GO namespace is missing for some of the imported GO

[leungmanhin]

Some GOs are not in any of the three namespaces (Molecular Function, Cellular Component, Biological Process)

To print out the list of GOs with their namespace missing in Guile:

(use-modules (opencog) (opencog exec) (opencog bioscience))

;  change the below paths as needed
(primitive-load "GO_2020-04-01.scm")
(primitive-load "GO_annotation_gene-level_2020-04-01.scm")
(primitive-load "Go-Plus-GO_2020-05-04.scm")

(for-each
  (lambda (go)
    (if (null? (cog-outgoing-set
          (cog-execute!
            (Get
              (TypedVariable (Variable "$x") (Type "ConceptNode"))
              (Evaluation (Predicate "GO_namespace") (List go (Variable "$x")))))))
      (format #t "~a\n" (cog-name go))))
  (filter
    (lambda (c)
      (string-prefix? "GO:" (cog-name c)))
    (cog-get-atoms 'ConceptNode)))

[leungmanhin]

I see that there are 44519 GOs in GO_2020-04-01.scm, and they all come with namespaces.

After loading GO_annotation_gene-level_2020-04-01.scm, 10 extra GOs are added:

GO:0005072
GO:0042623
GO:0030702
GO:0030617
GO:0030616
GO:0006343
GO:0070869
GO:0030618
GO:0004584
GO:0098740

After loading Go-Plus-GO_2020-05-04.scm, 30 more are added:

GO:0140453
GO:0062235
GO:0140458
GO:0140451
GO:0140449
GO:0062239
GO:0062237
GO:0106258
GO:0062240
GO:0140457
GO:0062236
GO:0140454
GO:0062241
GO:0140447
GO:0062242
GO:0140450
GO:0140455
GO:0062238
GO:0106257
GO:0062243
GO:0140460
GO:0062244
GO:0140459
GO:0062246
GO:0140456
GO:0106259
GO:0140448
GO:0062245
GO:0062247
GO:0140446

It's these extra ones that come from files other than the GO-<date>.scm has no namespace associated.