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metadata-all.html
File metadata and controls
2963 lines (2217 loc) · 95.3 KB
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<!DOCTYPE html>
<html lang="en">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1">
<meta name="description" content="">
<meta name="author" content="">
<link rel="shortcut icon" href="//igv.org/web/img/favicon.ico">
<title>ImmuneRegulation</title>
<!-- Bootstrap CSS - NOT REQUIRED FOR IGV -->
<link rel="stylesheet" type="text/css" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css">
<!-- jQuery UI CSS -->
<link rel="stylesheet" type="text/css" href="//ajax.googleapis.com/ajax/libs/jqueryui/1.11.2/themes/smoothness/jquery-ui.css"/>
<!-- Font Awesome CSS -->
<link rel="stylesheet" type="text/css" href="https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css">
<link rel="shortcut icon" href="//igv.org/web/img/favicon.ico">
<!-- IGV CSS -->
<link rel="stylesheet" type="text/css" href="https://igv.org/web/beta/igv.css">
<!-- DataTables CSS -->
<link rel="stylesheet" type="text/css" href="//cdn.datatables.net/1.10.13/css/jquery.dataTables.css">
<link rel="stylesheet" type="text/css" src="./css/typeahead.css">
<!--link rel="stylesheet" type="text/css" src="./css/jquery.dataTables.min.css"-->
<!-- jQuery JS -->
<script type="text/javascript" src="https://ajax.googleapis.com/ajax/libs/jquery/2.0.3/jquery.min.js"></script>
<script type="text/javascript" src="https://ajax.googleapis.com/ajax/libs/jqueryui/1.11.2/jquery-ui.min.js"></script>
<!-- Bootstrap JS - NOT REQUIRED FOR IGV -->
<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js"></script>
<!-- IGV JS - Deneme DEV -->
<script src="./js/igv-immuneregulation.js"></script>
<!-- D3 JS -->
<script src='https://d3js.org/d3.v3.min.js'></script>
<script src="https://labratrevenge.com/d3-tip/javascripts/d3.tip.v0.6.3.js"></script>
<!-- Bootstrap Multi-Select -->
<script src="https://cdnjs.cloudflare.com/ajax/libs/bootstrap-multiselect/0.9.13/js/bootstrap-multiselect.min.js" integrity="sha256-1fK87Pt9T7XXn/Vj3CWSfJlZkL5f73092A8YL7p7avc=" crossorigin="anonymous"></script>
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/bootstrap-multiselect/0.9.13/css/bootstrap-multiselect.css" integrity="sha256-O1jJhOIWWDc3wq75g7aXDl7aEQT2XPkieX/Mz/u4hQ0=" crossorigin="anonymous"/>
<!-- DataTables JS -->
<script type="text/javascript" charset="utf8" src="//cdn.datatables.net/1.10.13/js/jquery.dataTables.js"></script>
<script src="./js/underscore-min.js"></script>
<script src="./js/type.js"></script>
<script src="./js/genenames.js"></script>
<!--script type="text/javascript" charset="utf8" src="./js/jquery.dataTables.min.js"></script-->
<style type="text/css">
#custom-search-input {
margin:0;
margin-top: 10px;
padding: 0;
}
#custom-search-input .search-query {
padding-right: 3px;
padding-right: 4px \9;
padding-left: 3px;
padding-left: 4px \9;
/* IE7-8 doesn't have border-radius, so don't indent the padding */
margin-bottom: 0;
-webkit-border-radius: 3px;
-moz-border-radius: 3px;
border-radius: 3px;
}
#custom-search-input button {
border: 0;
background: none;
/** belows styles are working good */
padding: 2px 5px;
margin-top: 2px;
position: relative;
left: -28px;
/* IE7-8 doesn't have border-radius, so don't indent the padding */
margin-bottom: 0;
-webkit-border-radius: 3px;
-moz-border-radius: 3px;
border-radius: 3px;
color:#D9230F;
}
.search-query:focus + button {
z-index: 3;
}
.graph-svg-component {
background-color: AliceBlue;
}
.filter {
display: inline-block;
}
#geneSearch {
background: #1974B8;
}
#geneSearch:hover {
background: #035b9c;
}
#geneSearch:active {
background: #1974B8;
}
.btn, .btn-primary {
background: white;
padding: 14px 24px;
font-weight: 400;
letter-spacing: 1px;
border-radius: 0;
border: 1 solid;
border-color: #bbb;
}
.btn-group, .btn-group-vertical {
margin-left: 10px;
}
.btn:focus, .btn:active:focus, .btn.active:focus {
