I think some links were overlooked when the download URL for the example dataset was updated:
|
"In this tutorial, we provide guidelines about how to prepare aligned LRTS read files (.bam) and the reference genome and annotation data. **Subsequent tutorials on IsoTools workflow do not depend on executing these steps**. We have compiled a small pre-processed demonstration data set, based on a subset of the genome ([download link](https://nc.molgen.mpg.de/cloud/index.php/s/zYe7g6qnyxGDxRd)). Below, we document how this example data set was produced. \n", |
|
"This tutorial assumes you have run the tutorial on [transcriptome reconstruction](03_transcriptome_reconstruction.html) already, and prepared the transcriptome pkl file \"PacBio_isotools.pkl\" based on the [demonstration data set](https://nc.molgen.mpg.de/cloud/index.php/s/zYe7g6qnyxGDxRd). Since domains depend on ORF predictions, make sure you ran the [add_orf_prediction()](../isotoolsAPI.html?highlight=add_orf_prediction#isotools.Transcriptome.add_orf_prediction) function during transcriptome reconstruction. " |
I think some links were overlooked when the download URL for the example dataset was updated:
IsoTools2/docs/notebooks/01_prepare_data.ipynb
Line 15 in 423764b
IsoTools2/docs/notebooks/10_domains.ipynb
Line 18 in 423764b