Error in plot.window(...) : need finite 'xlim' values

[stefmldk]

Dear CONIPHER developers/maintainers.

CONIPHER analyses the test data without issues. Nevertheless, I have a dataset that causes CONIPHER to throw an error during plotting while in the clustering process. Some of the last lines of the stdout stream look as follows:

[1] 0
[1] "Creating human readable output"
[1] "Running non-original output"
[1] "Cleaning clusters"
[1] "Final merging of ubiqquitous clusters"
[1] "No clusters above specified thresholds"
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
The following from values were not present in x: 1A, 1, 2A, 2, 3
[1] "Using tsv data for plotting"
Error in plot.window(...) : need finite 'xlim' values
Calls: conipher_run ... plot.simpleClusters.raw -> plot -> plot.default -> localWindow -> plot.window
In addition: There were 50 or more warnings (use warnings() to see the first 50)
Execution halted

Cheers,
Steffen

[arihueb]

Hi Steffen, this error could be occurring if not all chromosomes are included in the input.tsv and input_seg.tsv. We are working on updating the plotting which will hopefully provide a more robust fix to this issue.

[Mashuaiii]

Hi @arihueb ，
Thank you for the great tool! I also encountered the same problem. May I ask if it has been solved?