seqconv_debugging

[manny809dr]

seqconv convert --ref AnoCar2 --out uc test2_Anolis_carolinensis.AnoCa22.0.79.gtf

debugging_issue.txt

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/090/745/GCF_000090745.1_AnoCar2.0/GCF_000090745.1_AnoCar2.0_assembly_report.txt
Converting from None to ucStarting Conversion
Traceback (most recent call last):
File "/usr/local/bin/seqconv", line 11, in
load_entry_point('seqconv==0.0.1', 'console_scripts', 'seqconv')()
File "/usr/local/lib/python3.5/dist-packages/seqconv-0.0.1-py3.5.egg/cli/command.py", line 98, in main
comm()
File "/usr/local/lib/python3.5/dist-packages/seqconv-0.0.1-py3.5.egg/cli/command.py", line 52, in init
getattr(self, args.command)()
File "/usr/local/lib/python3.5/dist-packages/seqconv-0.0.1-py3.5.egg/cli/command.py", line 94, in convert
id_to=args.out)
File "/usr/local/lib/python3.5/dist-packages/seqconv-0.0.1-py3.5.egg/cli/assembly.py", line 288, in converter
guess=True)
File "/usr/local/lib/python3.5/dist-packages/seqconv-0.0.1-py3.5.egg/cli/assembly.py", line 174, in convert
line = line.decode("utf-8")
AttributeError: 'str' object has no attribute 'decode'