outline: 0 none;
border: 2 solid;
border-color: #bbb;
}
.btn-primary.active, .btn-primary:focus, .btn-primary:active, .open > .dropdown-toggle.btn-primary {
background: lightgray;
color: #000;
box-shadow: none;
border: 1 solid;
border-color: #bbb;
}
.btn-primary:hover {
background: #bbb;
border: 1 solid;
border-color: #bbb;
}
.btn-primary:active, .btn-primary.raised.active {
background: lightgray;
box-shadow: none;
margin-bottom: -3px;
margin-top: 3px;
border: 1 solid;
border-color: #bbb;
}
.btn-primary.disabled, .btn-primary.disabled:focus, .btn-primary.disabled:active {
background: lightgray;
color: white;
opacity: .7;
border: 1 solid;
border-color: #bbb;
}
circle {
fill-opacity: .7;
fill: rgb(30,144,255);
stroke: #aaa;
}
circle:hover {
fill: red;
stroke: #ccc;
}
caption {
font-size:medium;
text-align: center;
color: blue;
}
table {
font-size: medium;
}
path.line {
fill: none;
stroke: #666;
stroke-width: 1.5px;
}
path.area {
fill: #e7e7e7;
}
.axis {
shape-rendering: crispEdges;
}
.x.axis line {
stroke: #fff;
}
.x.axis .minor {
stroke-opacity: .5;
}
.x.axis path {
display: none;
}
.y.axis line,
.y.axis path {
fill: none;
stroke: #000;
}
.axis--y text {
font: oblique 10px Georgia, serif;
}
div.tooltip {
position: absolute;
text-align: left;
width: 160px;
height: auto;
padding: 10px;
font: 12px sans-serif;
background: lightsteelblue;
border: 0px;
border-radius: 8px;
box-shadow: 4px 4px 10px rgba(0, 0, 0, 0.4);
pointer-events: none;
}
.navbar-nav:hover {
background: #77b7ec;
}
.navbar-nav>.open {
background: #1974B8;
}
.navbar-nav > li > a:active {
font-size: larger;
}
.navbar-nav > li > a:focus {
font-size: larger;
}
.navbar-inverse .navbar-nav>.open>a, .navbar-inverse .navbar-nav>.open>a:focus, .navbar-inverse .navbar-nav>.open>a:hover {
background: #77b7ec;
}
.chart div {
font: 10px sans-serif;
background-color: steelblue;
text-align: right;
padding: 3px;
margin: 1px;
color: white;
}
.bar {
fill: lightsteelblue;
stroke: gray;
}
.bar:hover {
fill: steelblue ;
stroke: red;
stroke-width: 1;
}
.indbar {
fill: bisque;
stroke: gray;
}
.indbar:hover {
fill: orange ;
stroke: red;
stroke-width: 1;
}
.d3-tip {
line-height: 1;
font-weight: bold;
padding: 8px;
background: rgba(255, 255, 255, 0.8);
border: 1px;
border-color: black;
color: black;
border-radius: 4px;
border: 1px solid #444;
/*border-radius: 2px;*/
}
/* Creates a small triangle extender for the tooltip */
.d3-tip:after {
box-sizing: border-box;
display: inline;
font-size: 10px;
width: 100%;
line-height: 1;
color: rgba(0, 0, 0, 0.8);
content: "\25BC";
position: absolute;
text-align: center;
}
/* Style northward tooltips differently */
.d3-tip.n:after {
margin: -1px 0 0 0;
top: 100%;
left: 0;
border: 1px;
border-color: grey;
}
</style>
<script type="text/javascript">
$(document).ready(function() {
$('#example').DataTable( {
"paging": false,
"ordering": false,
"info": false,
"filter": false
} );
} );
var datafile = "./data/meta-cis/meta-cis-Sep2020.txt";
var datasetsArr = [];
var cisMeta = [];
var gene_interest;
var ind_gene_interest;
d3.tsv("./data/meta-cis/datasets.txt", function(data) {
datasetsArr.push(data);
});
d3.tsv(datafile, function(data) {
vizMeta(data);
// Process Meta search if Gene passed by URL
var searchText = window.location.search;
var searchGene = searchText.split("=")[1];
if(searchText != "")
submitMetaURL(searchGene);
});
//TRANS
var Tdatafile = "./data/meta-trans/meta-trans-Sep2020.txt"; //meta-trans-Sep2020.txt
var TdatasetsArr = [];
var transMeta = [];
var TDData = [];
var TDFile = [];
var TDGene = "";
d3.tsv("./data/meta-trans/datasets.txt", function(data) {
TdatasetsArr.push(data);
});
d3.tsv(Tdatafile, function(data) {
TvizMeta(data);
// Process Meta search if Gene passed by URL
var searchText = window.location.search;
var searchGene = searchText.split("=")[1];
if(searchText != "")
submitMetaURL(searchGene);
});
// If GENE is passed by URL; run this
function submitMetaURL(URLgene)
{
var gene = URLgene;
var geneArray = gene.split(',');
if(geneArray[geneArray.length-1] == "")
geneArray.pop();
if(geneArray.length == 0)
{
var extraGeneDiv = document.getElementById("extraGene");
extraGeneDiv.style.visibility = "visible";
return true;
}
else
{
var extraGeneDiv = document.getElementById("extraGene");
extraGeneDiv.style.visibility = "hidden";
var allGraphics = document.getElementById("allGraphics");
allGraphics.style.visibility = "visible";
}
var searchData = [];
for(var i = 0; i < geneArray.length; i++)
{
var genelookup = _.filter(cisMeta, function(d) {return d.g == geneArray[i]});
if(genelookup != undefined)
searchData.push(genelookup);
}
var viz = d3.select('#chart4');
d3.select("#chart4-svg").remove();
var viz = d3.select('#chart5');
d3.select("#chart5-svg").remove();
var viz = d3.select('#chart6');
d3.select("#chart6-svg").remove();
createGeneGraphics(searchData);
//createSnpGraphics(searchData);
createCellGraphics(searchData);
// Generate TRANS Graphs...
TsubmitMetaURL(gene);
document.getElementById("geneVal").value = gene;
}
// If GENE is passed by URL; run this
function TsubmitMetaURL(URLgene)
{
var gene = URLgene;
var geneArray = gene.split(',');
if(geneArray[geneArray.length-1] == "")
geneArray.pop();
if(geneArray.length == 0)
{
var extraGeneDiv = document.getElementById("extraGene");
extraGeneDiv.style.visibility = "visible";
return true;
}
else
{
var extraGeneDiv = document.getElementById("extraGene");
extraGeneDiv.style.visibility = "hidden";
var allGraphics = document.getElementById("allGraphics");
allGraphics.style.visibility = "visible";
}
var searchData = [];
for(var i = 0; i < geneArray.length; i++)
{
var genelookup = _.filter(transMeta, function(d) {return d.Gene == geneArray[i]});
//console.log('AAAA:', genelookup);
if(genelookup != undefined)
searchData.push(genelookup);
}
var viz = d3.select('#Tchart4');
d3.select("#Tchart4-svg").remove();
var viz = d3.select('#Tchart5');
d3.select("#Tchart5-svg").remove();
var viz = d3.select('#Tchart6');
d3.select("#Tchart6-svg").remove();
var textarea = document.getElementById("Tchart7-text");
textarea.style.visibility = "hidden";
var textarea = document.getElementById("Tchart9-text");
textarea.style.visibility = "hidden";
TcreateGeneGraphics(searchData);
// TcreateSnpGraphics(searchData);
TcreateCellGraphics(searchData);
}
function submitMeta()
{
var gene = document.getElementById("geneVal").value;
var lastChar = gene.substr(gene.length - 1);
if(lastChar == ',')
gene = gene.substring(0, gene.length - 1);
var geneArray = gene.split(',');
if(geneArray[geneArray.length-1] == "")
geneArray.pop();
if(geneArray.length == 0)
{
var extraGeneDiv = document.getElementById("extraGene");
extraGeneDiv.style.visibility = "visible";
return true;
}
else
{
var extraGeneDiv = document.getElementById("extraGene");
extraGeneDiv.style.visibility = "hidden";
var allGraphics = document.getElementById("allGraphics");
allGraphics.style.visibility = "visible";
}
var searchData = [];
for(var i = 0; i < geneArray.length; i++)
{
var genelookup = _.filter(cisMeta, function(d) {return d.g == geneArray[i]});
//console.log('BBBB:', genelookup);
if(genelookup != undefined)
searchData.push(genelookup);
}
//console.log('BBBB:', searchData);
var viz = d3.select('#chart4');
d3.select("#chart4-svg").remove();
var viz = d3.select('#chart5');
d3.select("#chart5-svg").remove();
var viz = d3.select('#chart6');
d3.select("#chart6-svg").remove();
/*var textarea = document.getElementById("chart7-text");
textarea.style.visibility = "hidden";
var textarea = document.getElementById("chart9-text");
textarea.style.visibility = "hidden";*/
createGeneGraphics(searchData);
//createSnpGraphics(searchData);
createCellGraphics(searchData);
document.getElementById("Tchart70-text").style.visibility = "hidden";
document.getElementById("Tchart90-text").style.visibility = "hidden";
// Generate TRANS Graphs...
