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<!DOCTYPE html>
<head>
<meta charset="utf-8">
<title>Probabilistic mutation signature</title>
<link rel="stylesheet" href="./css/bootstrap.css " charset="utf-8">
<style type="text/css" media="screen">
body {
background: #fcfcfc;
margin: 0 auto;
}
.page-header {
border: none;
color: #4ac;
}
.page-header h1 {
font-size: 4em;
}
.page-header small {
color: #ccc;
}
.container {
/* margin: 0 auto; */
width: 970px !important;
height: 500px;
}
svg {
background: #fff;
width: 100%;
height: 500px;
}
</style>
</head>
<body>
<input id="uploadData" type="file" multiple style="display:none">
<div class="container">
<div class="page-header">
<h1>PMS <small>Probabilistic Mutation Signature</small></h1>
</div>
<nav class="navbar navbar-default" role="navigation">
<ul class="nav navbar-nav">
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown">File <b class="caret"></b></a>
<ul class="dropdown-menu dropdown-menu-settings" id="menu-file">
<li role="presentation" class="dropdown-header">Datasets</li>
<li role="presentation" class="dataset active"><a role="menuitem" tabindex="-1" href="#" data-id="Signature 0">Test</a></li>
<li role="presentation" class="dataset"><a role="menuitem" tabindex="-1" href="#" data-id="sig_1">sig_1</a></li>
<li role="presentation" class="dataset"><a role="menuitem" tabindex="-1" href="#" data-id="sig_3">sig_3</a></li>
<li role="presentation" class="dataset"><a role="menuitem" tabindex="-1" href="#" data-id="sig_8">sig_8</a></li>
<li role="presentation" class="dataset"><a role="menuitem" tabindex="-1" href="#" data-id="sig_13">sig_13</a></li>
<li role="presentation" class="dataset"><a role="menuitem" tabindex="-1" href="#" data-id="sig_17">sig_17</a></li>
<li role="presentation" class="dataset"><a role="menuitem" tabindex="-1" href="#" data-id="sig_20">sig_20</a></li>
<li role="presentation" class="dataset"><a role="menuitem" tabindex="-1" href="#" data-id="sig_22">sig_22</a></li>
<li role="presentation" class="dataset"><a role="menuitem" tabindex="-1" href="#" data-id="sig_25">sig_25</a></li>
<li role="presentation" class="dataset"><a role="menuitem" tabindex="-1" href="#" data-id="sig_27">sig_27</a></li>
<li role="presentation" class="divider"></li>
<!-- <li id="add_dataset" role="presentation"><a role="menuitem" tabindex="-1" href="#">Open...</a></li>
<li role="presentation" class="divider"></li>
<li role="presentation" class="disabled"><a role="menuitem" tabindex="-1" href="#">Save</a></li>-->
<li role="presentation" class="disabled"><a role="menuitem" tabindex="-1" href="#">Export as SVG</a></li>
</ul>
</li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown">Color <b class="caret"></b></a>
<ul class="dropdown-menu dropdown-menu-settings" id="menu-color">
<li role="presentation" class="dropdown-header">Choose a color set</li>
<li id="seqlogo" role="presentation" class="active"><a role="menuitem" tabindex="-1" href="#" data-id="seqlogo">SeqLogo</a></li>
<li id="pmsig" role="presentation"><a role="menuitem" tabindex="-1" href="#" data-id="pmsig">pmsig</a></li>
<li id="set1" role="presentation"><a role="menuitem" tabindex="-1" href="#" data-id="set1">Set1</a></li>
<li id="set2" role="presentation"><a role="menuitem" tabindex="-1" href="#" data-id="set2">Set2</a></li>
<li id="set3" role="presentation"><a role="menuitem" tabindex="-1" href="#" data-id="set3">Set3</a></li>
</ul>
</li>
<!--
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown">Display <b class="caret"></b></a>
<ul class="dropdown-menu dropdown-menu-settings" id="menu-display">
<li role="presentation" class="dropdown-header">Display Bases</li>
<li id="vertical" role="presentation"><a role="menuitem" tabindex="-1" href="#" data-id="vertical">Vertical</a></li>
<li id="horizontal" role="presentation" class="active"><a role="menuitem" tabindex="-1" href="#" data-id="horizontal">Horizontal</a></li>
</ul>
</li>
-->
</ul>
<p class="navbar-text"></p>
</nav>
<div class="row">
<div class="col-xs-12" id="display">
<!-- <input id="slider" type="range" min="0" max="360" step="1" value="0"> -->
<svg height="500" width="700"><!-- define directlyl, so "save as.." can see content -->
<clipPath id="standardBase">
<rect x="0" y="0" width="100" height="100" rx="10" ry="10" />
</clipPath>
<clipPath id="mutatedBase">
<path d=" M 10,0
h 180
a 10,10 0 0 1 10,10
v 190
h -200
v -190
a 10,10 0 0 1 10,-10
z"></path>
</clipPath>
<clipPath id="centerBase">
<path d=" M 0,0
h 100
v 90
a 10,10 0 0 1 -10,10
h -80
a 10,10 0 0 1 -10,-10
v -90
z"></path>
</clipPath>
</svg>
</div>
</div>
</div>
<script src="./js/d3.min.js"></script>
<script src="./js/jquery-2.0.3.min.js"></script>
<script src="./js/colorbrewer.js"></script>
<script src="./js/bootstrap.min.js"></script>
<script src="./js/pms.js"></script>
<script src="./js/ui.js"></script>
</body>
</html>