diffTop/NAMESPACE at master · PratheepaJ/diffTop · GitHub

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# Generated by roxygen2: do not edit by hand

export(LDAtopicmodel)
export(alignmentMatrix)
export(betaAligned)
export(diagnosticsPlot)
export(diffTopAnalysis)
export(modelAssessment)
export(phyloseqTransformation)
export(plotASVCircular)
export(plotTopicProportion)
export(setUpData)
export(thetaAligned)
export(writeResTable)
import(Rcpp)
import(ggplot2)
import(methods)
import(phyloseq)
importFrom(DESeq2,DESeq)
importFrom(DESeq2,DESeqDataSetFromMatrix)
importFrom(DESeq2,dispersions)
importFrom(DESeq2,estimateDispersions)
importFrom(DESeq2,estimateSizeFactors)
importFrom(DESeq2,sizeFactors)
importFrom(SummarizedExperiment,assay)
importFrom(abind,abind)
importFrom(dplyr,arrange)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,summarize)
importFrom(dplyr,ungroup)
importFrom(ggnewscale,new_scale_fill)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,theme_update)
importFrom(ggplot2,xlab)
importFrom(ggtree,ggtree)
importFrom(ggtree,gheatmap)
importFrom(grDevices,rainbow)
importFrom(magrittr,"%>%")
importFrom(phyloseq,phyloseq)
importFrom(phyloseq,phyloseq_to_deseq2)
importFrom(randomcoloR,distinctColorPalette)
importFrom(reshape2,melt)
importFrom(rstan,Rhat)
importFrom(rstan,ess_bulk)
importFrom(rstan,sampling)
importFrom(rstan,stan)
importFrom(stats,cor)
importFrom(stats,median)
importFrom(stringr,str_c)
importFrom(stringr,str_remove)
importFrom(tibble,as_tibble)
importFrom(tidyr,spread)
importFrom(xtable,xtable)
useDynLib(diffTop, .registration = TRUE)