mref-ad/.gitignore at main · PennShenLab/mref-ad · GitHub

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# Virtual environments
.venv/
venv/
env/

# Python
__pycache__/
*.py[cod]
*$py.class
*.so
.Python
*.egg-info/
.eggs/
dist/
build/

# Jupyter
.ipynb_checkpoints/

# Editors / OS
.idea/
.vscode/
*.swp
.DS_Store

# Experiment outputs (large / local)
results/
*.pt
*.pth
*.pkl
*.joblib
*.log
wandb/
mlruns/

# Optuna / local DBs
*.db
*.sqlite3

# Vendored third-party repos (e.g. Flex-MoE, FastMoE — see scripts/baselines/FLEX_MOE_SETUP.md)
third_party/
scripts/third_party/

# Data (not for public git; keep local paths in configs)
data/

# Patient-level train/val/test splits (PTIDs); generate locally (e.g. data_preprocessing/make_splits.py)
configs/splits/*.json

# Coverage / pytest
.pytest_cache/
.coverage
htmlcov/

# MyPy / Ruff
.mypy_cache/
.ruff_cache/