Update tox and project.toml

Author: PicoCentauri

pyproject.toml

@@ -59,3 +59,41 @@ mda = "mdacli.__main__:main"
 
 [tool.setuptools.packages.find]
 where = ["src"]
+
+[tool.flake8]
+max_line_length = 80
+hang-closing = true
+ignore = [
+    "W293",
+    "W503",
+    "D412",
+    "D105",
+]
+docstring-convention = "numpy"
+
+[tool.isort]
+line_length = 80
+indent = 4
+multi_line_output = 8
+include_trailing_comma = true
+lines_after_imports = 2
+sections = "FUTURE,STDLIB,THIRDPARTY,FIRSTPARTY,LOCALFOLDER"
+known_first_party = "mdacli"
+known_third_party = [
+    "MDAnalysis",
+    "hypothesis",
+    "matplotlib",
+    "numpy",
+    "pytest",
+]
+
+[tool.pytest.ini_options]
+addopts = "-p pytest_cov"
+python_files = [
+    "test_*.py",
+    "*_test.py",
+    "tests.py",
+]
+testpaths = [
+    "tests"
+]

src/mdacli/libcli.py

@@ -759,13 +759,10 @@ def init_base_argparse(name, version, description):
 
     Parameters
     ----------
-
     name : str
         Name of the cli program
-
     version : str
         Version of the cli program
-
     description : str
         Description of the cli program
 

tox.ini

@@ -1,5 +1,5 @@
 [tox]
-minversion = 3.14.0
+minversion = 4.4.6
 ignore_basepython_conflict = true
 # these are the environments that will run when you
 # execute `tox` in the command-line
@@ -52,8 +52,8 @@ deps =
     isort
 skip_install = true
 commands =
-    flake8 {posargs:src/mdacli tests setup.py}
-    isort --verbose --check-only --diff src/mdacli tests setup.py
+    flake8 {posargs:src/mdacli tests}
+    isort --verbose --check-only --diff src/mdacli tests
 
 # asserts package build integrity
 [testenv:build]
@@ -62,19 +62,17 @@ commands =
 setenv =
     COMMIT_MSG = Test commit message
 deps =
-    setuptools
-    wheel
-    twine
-    docutils
-    check-manifest
-    readme-renderer
     bump2version
+    build
+    check-manifest
+    twine
+
 skip_install = true
 commands_pre = python {toxinidir}/devtools/clean_dist_check.py
 commands =
     python --version
     python {toxinidir}/devtools/check_changelog.py
-    python setup.py sdist bdist_wheel
+    python -m build
     twine check dist/*.whl
     twine check dist/*.tar.gz
     check-manifest {toxinidir}
@@ -104,38 +102,3 @@ commands =
 deps = safety
 skip_install = true
 commands = safety check
-
-[flake8]
-max_line_length = 80
-hang-closing = true
-ignore =
-    W293
-    W503
-    D412
-    D105
-per-file-ignores = setup.py:E501
-docstring-convention = numpy
-
-[isort]
-line_length = 80
-indent = 4
-multi_line_output = 8
-include_trailing_comma = true
-lines_after_imports = 2
-sections=FUTURE,STDLIB,THIRDPARTY,FIRSTPARTY,LOCALFOLDER
-known_first_party = mdacli
-known_third_party =
-    MDAnalysis
-    hypothesis
-    matplotlib
-    numpy
-    pytest
-
-[tool:pytest]
-addopts = -p pytest_cov
-python_files =
-    test_*.py
-    *_test.py
-    tests.py
-testpaths =
-    tests