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Don't change this yet, but the following argument name is confusing. It's an input path to a tsv of normalized kmer counts but is named norm-output.
Autometa/autometa/common/kmers.py
Lines 736 to 740 in baf61c0
| parser.add_argument( | |
| "--norm-output", | |
| help=f"Path to normalized kmers table (will skip if file exists)", | |
| metavar="filepath", | |
| ) |
The command's output file path is also named ...-output:
Autometa/autometa/common/kmers.py
Lines 758 to 762 in baf61c0
| parser.add_argument( | |
| "--embedding-output", | |
| help=f"Path to write embedded kmers table (will skip if file exists)", | |
| metavar="filepath", | |
| ) |
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