From 276c47ebe37987c5b92fb9cfe9f034206bb26c2c Mon Sep 17 00:00:00 2001
From: Tim Holy <tim.holy@gmail.com>
Date: Wed, 6 May 2026 05:09:09 -0500
Subject: [PATCH 1/4] NeighborhoodClustering -> TippingPointNeighborhoods

This makes the following renames:
- `CriticalNeighborhood` -> `TippingPointNeighborhoods`
- `NeighborhoodClustering` -> `TPNClustering`
The repository name changed to TippingPointNeighborhoods.jl.
---
 C/CriticalNeighborhood/Package.toml                           | 4 ----
 C/CriticalNeighborhood/Versions.toml                          | 2 --
 N/NeighborhoodClustering/Package.toml                         | 4 ----
 Registry.toml                                                 | 4 ++--
 {N/NeighborhoodClustering => T/TPNClustering}/Compat.toml     | 0
 {N/NeighborhoodClustering => T/TPNClustering}/Deps.toml       | 0
 T/TPNClustering/Package.toml                                  | 4 ++++
 {N/NeighborhoodClustering => T/TPNClustering}/Versions.toml   | 2 +-
 .../TippingPointNeighborhoods}/Compat.toml                    | 0
 .../TippingPointNeighborhoods}/Deps.toml                      | 0
 T/TippingPointNeighborhoods/Package.toml                      | 4 ++++
 T/TippingPointNeighborhoods/Versions.toml                     | 2 ++
 12 files changed, 13 insertions(+), 13 deletions(-)
 delete mode 100644 C/CriticalNeighborhood/Package.toml
 delete mode 100644 C/CriticalNeighborhood/Versions.toml
 delete mode 100644 N/NeighborhoodClustering/Package.toml
 rename {N/NeighborhoodClustering => T/TPNClustering}/Compat.toml (100%)
 rename {N/NeighborhoodClustering => T/TPNClustering}/Deps.toml (100%)
 create mode 100644 T/TPNClustering/Package.toml
 rename {N/NeighborhoodClustering => T/TPNClustering}/Versions.toml (89%)
 rename {C/CriticalNeighborhood => T/TippingPointNeighborhoods}/Compat.toml (100%)
 rename {C/CriticalNeighborhood => T/TippingPointNeighborhoods}/Deps.toml (100%)
 create mode 100644 T/TippingPointNeighborhoods/Package.toml
 create mode 100644 T/TippingPointNeighborhoods/Versions.toml

diff --git a/C/CriticalNeighborhood/Package.toml b/C/CriticalNeighborhood/Package.toml
deleted file mode 100644
index 435b970..0000000
--- a/C/CriticalNeighborhood/Package.toml
+++ /dev/null
@@ -1,4 +0,0 @@
-name = "CriticalNeighborhood"
-uuid = "3c818559-954a-4ec8-ad7b-b8bb044d1093"
-repo = "git@github.com:HolyLab/NeighborhoodClustering.jl.git"
-subdir = "CriticalNeighborhood"
diff --git a/C/CriticalNeighborhood/Versions.toml b/C/CriticalNeighborhood/Versions.toml
deleted file mode 100644
index a6b97c4..0000000
--- a/C/CriticalNeighborhood/Versions.toml
+++ /dev/null
@@ -1,2 +0,0 @@
-["0.1.0"]
-git-tree-sha1 = "328b3f5bab662a9d9ae9efe141a0592405848242"
diff --git a/N/NeighborhoodClustering/Package.toml b/N/NeighborhoodClustering/Package.toml
deleted file mode 100644
index 9d0ffc8..0000000
--- a/N/NeighborhoodClustering/Package.toml
+++ /dev/null
@@ -1,4 +0,0 @@
-name = "NeighborhoodClustering"
-uuid = "d32f3a2f-26fa-5ce0-a2ac-000c59351c13"
-repo = "git@github.com:HolyLab/NeighborhoodClustering.jl.git"
-subdir = "NeighborhoodClustering"
diff --git a/Registry.toml b/Registry.toml
index 18fb49f..742cb2d 100644
--- a/Registry.toml
+++ b/Registry.toml
@@ -31,7 +31,7 @@ register any package within lab scope.
 395f9d9a-971b-4d1d-8fea-4857c99358f6 = { name = "TaylorRemainders", path = "T/TaylorRemainders" }
 3bd9afcd-55df-531a-9b34-dc642dce7b95 = { name = "RFFT", path = "R/RFFT" }
 3c0dd727-6833-5f5d-a1e8-c0d421935c74 = { name = "RegisterMismatch", path = "R/RegisterMismatch" }
-3c818559-954a-4ec8-ad7b-b8bb044d1093 = { name = "CriticalNeighborhood", path = "C/CriticalNeighborhood" }
+3c818559-954a-4ec8-ad7b-b8bb044d1093 = { name = "TippingPointNeighborhoods", path = "T/TippingPointNeighborhoods" }
 43b7f2cc-1a9d-11e9-093e-178b9f97357d = { name = "ImagineProcedures", path = "I/ImagineProcedures" }
 45426be3-ce3a-4f7b-a429-3e2aa7698a5f = { name = "PhaseOptimizedComponentAnalysis", path = "P/PhaseOptimizedComponentAnalysis" }
 454fbcff-fa78-4492-9c80-2cfc3f2a4b52 = { name = "CounterMarking", path = "C/CounterMarking" }
@@ -70,7 +70,7 @@ c19381b7-cf49-59d7-881c-50dfbd227eaf = { name = "RegisterDeformation", path = "R
 c3b4e2a2-e463-46f1-b1f5-667b5e187791 = { name = "MappedIndexArrays", path = "M/MappedIndexArrays" }
 cd6f60fb-236b-5882-ad4f-250d5433a9a7 = { name = "TileTrees", path = "T/TileTrees" }
 d076106b-79cb-5c5e-aa42-567a067496c5 = { name = "ImaginePlots", path = "I/ImaginePlots" }
-d32f3a2f-26fa-5ce0-a2ac-000c59351c13 = { name = "NeighborhoodClustering", path = "N/NeighborhoodClustering" }
+d32f3a2f-26fa-5ce0-a2ac-000c59351c13 = { name = "TPNClustering", path = "T/TPNClustering" }
 d4862ba2-f42c-5aeb-af4f-96a8884a16c4 = { name = "RegisterUtilities", path = "R/RegisterUtilities" }
 d514a27a-15fd-11e9-2877-55d10791f35b = { name = "ImagineAnalyses", path = "I/ImagineAnalyses" }
 d8fd01e4-1764-11e9-0a01-8f76bebf08d8 = { name = "CachedArrays", path = "C/CachedArrays" }
diff --git a/N/NeighborhoodClustering/Compat.toml b/T/TPNClustering/Compat.toml
similarity index 100%
rename from N/NeighborhoodClustering/Compat.toml
rename to T/TPNClustering/Compat.toml
diff --git a/N/NeighborhoodClustering/Deps.toml b/T/TPNClustering/Deps.toml
similarity index 100%
rename from N/NeighborhoodClustering/Deps.toml
rename to T/TPNClustering/Deps.toml
diff --git a/T/TPNClustering/Package.toml b/T/TPNClustering/Package.toml
new file mode 100644
index 0000000..7fd4e4c
--- /dev/null
+++ b/T/TPNClustering/Package.toml
@@ -0,0 +1,4 @@
+name = "TPNClustering"
+uuid = "d32f3a2f-26fa-5ce0-a2ac-000c59351c13"
+repo = "git@github.com:HolyLab/TippingPointNeighborhoods.jl.git"
+subdir = "TPNClustering"
diff --git a/N/NeighborhoodClustering/Versions.toml b/T/TPNClustering/Versions.toml
similarity index 89%
rename from N/NeighborhoodClustering/Versions.toml
rename to T/TPNClustering/Versions.toml
index aa079be..e751aff 100644
--- a/N/NeighborhoodClustering/Versions.toml
+++ b/T/TPNClustering/Versions.toml
@@ -20,4 +20,4 @@ git-tree-sha1 = "864d50def09c445afa3c767f0fe4bb90856dc36f"
 git-tree-sha1 = "b61220db5bdd69bcecb1b07e27a300c8a56ce4a3"
 
 ["0.3.0"]
-git-tree-sha1 = "20e2ab789349f5dd68bc61e37169993a00ec53db"
+git-tree-sha1 = "7538768cb6b9ee615adcf51a0f794470b1f66ec0"
diff --git a/C/CriticalNeighborhood/Compat.toml b/T/TippingPointNeighborhoods/Compat.toml
similarity index 100%
rename from C/CriticalNeighborhood/Compat.toml
rename to T/TippingPointNeighborhoods/Compat.toml
diff --git a/C/CriticalNeighborhood/Deps.toml b/T/TippingPointNeighborhoods/Deps.toml
similarity index 100%
rename from C/CriticalNeighborhood/Deps.toml
rename to T/TippingPointNeighborhoods/Deps.toml
diff --git a/T/TippingPointNeighborhoods/Package.toml b/T/TippingPointNeighborhoods/Package.toml
new file mode 100644
index 0000000..2fca8b5
--- /dev/null
+++ b/T/TippingPointNeighborhoods/Package.toml
@@ -0,0 +1,4 @@
+name = "TippingPointNeighborhoods"
+uuid = "3c818559-954a-4ec8-ad7b-b8bb044d1093"
+repo = "git@github.com:HolyLab/TippingPointNeighborhoods.jl.git"
+subdir = "TippingPointNeighborhoods"
diff --git a/T/TippingPointNeighborhoods/Versions.toml b/T/TippingPointNeighborhoods/Versions.toml
new file mode 100644
index 0000000..0eb83e3
--- /dev/null
+++ b/T/TippingPointNeighborhoods/Versions.toml
@@ -0,0 +1,2 @@
+["0.1.0"]
+git-tree-sha1 = "51a063e887659f71dd35d9babdf43ce4b05de70e"

