ProcessingPack is a set of classes and functions to execute HT-MEK image processing (feature finding and quantification).
It is designed around the following paradigm:
- Imaging of a ChipImage is single or series
- A given ChipImage is a 2-D array of Stamps
- A Stamp contains feature with attributes. Principle features are:
- Chamber: the primary reaction chamber
- Button: the contact area of the button on the slide
- Check package requirements: use
pipreqson directory containing runpack - Local install
- Download the repo and unzip
- Change directory to the download path
cd /repo-download_path - Pip install in virtual env with
pip install -e . - Register venv with Jupyter:
python -m ipykernel install --user --name=processingpack