From 3169d756215300bbdefc87f9a1402ba7c086868a Mon Sep 17 00:00:00 2001 From: Tim Holy Date: Sat, 2 May 2026 20:22:32 -0500 Subject: [PATCH 1/5] New version: NeighborhoodClustering v0.2.4 UUID: d32f3a2f-26fa-5ce0-a2ac-000c59351c13 Repo: Tree: 864d50def09c445afa3c767f0fe4bb90856dc36f --- N/NeighborhoodClustering/Versions.toml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/N/NeighborhoodClustering/Versions.toml b/N/NeighborhoodClustering/Versions.toml index eb41044..9959194 100644 --- a/N/NeighborhoodClustering/Versions.toml +++ b/N/NeighborhoodClustering/Versions.toml @@ -12,3 +12,6 @@ git-tree-sha1 = "23619d2d80ed9bdfce054ff0e6bcf104afc57ee8" ["0.2.3"] git-tree-sha1 = "10eba4e1c69f7903d46223216cd2edb3853d3efc" + +["0.2.4"] +git-tree-sha1 = "864d50def09c445afa3c767f0fe4bb90856dc36f" From 2b1ea26d5290947d6c6312aa982747f0be9ac363 Mon Sep 17 00:00:00 2001 From: Tim Holy Date: Sat, 2 May 2026 22:35:22 -0500 Subject: [PATCH 2/5] New version: NeighborhoodClustering v0.2.5 UUID: d32f3a2f-26fa-5ce0-a2ac-000c59351c13 Repo: Tree: b61220db5bdd69bcecb1b07e27a300c8a56ce4a3 --- N/NeighborhoodClustering/Compat.toml | 3 +++ N/NeighborhoodClustering/Deps.toml | 3 +++ N/NeighborhoodClustering/Versions.toml | 3 +++ 3 files changed, 9 insertions(+) diff --git a/N/NeighborhoodClustering/Compat.toml b/N/NeighborhoodClustering/Compat.toml index 901f251..feaf718 100644 --- a/N/NeighborhoodClustering/Compat.toml +++ b/N/NeighborhoodClustering/Compat.toml @@ -22,3 +22,6 @@ Statistics = "1" ["0.2.3-0"] DataStructures = "0.18-0.19" julia = "1.10.0-1" + +["0.2.5-0"] +LinearAlgebra = "1" diff --git a/N/NeighborhoodClustering/Deps.toml b/N/NeighborhoodClustering/Deps.toml index 01f846d..5f6bc29 100644 --- a/N/NeighborhoodClustering/Deps.toml +++ b/N/NeighborhoodClustering/Deps.toml @@ -5,3 +5,6 @@ Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" ProgressMeter = "92933f4c-e287-5a05-a399-4b506db050ca" Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + +["0.2.5-0"] +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" diff --git a/N/NeighborhoodClustering/Versions.toml b/N/NeighborhoodClustering/Versions.toml index 9959194..e63afdb 100644 --- a/N/NeighborhoodClustering/Versions.toml +++ b/N/NeighborhoodClustering/Versions.toml @@ -15,3 +15,6 @@ git-tree-sha1 = "10eba4e1c69f7903d46223216cd2edb3853d3efc" ["0.2.4"] git-tree-sha1 = "864d50def09c445afa3c767f0fe4bb90856dc36f" + +["0.2.5"] +git-tree-sha1 = "b61220db5bdd69bcecb1b07e27a300c8a56ce4a3" From a3da8aa07a98f989e6bb28337507fbf782fd2ebc Mon Sep 17 00:00:00 2001 From: Tim Holy Date: Tue, 5 May 2026 20:32:41 -0500 Subject: [PATCH 3/5] New package: PointServers v0.1.0 UUID: 971ec62b-5a8f-4025-ae2c-95144b3fab64 Repo: git@github.com:HolyLab/NeighborhoodClustering.jl.git Tree: fbb114703b7147575e3a1704eeecaab6de0232c6 --- P/PointServers/Compat.toml | 5 +++++ P/PointServers/Deps.toml | 4 ++++ P/PointServers/Package.toml | 4 ++++ P/PointServers/Versions.toml | 2 ++ Registry.toml | 1 + 5 files changed, 16 insertions(+) create mode 100644 P/PointServers/Compat.toml create mode 100644 P/PointServers/Deps.toml create mode 100644 P/PointServers/Package.toml create mode 100644 P/PointServers/Versions.toml diff --git a/P/PointServers/Compat.toml b/P/PointServers/Compat.toml new file mode 100644 index 0000000..8075b49 --- /dev/null +++ b/P/PointServers/Compat.toml @@ -0,0 +1,5 @@ +[0] +DataStructures = "0.18-0.19" +Distances = "0.10" +Random = "1" +julia = "1.10.0-1" diff --git a/P/PointServers/Deps.toml b/P/PointServers/Deps.toml new file mode 100644 index 0000000..43d9d2b --- /dev/null +++ b/P/PointServers/Deps.toml @@ -0,0 +1,4 @@ +[0] +DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" +Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" diff --git a/P/PointServers/Package.toml b/P/PointServers/Package.toml new file mode 100644 index 0000000..df17475 --- /dev/null +++ b/P/PointServers/Package.toml @@ -0,0 +1,4 @@ +name = "PointServers" +uuid = "971ec62b-5a8f-4025-ae2c-95144b3fab64" +repo = "git@github.com:HolyLab/NeighborhoodClustering.jl.git" +subdir = "PointServers" diff --git a/P/PointServers/Versions.toml b/P/PointServers/Versions.toml new file mode 100644 index 0000000..93d7bfc --- /dev/null +++ b/P/PointServers/Versions.toml @@ -0,0 +1,2 @@ +["0.1.0"] +git-tree-sha1 = "fbb114703b7147575e3a1704eeecaab6de0232c6" diff --git a/Registry.toml b/Registry.toml index 5eab989..8c630f2 100644 --- a/Registry.toml +++ b/Registry.toml @@ -50,6 +50,7 @@ register any package within lab scope. 935ac36e-2656-11e9-1e3b-cbaa636797af = { name = "RegisterDriver", path = "R/RegisterDriver" } 96ae54c0-0dff-11e9-11b2-27e67f6cc5ea = { name = "UnitAliases", path = "U/UnitAliases" } 96be3cfc-dfc9-41f0-9424-fd41ed36fd5e = { name = "BlockRegistration", path = "B/BlockRegistration" } +971ec62b-5a8f-4025-ae2c-95144b3fab64 = { name = "PointServers", path = "P/PointServers" } 97563a55-ea3b-5e9e-8052-20bacb65643b = { name = "LightsheetDestripe", path = "L/LightsheetDestripe" } 978d31ce-2656-11e9-22d6-b5c46a1a3d3e = { name = "RegisterWorkerShell", path = "R/RegisterWorkerShell" } 99b0285a-20f0-11e9-0283-7f418f478feb = { name = "FastScanning", path = "F/FastScanning" } From e12a5664d263b7d65b2d8aaff6289ddbe0d28fa8 Mon Sep 17 00:00:00 2001 From: Tim Holy Date: Tue, 5 May 2026 20:33:35 -0500 Subject: [PATCH 4/5] New package: CriticalNeighborhood v0.1.0 UUID: 3c818559-954a-4ec8-ad7b-b8bb044d1093 Repo: git@github.com:HolyLab/NeighborhoodClustering.jl.git Tree: 328b3f5bab662a9d9ae9efe141a0592405848242 --- C/CriticalNeighborhood/Compat.toml | 6 ++++++ C/CriticalNeighborhood/Deps.toml | 5 +++++ C/CriticalNeighborhood/Package.toml | 4 ++++ C/CriticalNeighborhood/Versions.toml | 2 ++ Registry.toml | 1 + 5 files changed, 18 insertions(+) create mode 100644 C/CriticalNeighborhood/Compat.toml create mode 100644 C/CriticalNeighborhood/Deps.toml create mode 100644 C/CriticalNeighborhood/Package.toml create mode 100644 C/CriticalNeighborhood/Versions.toml diff --git a/C/CriticalNeighborhood/Compat.toml b/C/CriticalNeighborhood/Compat.toml new file mode 100644 index 0000000..a2dae0c --- /dev/null +++ b/C/CriticalNeighborhood/Compat.toml @@ -0,0 +1,6 @@ +[0] +Distributions = "0.25" +LinearAlgebra = "1" +PointServers = "0.1" +Statistics = "1" +julia = "1.8.0-1" diff --git a/C/CriticalNeighborhood/Deps.toml b/C/CriticalNeighborhood/Deps.toml new file mode 100644 index 0000000..97ef40d --- /dev/null +++ b/C/CriticalNeighborhood/Deps.toml @@ -0,0 +1,5 @@ +[0] +Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" +LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +PointServers = "971ec62b-5a8f-4025-ae2c-95144b3fab64" +Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" diff --git a/C/CriticalNeighborhood/Package.toml b/C/CriticalNeighborhood/Package.toml new file mode 100644 index 0000000..435b970 --- /dev/null +++ b/C/CriticalNeighborhood/Package.toml @@ -0,0 +1,4 @@ +name = "CriticalNeighborhood" +uuid = "3c818559-954a-4ec8-ad7b-b8bb044d1093" +repo = "git@github.com:HolyLab/NeighborhoodClustering.jl.git" +subdir = "CriticalNeighborhood" diff --git a/C/CriticalNeighborhood/Versions.toml b/C/CriticalNeighborhood/Versions.toml new file mode 100644 index 0000000..a6b97c4 --- /dev/null +++ b/C/CriticalNeighborhood/Versions.toml @@ -0,0 +1,2 @@ +["0.1.0"] +git-tree-sha1 = "328b3f5bab662a9d9ae9efe141a0592405848242" diff --git a/Registry.toml b/Registry.toml index 8c630f2..18fb49f 100644 --- a/Registry.toml +++ b/Registry.toml @@ -31,6 +31,7 @@ register any package within lab scope. 