From 0f1c9558193c6aef73917b946cfb767bae64ecc9 Mon Sep 17 00:00:00 2001
From: Tim Holy <tim.holy@gmail.com>
Date: Wed, 6 May 2026 08:17:35 -0500
Subject: [PATCH 2/4] New version: PointServers v0.1.1

UUID: 971ec62b-5a8f-4025-ae2c-95144b3fab64
Repo:
Tree: 388a413d1fe3fd165a6857d7f75a1195b0e9c8c8
---
 P/PointServers/Versions.toml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/P/PointServers/Versions.toml b/P/PointServers/Versions.toml
index 93d7bfc..134ae67 100644
--- a/P/PointServers/Versions.toml
+++ b/P/PointServers/Versions.toml
@@ -1,2 +1,5 @@
 ["0.1.0"]
 git-tree-sha1 = "fbb114703b7147575e3a1704eeecaab6de0232c6"
+
+["0.1.1"]
+git-tree-sha1 = "388a413d1fe3fd165a6857d7f75a1195b0e9c8c8"

From 32d20fb305766863024b87aaceeaff222d0c3fa1 Mon Sep 17 00:00:00 2001
From: Tim Holy <tim.holy@gmail.com>
Date: Wed, 6 May 2026 08:18:12 -0500
Subject: [PATCH 3/4] New version: TippingPointNeighborhoods v0.1.1

UUID: 3c818559-954a-4ec8-ad7b-b8bb044d1093
Repo:
Tree: 7a9a6789cecc811c41811749b8f9f3035f09b1b4
---
 T/TippingPointNeighborhoods/Versions.toml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/T/TippingPointNeighborhoods/Versions.toml b/T/TippingPointNeighborhoods/Versions.toml
index 0eb83e3..7514562 100644
--- a/T/TippingPointNeighborhoods/Versions.toml
+++ b/T/TippingPointNeighborhoods/Versions.toml
@@ -1,2 +1,5 @@
 ["0.1.0"]
 git-tree-sha1 = "51a063e887659f71dd35d9babdf43ce4b05de70e"
+
+["0.1.1"]
+git-tree-sha1 = "7a9a6789cecc811c41811749b8f9f3035f09b1b4"

From ba2bc8fbf6d5392a7098cdc898e2b5f2a6293c95 Mon Sep 17 00:00:00 2001
From: Tim Holy <tim.holy@gmail.com>
Date: Wed, 6 May 2026 08:18:32 -0500
Subject: [PATCH 4/4] New version: TPNClustering v0.3.1

UUID: d32f3a2f-26fa-5ce0-a2ac-000c59351c13
Repo:
Tree: c67b0b2542364a437b06fbd8a00b2e66a46e78cb
---
 T/TPNClustering/Compat.toml   | 7 ++++++-
 T/TPNClustering/Deps.toml     | 7 ++++++-
 T/TPNClustering/Versions.toml | 3 +++
 3 files changed, 15 insertions(+), 2 deletions(-)

diff --git a/T/TPNClustering/Compat.toml b/T/TPNClustering/Compat.toml
index 3e131d3..6b9ab1d 100644
--- a/T/TPNClustering/Compat.toml
+++ b/T/TPNClustering/Compat.toml
@@ -29,7 +29,12 @@ julia = "1.10.0-1"
 LinearAlgebra = "1"
 
 ["0.3-0"]
-CriticalNeighborhood = "0.1"
 Graphs = "1"
 PointServers = "0.1"
 julia = "1.12.0-1"
+
+["0.3.0"]
+CriticalNeighborhood = "0.1"
+
+["0.3.1-0"]
+TippingPointNeighborhoods = "0.1"
diff --git a/T/TPNClustering/Deps.toml b/T/TPNClustering/Deps.toml
index c133019..0ecfe01 100644
--- a/T/TPNClustering/Deps.toml
+++ b/T/TPNClustering/Deps.toml
@@ -12,6 +12,11 @@ Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 
 ["0.3-0"]
-CriticalNeighborhood = "3c818559-954a-4ec8-ad7b-b8bb044d1093"
 Graphs = "86223c79-3864-5bf0-83f7-82e725a168b6"
 PointServers = "971ec62b-5a8f-4025-ae2c-95144b3fab64"
+
+["0.3.0"]
+CriticalNeighborhood = "3c818559-954a-4ec8-ad7b-b8bb044d1093"
+
+["0.3.1-0"]
+TippingPointNeighborhoods = "3c818559-954a-4ec8-ad7b-b8bb044d1093"
diff --git a/T/TPNClustering/Versions.toml b/T/TPNClustering/Versions.toml
index e751aff..52a5cb2 100644
--- a/T/TPNClustering/Versions.toml
+++ b/T/TPNClustering/Versions.toml
@@ -21,3 +21,6 @@ git-tree-sha1 = "b61220db5bdd69bcecb1b07e27a300c8a56ce4a3"
 
 ["0.3.0"]
 git-tree-sha1 = "7538768cb6b9ee615adcf51a0f794470b1f66ec0"
+
+["0.3.1"]
+git-tree-sha1 = "c67b0b2542364a437b06fbd8a00b2e66a46e78cb"