Upgrade Boost from 1.78.0 to 1.87.0

- Fixes MSVC C++20 typename bug in boost::process headers (fixed upstream in 1.82)
- Boost.Process v1 shims still present in 1.87 (removed in 1.88+)
- Remove hardcoded architecture=x86 from b2 build to support ARM64

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

Author: timosachsenberg

CMakeLists.txt

@@ -187,7 +187,7 @@ set (PATCH_DIR "${PROJECT_SOURCE_DIR}/patches/" CACHE STRING "Directory containi
 ## Warning: ensure these are all upper-case names!
 set(BZIP2_DIR ${CONTRIB_BIN_SOURCE_DIR}/bzip2-1.0.5)
 set(ZLIB_DIR ${CONTRIB_BIN_SOURCE_DIR}/zlib-1.3.1)
-set(BOOST_DIR ${CONTRIB_BIN_SOURCE_DIR}/boost-1.81.0)
+set(BOOST_DIR ${CONTRIB_BIN_SOURCE_DIR}/boost-1.87.0)
 set(XERCES_DIR ${CONTRIB_BIN_SOURCE_DIR}/Xerces-C_3_2_0)
 set(LIBSVM_DIR ${CONTRIB_BIN_SOURCE_DIR}/libsvm-3.12)
 set(GLPK_DIR ${CONTRIB_BIN_SOURCE_DIR}/glpk-4.46)
@@ -223,9 +223,9 @@ set(ARCHIVE_ZLIB zlib-1.3.1.tar.gz)
 set(ARCHIVE_ZLIB_TAR  zlib-1.3.1.tar)
 set(ARCHIVE_ZLIB_SHA256 "9a93b2b7dfdac77ceba5a558a580e74667dd6fede4585b91eefb60f03b72df23")
 
-set(ARCHIVE_BOOST boost-1.81.0.tar.gz)
-set(ARCHIVE_BOOST_TAR  boost-1.81.0.tar)
-set(ARCHIVE_BOOST_SHA256 "121da556b718fd7bd700b5f2e734f8004f1cfa78b7d30145471c526ba75a151c")
+set(ARCHIVE_BOOST boost-1.87.0.tar.gz)
+set(ARCHIVE_BOOST_TAR  boost-1.87.0.tar)
+set(ARCHIVE_BOOST_SHA256 "f55c340aa49763b1925ccf02b2e83f35fdcf634c9d5164a2acb87540173c741d")
 
 set(ARCHIVE_XERCES Xerces-C_3_2_0.tar.gz)
 set(ARCHIVE_XERCES_TAR  Xerces-C_3_2_0.tar)

libraries.cmake/boost.cmake

@@ -184,11 +184,11 @@ MACRO( OPENMS_CONTRIB_BUILD_BOOST)
 
     # boost cmd (use b2 since sometimes the copying/symlinking from b2 to bjam fails)
     set (BOOST_CMD "./b2 ${BOOST_DEBUG_FLAGS} ${BOOST_ARCHITECTURE} toolset=${_boost_toolchain} -j ${_BOOST_PARALLEL_JOBS} --disable-icu link=${BOOST_BUILD_TYPE} cxxflags=-fPIC ${BOOST_EXTRA_CXXFLAGS} ${OSX_LIB_FLAG} ${OSX_DEPLOYMENT_FLAG} ${BOOST_LINKER_FLAGS} install --build-type=complete --layout=tagged --threading=single,multi")
-    
+
     # boost install
     message(STATUS "Installing Boost libraries (${BOOST_CMD}) ...")
-    execute_process(COMMAND ./b2 ${BOOST_DEBUG_FLAGS} ${BOOST_ARCHITECTURE} toolset=${_boost_toolchain} 
-                    -j ${_BOOST_PARALLEL_JOBS} 
+    execute_process(COMMAND ./b2 ${BOOST_DEBUG_FLAGS} ${BOOST_ARCHITECTURE} toolset=${_boost_toolchain}
+                    -j ${_BOOST_PARALLEL_JOBS}
                     --disable-icu
                     -s NO_LZMA=1
                     -s NO_ZSTD=1