TsubmitMeta();
}
function vizMeta(data)
{
// Convert Data to Array:::
cisMeta = _.toArray(data);
//console.log('ccc:', cisMeta);
}
function createGeneGraphics(searchData)
{
var margin = {top: 10, right: 20, bottom: 30, left: 40},
width = 700 - margin.left - margin.right,
height = 450 - margin.top - margin.bottom;
var x = d3.scale.ordinal()
.rangeRoundBands([0, width], .1);
var y = d3.scale.linear()
.range([height, 0]);
var xAxis = d3.svg.axis()
.scale(x)
.orient("bottom");
var yAxis = d3.svg.axis()
.scale(y)
.orient("left")
.tickFormat(d3.format("d"));
var tip = d3.tip()
.attr('class', 'd3-tip')
.offset([-10, 0])
.html(function(d) {
return "<strong>"+d[0].g+":</strong> <span style='color:red'>" + getsnpcount(d) + "</span>";
});
var viz = d3.select('#chart1');
d3.select("#chart1-svg").remove();
var svg = viz.append('svg')
.attr("id", "chart1-svg")
.attr("width", width + margin.left + margin.right)
.attr("height", height + margin.top + margin.bottom)
.append("g")
.attr("transform", "translate(" + margin.left + "," + margin.top + ")");
var data = [];
var sorteddata = [];
// sort transMeta based on snp count
sorteddata = _.sortBy(searchData, function(dd) { return getsnpcount(dd); });
// push the most populous 10 entries to work array
for(var i = 1; i < searchData.length+1; i++)
if(sorteddata[sorteddata.length - i].length > 0)
data.push(sorteddata[sorteddata.length - i]);
svg.call(tip);
//Generate graph...
var yval = d3.scale.linear()
.domain([0, d3.max(data, function(dd) { return getsnpcount(dd); })])
.range([height, 0]);
var xval = d3.scale.ordinal()
.domain(data.map(function(d) { return d[0].g; }))
.range([width/searchData.length]);
x.domain(data.map(function(d) { return d[0].g; }));
y.domain([0, d3.max(data, function(dd) { return getsnpcount(dd); })]);
svg.append("g")
.attr("class", "x axis")
.attr("transform", "translate(0," + height + ")")
.style("font-size", "x-small")
.call(xAxis);
svg.append("g")
.attr("class", "y axis")
.call(yAxis);
svg.selectAll(".bar")
.data(data)
.enter().append("rect")
.attr("class", "bar")
.attr("x", function(d) { return x(d[0].g); })
.attr("width", width/(data.length+0.5))
.attr("y", function(d) {
if ( (height - yval(getsnpcount(d))) < 2)
return (height - 2);
else
return yval(getsnpcount(d));
})
.attr("height", function(d) {
if ( (height - yval(getsnpcount(d))) < 2)
return 2;
else
return height - yval(getsnpcount(d));
})
//.attr("y", function(d) { return yval(getsnpcount(d)); })
//.attr("height", function(d) { return height - yval(getsnpcount(d)); })
.on('mouseover', tip.show) //function() { d3.select(this).style('fill', 'steelblue'); tip.show; })
//.on('mouseover', function() { d3.select(this).style('fill', 'steelblue'); tip.show; })
//.on('mouseout', function(d) { d3.select(this).style('fill', 'lightsteelblue'); tip.hide; })
.on('mouseout', tip.hide)//function(d) { if( gene_interest != x(d[0].g) )d3.select(this).style('fill', 'lightsteelblue'); tip.hide; })
.on("click", function(d){
//var textarea = document.getElementById("chart7-text");
//textarea.style.visibility = "hidden";
/* gene_interest = x(d[0].g);
d3.selectAll(".bar").style('fill', 'lightsteelblue');
d3.select(this).style('fill', 'steelblue'); */
indGeneGraphics(data, d);
//Change color
d3.select("#chart1-svg").selectAll(".bar").style('fill', 'lightsteelblue');
d3.select(this).style('fill', 'steelblue');
});
}
function indGeneGraphics(data, indGene)
{
var margin = {top: 40, right: 200, bottom: 30, left: 10},
width = 650 - margin.left - margin.right,
height = 450 - margin.top - margin.bottom;
var y = d3.scale.ordinal()
.rangeRoundBands([0, height], .1);
var x = d3.scale.linear()
.range([0, width]);
var xAxis = d3.svg.axis()
.scale(x)
.orient("top")
.tickFormat(d3.format("d"));
var yAxis = d3.svg.axis()
.scale(y)
.orient("left");
var tip = d3.tip()
.attr('class', 'd3-tip')
.offset([-10, 0])
.html(function(d) {
for(var i = 0; i < datasetsArr[0].length; i++)
{
var subtype = "";
if(datasetsArr[0][i].subtype != '-')
subtype = datasetsArr[0][i].subtype + "<br/>";
if(datasetsArr[0][i].id == d.f)
return datasetsArr[0][i].cell + "<br/>" + subtype + datasetsArr[0][i].ethnicity + " cohort <br/>" + datasetsArr[0][i].subjects + " subjects" + "<br/> <span style='color:red'>" + parseInt(d.s) + " cis-eQTLs</span>";
}
//return "<strong>"+d.f+":</strong> <br/> <span style='color:red'>" + d.s.length + "</span>";
});
var viz = d3.select('#chart4');
d3.select("#chart4-svg").remove();
var svg = viz.append('svg')
.attr("id", "chart4-svg")
.attr("width", width + margin.left + margin.right)
.attr("height", height + margin.top + margin.bottom)
.append("g")
.attr("transform", "translate(" + margin.left + "," + margin.top + ")");
var initdata = [];
var data = [];
var sorteddata = [];
for(var i = 0; i < indGene.length; i++)
initdata.push(indGene[i]);
// sort transMeta based on snp count
sorteddata = _.sortBy(initdata, function(dd) { return parseInt(dd.s); });
// push the most populous 10 entries to work array
for(var i = 1; i < initdata.length+1; i++)
data.push(sorteddata[sorteddata.length - i]);
//console.log('Data...', data);
var barheight = (height / data.length) - (20 / data.length);
if(data.length == 1)
barheight -= 20;
svg.call(tip);
//Generate graph...
var yval = d3.scale.linear()
.domain([0, d3.max(data, function(dd) { return parseInt(dd.s); })])
.range([height, 0]);
var xval = d3.scale.linear()
.domain([0, d3.max(data, function(dd) { return parseInt(dd.s); })])
.range([width, 0]);
y.domain(data.map(function(dd) { return dd.f; }));
x.domain([0, d3.max(data, function(dd) { return parseInt(dd.s); })]);
svg.append("g")
.attr("class", "x axis")
.attr("transform", "translate(0," + 8 + ")")
.style("font-size", "small")
.call(xAxis);
svg.append("g")
.attr("class", "y axis")
.style("font-size", "0px")
.call(yAxis);
svg.selectAll(".bar")
.data(data)
.enter()
.append("g")
.attr("class", "chart4-g")
.append("rect")
.attr("class", "indbar")
.attr("y", function(dd) { return y(dd.f); })
.attr("height", barheight)
.attr("x", function(dd) { return 0; })
.attr("width", function(dd) {
if( (width - xval(parseInt(dd.s))) < 2)
return 2;
else
return width - xval(parseInt(dd.s));
})
//.attr("width", function(dd) { return width - xval(parseInt(dd.s)); })
.on('mouseover', tip.show)
.on('mouseout', tip.hide)
.on("click", function(d) {
//indGeneGraphicsDetails(data, d.f);
//Change color
//d3.select("#chart4-svg").selectAll(".indbar").style('fill', 'bisque');
//d3.select(this).style('fill', 'orange');
});
d3.selectAll(".chart4-g")
.data(data)
.append("text")
.attr("x", function(dd) { return width - xval(parseInt(dd.s)) + 5; })
.attr("y", function(dd) { return y(dd.f) + barheight / 2; })
.attr("dy", ".35em")
.text(function(dd) {
for(var i = 0; i < datasetsArr[0].length; i++)
{
var subtype = "";
if(datasetsArr[0][i].subtype != '-')
subtype = " (" + datasetsArr[0][i].subtype + ")";
