From c2a38b3ef215b503a6a2d37a1683294b209eef84 Mon Sep 17 00:00:00 2001 From: Bengt Ljungquist Date: Thu, 12 Dec 2024 11:08:14 -0500 Subject: [PATCH 1/2] Updated docker image, Python version --- visualization/precompute-slide-tool/Dockerfile | 2 +- visualization/precompute-slide-tool/pyproject.toml | 9 +++++---- 2 files changed, 6 insertions(+), 5 deletions(-) diff --git a/visualization/precompute-slide-tool/Dockerfile b/visualization/precompute-slide-tool/Dockerfile index 31b6e48f4..0609dda73 100644 --- a/visualization/precompute-slide-tool/Dockerfile +++ b/visualization/precompute-slide-tool/Dockerfile @@ -1,4 +1,4 @@ -FROM polusai/bfio:2.1.9 +FROM polusai/bfio:2.4.5 # environment variables defined in polusai/bfio ENV EXEC_DIR="/opt/executables" diff --git a/visualization/precompute-slide-tool/pyproject.toml b/visualization/precompute-slide-tool/pyproject.toml index 32f663f43..63eea7239 100644 --- a/visualization/precompute-slide-tool/pyproject.toml +++ b/visualization/precompute-slide-tool/pyproject.toml @@ -6,19 +6,20 @@ authors = [ "Madhuri Vihani ", "Nick Schaub ", "Antoine Gerardin ", - "Najib Ishaq " + "Najib Ishaq ", + "Bengt Ljungquist " ] readme = "README.md" packages = [ { include = "polus", from = "src" } ] [tool.poetry.dependencies] -python = ">=3.9,<3.12" +python = ">=3.10,<3.12" typer = "^0.7.0" numpy = "~1.25.2" -bfio = { version = "2.3.3", extras = ["all"] } +bfio = { version = "2.4.5", extras = ["all"] } preadator = "0.4.0.dev2" filepattern = "^2.0.4" -imageio = "^2.33.1" +imageio = "^2.36.1" [tool.poetry.group.dev.dependencies] zarr = "^2.16.1" From 01cb520107941b9e960bdd0a47d4566f61540e67 Mon Sep 17 00:00:00 2001 From: Bengt Ljungquist Date: Thu, 12 Dec 2024 11:15:26 -0500 Subject: [PATCH 2/2] 1.7.2 -> 1.7.3-dev0 --- visualization/precompute-slide-tool/.bumpversion.cfg | 2 +- visualization/precompute-slide-tool/README.md | 2 +- visualization/precompute-slide-tool/VERSION | 2 +- visualization/precompute-slide-tool/ict.yml | 2 +- visualization/precompute-slide-tool/plugin.json | 4 ++-- visualization/precompute-slide-tool/pyproject.toml | 2 +- 6 files changed, 7 insertions(+), 7 deletions(-) diff --git a/visualization/precompute-slide-tool/.bumpversion.cfg b/visualization/precompute-slide-tool/.bumpversion.cfg index 39d781fd3..5e99d8570 100644 --- a/visualization/precompute-slide-tool/.bumpversion.cfg +++ b/visualization/precompute-slide-tool/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 1.7.2 +current_version = 1.7.3-dev0 commit = False tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\-(?P[a-z]+)(?P\d+))? diff --git a/visualization/precompute-slide-tool/README.md b/visualization/precompute-slide-tool/README.md index 1ef030930..c34548745 100644 --- a/visualization/precompute-slide-tool/README.md +++ b/visualization/precompute-slide-tool/README.md @@ -1,4 +1,4 @@ -# Polus Precompute Slide Plugin (1.7.2) +# Polus Precompute Slide Plugin (1.7.3-dev0) This WIPP plugin generates image pyramids in multiple viewing formats. Each output has a special filepattern variable that will be used to combine images diff --git a/visualization/precompute-slide-tool/VERSION b/visualization/precompute-slide-tool/VERSION index f8a696c8d..f80fd7144 100644 --- a/visualization/precompute-slide-tool/VERSION +++ b/visualization/precompute-slide-tool/VERSION @@ -1 +1 @@ -1.7.2 +1.7.3-dev0 diff --git a/visualization/precompute-slide-tool/ict.yml b/visualization/precompute-slide-tool/ict.yml index 70e7ce19b..bd7c9457b 100644 --- a/visualization/precompute-slide-tool/ict.yml +++ b/visualization/precompute-slide-tool/ict.yml @@ -68,4 +68,4 @@ ui: key: inputs.filePattern title: 'Image Pattern: ' type: text -version: 1.7.2 +version: 1.7.3-dev0 diff --git a/visualization/precompute-slide-tool/plugin.json b/visualization/precompute-slide-tool/plugin.json index b9238a6be..be655ca16 100644 --- a/visualization/precompute-slide-tool/plugin.json +++ b/visualization/precompute-slide-tool/plugin.json @@ -1,7 +1,7 @@ { "name": "Precompute Slide", - "version": "1.7.2", - "containerId": "polusai/precompute-slide-tool:1.7.2", + "version": "1.7.3-dev0", + "containerId": "polusai/precompute-slide-tool:1.7.3-dev0", "baseCommand": [ "python3", "-m", diff --git a/visualization/precompute-slide-tool/pyproject.toml b/visualization/precompute-slide-tool/pyproject.toml index 63eea7239..56bb19dc5 100644 --- a/visualization/precompute-slide-tool/pyproject.toml +++ b/visualization/precompute-slide-tool/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "polus-images-visualization-precompute-slide" -version = "1.7.2" +version = "1.7.3-dev0" description = "Polus Precompute Slide Plugin." authors = [ "Madhuri Vihani ",