I'm having trouble understanding the output dataframe for the function pausingIndex. What's the difference between Pause and Body? Also PauseCounts and Gene Counts and uPCounts and uGCounts? Which among these indicate the counts at the promoter and which are gene body?
I'm having trouble understanding the output dataframe for the function pausingIndex. What's the difference between Pause and Body? Also PauseCounts and Gene Counts and uPCounts and uGCounts? Which among these indicate the counts at the promoter and which are gene body?