This is an issue template made by the developers of ArchR. You MUST follow these instructions.
Questions related to how to use ArchR or requests for new features should be posted in the Discussions forum (https://github.com/GreenleafLab/ArchR/discussions).
Before you submit this Bug Report please update ArchR to the latest stable version and make sure that this issue has not already been fixed in the latest release. ArchR is still in active development and we will fix problems as they arise. To update ArchR:
devtools::install_github("GreenleafLab/ArchR", ref="master", repos = BiocManager::repositories())
If your issue persists, then please submit this bug report.
PLEASE FILL OUT THE RELEVANT INFORMATION AND DELETE THE UNUSED PORTIONS OF THIS ISSUE TEMPLATE.
Describe the bug
Hi,
Dear authors, I found that harmony can not remove my batch effect, so I want to use other algorithm such as BBKNN, scVI, how can i implement it?
This is an issue template made by the developers of ArchR. You MUST follow these instructions.
Questions related to how to use ArchR or requests for new features should be posted in the Discussions forum (https://github.com/GreenleafLab/ArchR/discussions).
Before you submit this Bug Report please update ArchR to the latest stable version and make sure that this issue has not already been fixed in the latest release. ArchR is still in active development and we will fix problems as they arise. To update ArchR:
devtools::install_github("GreenleafLab/ArchR", ref="master", repos = BiocManager::repositories())
If your issue persists, then please submit this bug report.
PLEASE FILL OUT THE RELEVANT INFORMATION AND DELETE THE UNUSED PORTIONS OF THIS ISSUE TEMPLATE.
Describe the bug
Hi,
Dear authors, I found that harmony can not remove my batch effect, so I want to use other algorithm such as BBKNN, scVI, how can i implement it?