HeteroGenesis/example.json at master · GeorgetteTanner/HeteroGenesis · GitHub

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{
"prefix":"test1",
"reference":"../HeteroGenesis/Homo_sapiens_assembly38.fasta",
"structure":"clone1,0.2,germline,clone2,0.8,clone1",
"directory":"./",
"dbsnp":"../HeteroGenesis/dbsnp.hg38.vcf",
"snvgermline":0.00001,
"indgermline":0.00001,
"aneuploid":2,
"wgdprob":0.0,
"snvsomatic":0.000001,
"indsomatic":0.000001,
"cnvrepgermline":10,
"cnvdelgermline":10,
"cnvrepsomatic":10,
"cnvdelsomatic":10,
"cnvgermlinemean":-5,
"cnvgermlinevariance":3,
"cnvgermlinemultiply":1000000,
"cnvsomaticmean":-1,
"cnvsomaticvariance":3,
"cnvsomaticmultiply":1000000,
"indmean":-2,
"indvariance":2,
"indmultiply":1,
"cnvcopiesmean":1,
"cnvcopiesvariance":0.5,
"dbsnpsnvproportion":0.9,
"dbsnpindelproportion":0.5,
"chromosomes":["chr21","chr22"]
}