Skip to content

Fixing for pandas v3 #22

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
nikita6187 merged 1 commit into from
Apr 1, 2026
Merged

Fixing for pandas v3 #22

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
6 changes: 3 additions & 3 deletions pyproject.toml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ build-backend = "setuptools.build_meta" # Standard entry point for setuptools bu

[project]
name = "twinweaver"
version = "0.3.3"
version = "0.3.4"
description = "Converting longitudinal patient data into text for LLM-based event prediction and forecasting."

# --- NEW/UPDATED FIELDS ---
Expand Down Expand Up @@ -46,7 +46,7 @@ classifiers = [
# dependencies
dependencies = [
"numpy",
"pandas<3.0.0",
"pandas",
"transformers",
"scikit-learn",
"jupyter",
Expand All @@ -58,7 +58,7 @@ dependencies = [
dev = [
"pytest",
"numpy",
"pandas<3.0.0",
"pandas",
"transformers",
"scikit-learn",
"ruff",
Expand Down
2 changes: 2 additions & 0 deletions twinweaver/instruction/data_splitter_forecasting.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -274,6 +274,8 @@ def setup_statistics(self, train_patientids: list = None):
del temp_patient_data

all_possible_split_dates = pd.concat(all_possible_split_dates, axis=0, ignore_index=True)
# In case pandas 3.0.0 causes issues
all_possible_split_dates[self.config.date_col] = pd.to_datetime(all_possible_split_dates[self.config.date_col])
all_possible_split_dates = all_possible_split_dates.drop_duplicates()

#: filter to only train patients
Expand Down
Loading