if(datasetsArr[0][i].id == dd.f)
return datasetsArr[0][i].cell + subtype + ", " + datasetsArr[0][i].ethnicity;
}
});
d3.selectAll(".chart4-g")
.data(data)
.append("text")
.attr("x", function(dd) { return width + 160; })
.attr("y", function(dd) { return y(dd.f) + barheight / 2; })
.attr("dy", ".35em")
.attr("fill", "blue")
.html(function(dd, i) {
var link = "'index.html?s=1&g=";
var urlgene = indGene[0].g;
var urldataset = dd.f.split("-")[1];
link = link + urlgene + "&d=" + urldataset + "'";
var fullLink = "<a href=" + link + "target='_blank' style='fill:blue'>Details</a>";
return fullLink;
});
svg.append("text")
.attr("x", (width / 2))
.attr("y", 0 - (margin.top / 2))
.attr("text-anchor", "middle")
.style("font-size", "18px")
.style("text-decoration", "underline")
.text(function(dd) { return "Gene: " + indGene[0].g + " - Cis-eQTL Datasets"; });
}
function createCellGraphics(searchData)
{
var margin = {top: 10, right: 20, bottom: 30, left: 40},
width = 700 - margin.left - margin.right,
height = 450 - margin.top - margin.bottom;
var x = d3.scale.ordinal()
.rangeRoundBands([0, width], .1);
var y = d3.scale.linear()
.range([height, 0]);
var xAxis = d3.svg.axis()
.scale(x)
.orient("bottom");
var yAxis = d3.svg.axis()
.scale(y)
.orient("left")
.tickFormat(d3.format("d"));
var tip = d3.tip()
.attr('class', 'd3-tip')
.offset([-10, 0])
.html(function(d) {
return "<strong>"+d.cell+":</strong> <span style='color:red'>" + d.freq + "</span>";
});
var viz = d3.select('#chart3');
d3.select("#chart3-svg").remove();
var svg = viz.append('svg')
.attr("id", "chart3-svg")
.attr("width", width + margin.left + margin.right)
.attr("height", height + margin.top + margin.bottom)
.append("g")
.attr("transform", "translate(" + margin.left + "," + margin.top + ")");
var data = [];
var sorteddata = [];
var cellfreq = [];
// sort transMeta based on snp count
sorteddata = _.sortBy(searchData, function(dd) { return getsnpcount(dd); });
// push the most populous 10 entries to work array
for(var i = 1; i < searchData.length+1; i++)
if(sorteddata[sorteddata.length - i].length > 0)
data.push(sorteddata[sorteddata.length - i]);
cellfreq = getcellfreq(data);
console.log('Data:', data);
console.log('Cell Freq:', cellfreq);
svg.call(tip);
//Generate graph...
var yval = d3.scale.linear()
.domain([0, d3.max(cellfreq, function(d) { return d.freq; })])
.range([height, 0]);
var xval = d3.scale.ordinal()
.domain(cellfreq.map(function(d) { return d.cell; }))
.range([width/cellfreq.length]);
x.domain(cellfreq.map(function(d) { return d.cell; }));
y.domain([0, d3.max(cellfreq, function(d) { return d.freq; })]);
svg.append("g")
.attr("class", "x axis")
.attr("transform", "translate(0," + height + ")")
.style("font-size", "x-small")
.call(xAxis)
.selectAll('.x .tick text')
.call(function(t){
t.each(function(d){ // for each one
var self = d3.select(this);
var s = self.text().split(' '); // get the text and split it
self.text(''); // clear it out
self.append("tspan") // insert two tspans
.attr("x", 0)
.attr("dy",".8em")
.text(s[0]);
self.append("tspan")
.attr("x", 0)
.attr("dy",".8em")
.text(s[1]);
})
});
svg.append("g")
.attr("class", "y axis")
.call(yAxis);
svg.selectAll(".bar")
.data(cellfreq)
.enter().append("rect")
.attr("class", "bar")
.attr("x", function(d) { return x(d.cell); })
.attr("width", width/(cellfreq.length + 0.5) )
.attr("y", function(d) {
if ( (height - yval(d.freq)) < 2)