Add tests

Author: Nalini Ganapati

test/scripts/test.sh

@@ -189,12 +189,9 @@ run_command "genomicsdb_query -w $WORKSPACE $INTERVAL_ARGS -o NON_EXISTENT_DIR/"
 touch $TEMP_DIR/just_a_file
 run_command "genomicsdb_query -w $WORKSPACE $INTERVAL_ARGS -o $TEMP_DIR/just_a_file/out" 1
 run_command "genomicsdb_query -w $WORKSPACE $INTERVAL_ARGS -o $TEMP_DIR/output_dir/" 1
-#mkdir $TEMP_DIR/output_dir
-#run_command "genomicsdb_query -w $WORKSPACE $INTERVAL_ARGS -o $TEMP_DIR/output_dir"
-#run_command "genomicsdb_query -w $WORKSPACE $INTERVAL_ARGS -o $TEMP_DIR/output_dir/"
-#pushd $TEMP_DIR
-#run_command "genomicsdb_query -w $WORKSPACE $INTERVAL_ARGS"
-#popd
+mkdir -p $TEMP_DIR/output_dir
+genomicsdb_query -w $WORKSPACE $INTERVAL_ARGS -o $TEMP_DIR/output_dir || exit 1
+genomicsdb_query -w $WORKSPACE $INTERVAL_ARGS -o $TEMP_DIR/output_dir/ || exit 1
 
 rm -f loader.json callset.json vidmap.json
 run_command "genomicsdb_cache -w $WORKSPACE $INTERVAL_ARGS"