seqpac/NAMESPACE at master · OestLab/seqpac · GitHub

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# Generated by roxygen2: do not edit by hand

export(PAC)
export(PAC_analyze)
export(PAC_annotate)
export(PAC_check)
export(PAC_covplot)
export(PAC_create)
export(PAC_deseq)
export(PAC_filter)
export(PAC_filtsep)
export(PAC_gtf)
export(PAC_jitter)
export(PAC_mapper)
export(PAC_nbias)
export(PAC_norm)
export(PAC_pca)
export(PAC_pie)
export(PAC_saturation)
export(PAC_sizedist)
export(PAC_stackbar)
export(PAC_summary)
export(PAC_trna)
export(add_reanno)
export(anno)
export(as.PAC)
export(as.reanno)
export(counts)
export(filtsep_bin)
export(full)
export(import_reanno)
export(make_PAC)
export(make_conv)
export(make_counts)
export(make_cutadapt)
export(make_pheno)
export(make_reanno)
export(make_trim)
export(map_rangetype)
export(map_reanno)
export(merge_lanes)
export(norm)
export(overview)
export(pheno)
export(reanno)
export(show.PAC)
export(simplify_reanno)
export(summary)
export(tRNA_class)
exportClasses(PAC)
exportClasses(reanno)
exportMethods("anno<-")
exportMethods("counts<-")
exportMethods("full<-")
exportMethods("norm<-")
exportMethods("overview<-")
exportMethods("pheno<-")
exportMethods("summary<-")
exportMethods(anno)
exportMethods(colnames)
exportMethods(counts)
exportMethods(full)
exportMethods(length)
exportMethods(names)
exportMethods(ncol)
exportMethods(norm)
exportMethods(nrow)
exportMethods(overview)
exportMethods(pheno)
exportMethods(rownames)
exportMethods(summary)
import(stats)
importClassesFrom(tibble,tbl_df)
importFrom(S4Vectors,mcols)
importFrom(ggplot2,aes)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,scale_colour_gradient)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(methods,as)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,setMethod)
importFrom(stats,terms.formula)