Skip to content

convert "from_organism" predicate to MemberLink format to display sars2 genes/proteins as a pathway #26

Description

@mjsduncan

in coronavirus_biogrid.py, change senamatics of association of SARS-CoV-2 genes and proteins from current format to pathway semantics so the set of SARS2 genes can be displayed like a pathway in the gene-annotation service.

(EvaluationLink
     (PredicateNode "from_organism")
     (ListLink
          (GeneNode "M")
          (ConceptNode "ncbi:2697049")))

should be

(MemberLink
     (GeneNode "M")
     (ConceptNode "ncbi:2697049"))

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions