serosv/_pkgdown.yml at main · OUCRU-Modelling/serosv · GitHub

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url: https://oucru-modelling.github.io/serosv/
template:
  bootstrap: 5
  math-rendering: mathjax

reference:
- title: Dataset
- subtitle: Hepatitis A
  contents:
  - hav_be_1993_1994
  - hav_be_2002
  - hav_bg_1964
- subtitle: Hepatitis B
  contents:
  - hbv_ru_1999
- subtitle: Hepatitis C
  contents:
  - hcv_be_2006
- subtitle: Mumps
  contents:
  - mumps_uk_1986_1987
- subtitle: Parvo B19
  contents:
  - parvob19_be_2001_2003
  - parvob19_ew_1996
  - parvob19_fi_1997_1998
  - parvob19_it_2003_2004
  - parvob19_pl_1995_2004
- subtitle: Rubella
  contents:
  - rubella_uk_1986_1987
- subtitle: Tuberculosis
  contents:
  - tb_nl_1966_1973
- subtitle: VZV
  contents:
  - vzv_be_1999_2000
  - vzv_be_2001_2003
- subtitle: Multivariate data
  contents:
  - rubella_mumps_uk
  - vzv_parvo_be

- title: Models
  contents:
  - polynomial_model
  - farrington_model
  - weibull_model
  - fp_model
  - lp_model
  - hierarchical_bayesian_model
  - penalized_spline_model
  - mixture_model
  - estimate_from_mixture
  - age_time_model

- title: Plotting functions
  contents:
  - plot_corrected_prev
  - plot_standard_curve
  - plot_titer_qc
  - plot_gcv
  - plot.polynomial_model
  - plot.farrington_model
  - plot.weibull_model
  - plot.fp_model
  - plot.lp_model
  - plot.hierarchical_bayesian_model
  - plot.penalized_spline_model
  - plot.mixture_model
  - plot.estimate_from_mixture
  - plot.age_time_model
  - set_plot_style
  - add_thresholds

- title: Other utilities
  contents:
  - serosv-package
  - est_foi
  - pava
  - to_titer
  - correct_prevalence
  - transform_data
  - standardize_data
  - compare_models
  - compute_ci.default
  - compute_ci.fp_model
  - compute_ci.lp_model
  - compute_ci.weibull_model
  - compute_ci.penalized_spline_model
  - compute_ci.mixture_model
  - compute_ci.age_time_model
  - compute_ci.hierarchical_bayesian_model
  - predict.age_time_model
  - predict.farrington_model
  - predict.fp_model
  - predict.hierarchical_bayesian_model
  - predict.lp_model
  - predict.penalized_spline_model
  - predict.weibull_model
  - predict.polynomial_model
  - find_best_fp_powers

articles:
- title: Fitting data
  navbar: ~
  contents:
  - linelisting_vs_aggregated
  - parametric_model
  - nonparametric_model
  - semiparametric_model
  - model_quantitative_data
  - repeated_cross_sectional
- title: Utilities
  navbar: Utilities
  contents:
  - reading_to_titer
  - data_transformation
  - imperfect_test
  - visualizing_model
  - model_selection