example.org
+
+# The dependencies property corresponds to IG.dependsOn. The key is the
+# package id and the value is the version (or dev/current). For advanced
+# use cases, the value can be an object with keys for id, uri, and version.
+#
+# dependencies:
+# hl7.fhir.us.core: 3.1.0
+# hl7.fhir.us.mcode:
+# id: mcode
+# uri: http://hl7.org/fhir/us/mcode/ImplementationGuide/hl7.fhir.us.mcode
+# version: 1.0.0
+#
+#
+# The pages property corresponds to IG.definition.page. SUSHI can
+# auto-generate the page list, but if the author includes pages in
+# this file, it is assumed that the author will fully manage the
+# pages section and SUSHI will not generate any page entries.
+# The page file name is used as the key. If title is not provided,
+# then the title will be generated from the file name. If a
+# generation value is not provided, it will be inferred from the
+# file name extension. Any subproperties that are valid filenames
+# with supported extensions (e.g., .md/.xml) will be treated as
+# sub-pages.
+#
+# pages:
+# index.md:
+# title: Example Home
+# implementation.xml:
+# examples.xml:
+# title: Examples Overview
+# simpleExamples.xml:
+# complexExamples.xml:
+#
+#
+# The parameters property represents IG.definition.parameter. Rather
+# than a list of code/value pairs (as in the ImplementationGuide
+# resource), the code is the YAML key. If a parameter allows repeating
+# values, the value in the YAML should be a sequence/array. For a
+# partial list of allowed parameters see:
+# https://confluence.hl7.org/display/FHIR/Implementation+Guide+Parameters
+#
+# parameters:
+# excludettl: true
+# validation: [allow-any-extensions, no-broken-links]
+#
+# ╭────────────────────────────────────────────menu.xml────────────────────────────────────────────╮
+# │ The menu property will be used to generate the input/menu.xml file. The menu is represented │
+# │ as a simple structure where the YAML key is the menu item name and the value is the URL. │
+# │ The IG publisher currently only supports one level deep on sub-menus. To provide a │
+# │ custom menu.xml file, do not include this property and include a `menu.xml` file in │
+# │ input/includes. To use a provided input/includes/menu.xml file, delete the "menu" │
+# │ property below. │
+# ╰────────────────────────────────────────────────────────────────────────────────────────────────╯
+menu:
+ Home: index.html
+ Artifacts: artifacts.html
+
+# ╭───────────────────────────Less Common Implementation Guide Properties──────────────────────────╮
+# │ Uncomment the properties below to configure additional properties on the ImplementationGuide │
+# │ resource. These properties are less commonly needed than those above. │
+# ╰────────────────────────────────────────────────────────────────────────────────────────────────╯
+#
+# Those who need more control or want to add additional details to the contact values can use
+# contact directly and follow the format outlined in the ImplementationGuide resource and
+# ContactDetail.
+#
+# contact:
+# - name: Bob Smith
+# telecom:
+# - system: email # phone | fax | email | pager | url | sms | other
+# value: bobsmith@example.org
+# use: work
+#
+#
+# The global property corresponds to the IG.global property, but it
+# uses the type as the YAML key and the profile as its value. Since
+# FHIR does not explicitly disallow more than one profile per type,
+# neither do we; the value can be a single profile URL or an array
+# of profile URLs.
+#
+# global:
+# Patient: http://example.org/fhir/StructureDefinition/my-patient-profile
+# Encounter: http://example.org/fhir/StructureDefinition/my-encounter-profile
+#
+#
+# The resources property corresponds to IG.definition.resource.
+# SUSHI can auto-generate all of the resource entries based on
+# the FSH definitions and/or information in any user-provided
+# JSON or XML resource files. If the generated entries are not
+# sufficient or complete, however, the author can add entries
+# here. If the reference matches a generated entry, it will
+# replace the generated entry. If it doesn't match any generated
+# entries, it will be added to the generated entries. The format
+# follows IG.definition.resource with the following differences:
+# * use IG.definition.resource.reference.reference as the YAML key
+# * specify "omit" to omit a FSH-generated resource from the
+# resource list.
+# * groupingId can be used, but top-level groups syntax may be a
+# better option (see below).
+# The following are simple examples to demonstrate what this might
+# look like:
+#
+# resources:
+# Patient/my-example-patient:
+# name: My Example Patient
+# description: An example Patient
+# exampleBoolean: true
+# Patient/bad-example: omit
+#
+#
+# Groups can control certain aspects of the IG generation. The IG
+# documentation recommends that authors use the default groups that
+# are provided by the templating framework, but if authors want to
+# use their own instead, they can use the mechanism below. This will
+# create IG.definition.grouping entries and associate the individual
+# resource entries with the corresponding groupIds.
+#
+# groups:
+# GroupA:
+# name: Group A
+# description: The Alpha Group
+# resources:
+# - StructureDefinition/animal-patient
+# - StructureDefinition/arm-procedure
+# GroupB:
+# name: Group B
+# description: The Beta Group
+# resources:
+# - StructureDefinition/bark-control
+# - StructureDefinition/bee-sting
+#
+#
+# The ImplementationGuide resource defines several other properties
+# not represented above. These properties can be used as-is and
+# should follow the format defined in ImplementationGuide:
+# * date
+# * meta
+# * implicitRules
+# * language
+# * text
+# * contained
+# * extension
+# * modifierExtension
+# * experimental
+# * useContext
+# * copyright
+# * packageId
+#
+#
+# ╭──────────────────────────────────────────SUSHI flags───────────────────────────────────────────╮
+# │ The flags below configure aspects of how SUSHI processes FSH. │
+# ╰────────────────────────────────────────────────────────────────────────────────────────────────╯
+# The FSHOnly flag indicates if only FSH resources should be exported.
+# If set to true, no IG related content will be generated.
+# The default value for this property is false.
+#
+# FSHOnly: false
+#
+#
+# When set to true, the "short" and "definition" field on the root element of an Extension will
+# be set to the "Title" and "Description" of that Extension. Default is true.
+#
+# applyExtensionMetadataToRoot: true
+#
+#
+# The instanceOptions property is used to configure certain aspects of how SUSHI processes instances.
+# See the individual option definitions below for more detail.
+#
+# instanceOptions:
+# Determines for which types of Instances SUSHI will automatically set meta.profile
+# if InstanceOf references a profile:
+#
+# setMetaProfile: always # always | never | inline-only | standalone-only
+#
+#
+# Determines for which types of Instances SUSHI will automatically set id
+# if InstanceOf references a profile:
+#
+# setId: always # always | standalone-only