395f9d9a-971b-4d1d-8fea-4857c99358f6 = { name = "TaylorRemainders", path = "T/TaylorRemainders" } 3bd9afcd-55df-531a-9b34-dc642dce7b95 = { name = "RFFT", path = "R/RFFT" } 3c0dd727-6833-5f5d-a1e8-c0d421935c74 = { name = "RegisterMismatch", path = "R/RegisterMismatch" } +3c818559-954a-4ec8-ad7b-b8bb044d1093 = { name = "CriticalNeighborhood", path = "C/CriticalNeighborhood" } 43b7f2cc-1a9d-11e9-093e-178b9f97357d = { name = "ImagineProcedures", path = "I/ImagineProcedures" } 45426be3-ce3a-4f7b-a429-3e2aa7698a5f = { name = "PhaseOptimizedComponentAnalysis", path = "P/PhaseOptimizedComponentAnalysis" } 454fbcff-fa78-4492-9c80-2cfc3f2a4b52 = { name = "CounterMarking", path = "C/CounterMarking" } From bec9302b711cfc9437c8ad9bda17712ae199428f Mon Sep 17 00:00:00 2001 From: Tim Holy Date: Tue, 5 May 2026 20:34:23 -0500 Subject: [PATCH 5/5] New version: NeighborhoodClustering v0.3.0 UUID: d32f3a2f-26fa-5ce0-a2ac-000c59351c13 Repo: Tree: 20e2ab789349f5dd68bc61e37169993a00ec53db --- N/NeighborhoodClustering/Compat.toml | 16 ++++++++++++---- N/NeighborhoodClustering/Deps.toml | 11 +++++++++-- N/NeighborhoodClustering/Package.toml | 1 + N/NeighborhoodClustering/Versions.toml | 3 +++ 4 files changed, 25 insertions(+), 6 deletions(-) diff --git a/N/NeighborhoodClustering/Compat.toml b/N/NeighborhoodClustering/Compat.toml index feaf718..3e131d3 100644 --- a/N/NeighborhoodClustering/Compat.toml +++ b/N/NeighborhoodClustering/Compat.toml @@ -1,9 +1,11 @@ ["0-0.1"] julia = "0.7-1" -["0.2-0"] +["0.2"] Distances = "0.10" Distributions = "0.25" + +["0.2-0"] ProgressMeter = "1" ["0.2-0.2.1"] @@ -15,13 +17,19 @@ DataStructures = "0.18" ["0.2.2"] julia = "1.9.0-1" -["0.2.2-0"] +["0.2.2-0.2"] Random = "1" Statistics = "1" -["0.2.3-0"] +["0.2.3-0.2"] DataStructures = "0.18-0.19" julia = "1.10.0-1" -["0.2.5-0"] +["0.2.5-0.2"] LinearAlgebra = "1" + +["0.3-0"] +CriticalNeighborhood = "0.1" +Graphs = "1" +PointServers = "0.1" +julia = "1.12.0-1" diff --git a/N/NeighborhoodClustering/Deps.toml b/N/NeighborhoodClustering/Deps.toml index 5f6bc29..c133019 100644 --- a/N/NeighborhoodClustering/Deps.toml +++ b/N/NeighborhoodClustering/Deps.toml @@ -1,10 +1,17 @@ [0] +ProgressMeter = "92933f4c-e287-5a05-a399-4b506db050ca" + +["0-0.2"] DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" -ProgressMeter = "92933f4c-e287-5a05-a399-4b506db050ca" Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -["0.2.5-0"] +["0.2.5-0.2"] LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + +["0.3-0"] +CriticalNeighborhood = "3c818559-954a-4ec8-ad7b-b8bb044d1093" +Graphs = "86223c79-3864-5bf0-83f7-82e725a168b6" +PointServers = "971ec62b-5a8f-4025-ae2c-95144b3fab64" diff --git a/N/NeighborhoodClustering/Package.toml b/N/NeighborhoodClustering/Package.toml index d8ac0e7..9d0ffc8 100644 --- a/N/NeighborhoodClustering/Package.toml +++ b/N/NeighborhoodClustering/Package.toml @@ -1,3 +1,4 @@ name = "NeighborhoodClustering" uuid = "d32f3a2f-26fa-5ce0-a2ac-000c59351c13" repo = "git@github.com:HolyLab/NeighborhoodClustering.jl.git" +subdir = "NeighborhoodClustering" diff --git a/N/NeighborhoodClustering/Versions.toml b/N/NeighborhoodClustering/Versions.toml index e63afdb..aa079be 100644 --- a/N/NeighborhoodClustering/Versions.toml +++ b/N/NeighborhoodClustering/Versions.toml @@ -18,3 +18,6 @@ git-tree-sha1 = "864d50def09c445afa3c767f0fe4bb90856dc36f" ["0.2.5"] git-tree-sha1 = "b61220db5bdd69bcecb1b07e27a300c8a56ce4a3" + +["0.3.0"] +git-tree-sha1 = "20e2ab789349f5dd68bc61e37169993a00ec53db"