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Project: Improving QC protocols for AMP SCZ Clinical and MRI Data #1779

Description

@owenborders

Draft Status

Draft - team will hold off on page creation

Category

Quantification and Computation

Key Investigators

  • Sylvain Bouix (école de technologie supérieure, Canada)
  • Owen Borders (Psychiatry Neuroimaging Lab, U.S.)
  • Keerthana Srinivasan (Psychiatry Neuroimaging Lab, U.S.)

Project Description

We will be adding anomaly detection algorithms to clinical data and MRI data in the AMP SCZ project.

Objective

  1. We would like to achieve MRI QC reports that accurately correlate to human QC ratings, in addition to uncovering new QC rules for clinical forms using machine learning anomaly detection algorithms.

Approach and Plan

  1. For the clinical data, we will use DBSCAN to search for correlations between every variable and flag cases that deviate the most.
  2. For the MRI data, we will artificially add artifacts to clean MRI scans and train a neural network to rank the severity.

Progress and Next Steps

  1. Describe specific steps you have actually done.

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